Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018511

Physical Location & Seq

Genomic Coordinates Reverse (-)

6903706 .. 6904412

Gene Structure 707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGAGTTGACCATTTCATATGGCAGAGCTTTGATTATCCTGGTGACACAATGCTGCCGAACATGGTGCTGGGATATGATAGAAAATCTGGAAAGAGCAGTTTCTTGACAGCCTGGAAAAGTGAGAGTGATCCATCCACTGGGATATTCTCAGCTGCAGGTGGACTGGCGGCAGAGATGCCAGGACAAGTGGTCATATGGAATAAATCAAAGTTCAACCGATCAACTCGCCACTGGAGAACTGGGCCATGGGATAAATCAAAGTTTATCGGTGTACTTGATATGGATAACCAATATCTAAGTGGATTCAATCTGGATGAAAATGTGGAGCAGGGAACAATTCATTTCTCTTTTACTGTTTTTAACAAATATCTTACATATCTGGAGCTCTCTTCAGATGGAATTACAAAGCTTATGCGTTCAGAGAATGGTGGAAACTGGTCTCTCCAGTGGGAGGCACTGCAGAATCAATGTGACTATTATGGAAAATGTGGACCCTTTGGGGTTTGCAAAATTTTGAAACCTCCAAAATTCGCAAAAACAGCTTCAGAATCTCCAATCAGCTGCAAGTGTTTGAAAGGGTTTGAACCAAAGCCTGACCACGAATGGAGCAAAGGAAACTGGACAGGAGGGTGTGTGAGAAAAAAAAAGGTTAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

220

Amino Acids

24.78

Weight (kDa)

8.81

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	4 - 40	6e-10	D-mannose binding lectin
S_locus_glycop	PF00954	79 - 198	1.6e-25	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018511)

Species	Orthologous Gene IDs
malus_domestica	MD05G1330300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319271
rosa_laevigata	RLG00000030496 RLG00000031312
rosa_multiflora	Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa	Rorug03G0216400
rosa_samantha	Rh1BG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	513, 530
AcuI	CTGAAG	2 cut(s)	378, 531
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	140, 454
AgsI	TTSAA	5 cut(s)	217, 310, 520, 577, 587
AhdI	GACNNNNNGTC	1 cut(s)	191
AjnI	CCWGG	3 cut(s)	40, 113, 181
AluBI	AGCT	6 cut(s)	30, 155, 388, 412, 545, 564
AluI	AGCT	6 cut(s)	30, 155, 388, 412, 545, 564
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	55, 155, 564
ApoI	RAATTY	2 cut(s)	513, 530
AspS9I	GGNCC	2 cut(s)	245, 494
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	42, 142, 551
BccI	CCATC	2 cut(s)	142, 392
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	3 cut(s)	42, 115, 183
BcoDI	GTCTC	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	156, 461
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	4 cut(s)	56, 156, 171, 565
BlsI	GCNGC	4 cut(s)	57, 157, 172, 566
Bme1390I	CCNGG	3 cut(s)	42, 115, 183
Bme18I	GGWCC	1 cut(s)	494
BmeRI	GACNNNNNGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	245, 494
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	3 cut(s)	42, 115, 183
BmrI	ACTGGG	2 cut(s)	150, 252
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	2 cut(s)	150, 252
BpmI	CTGGAG	3 cut(s)	256, 404, 431
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 454
Bse1I	ACTGG	7 cut(s)	145, 171, 239, 247, 443, 448, 626
BseBI	CCWGG	3 cut(s)	42, 115, 183
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	134, 322
BseLI	CCNNNNNNNGG	2 cut(s)	140, 454
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	7 cut(s)	145, 171, 239, 247, 443, 448, 626
BseXI	GCAGC	3 cut(s)	42, 142, 551
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	140, 454
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	130, 221
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	2 cut(s)	160, 465
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	447
BsrI	ACTGG	7 cut(s)	145, 171, 239, 247, 443, 448, 626
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	130, 221
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	3 cut(s)	42, 115, 183
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	151, 299
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	134, 322
BstKTI	GATC	2 cut(s)	133, 224
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	130, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	3 cut(s)	42, 115, 183
BstSCI	CCNGG	3 cut(s)	40, 113, 181
BstSFI	CTRYAG	2 cut(s)	156, 461
BstV1I	GCAGC	3 cut(s)	42, 142, 551
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	134, 322
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	4 cut(s)	138, 232, 455, 458
BveI	ACCTGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	245, 494
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	64, 249
CviJI	RGCY	9 cut(s)	30, 113, 155, 247, 388, 412, 545, 564, 595
CviKI_1	RGCY	9 cut(s)	30, 113, 155, 247, 388, 412, 545, 564, 595
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	151, 299
DpnI	GATC	2 cut(s)	132, 223
DpnII	GATC	2 cut(s)	130, 221
DriI	GACNNNNNGTC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	397
Eam1105I	GACNNNNNGTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	378, 531
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	40, 113, 181
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	2 cut(s)	67, 252
FatI	CATG	2 cut(s)	63, 248
FauNDI	CATATG	2 cut(s)	20, 197
Fnu4HI	GCNGC	4 cut(s)	56, 156, 171, 565
FokI	GGATG	2 cut(s)	121, 329
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	4 cut(s)	56, 156, 171, 565
GluI	GCNGC	4 cut(s)	56, 156, 171, 565
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	3 cut(s)	256, 404, 431
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	67, 252
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	306, 466, 551
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	10, 164, 275, 494
Hpy188I	TCNGA	3 cut(s)	397, 424, 550
Hpy188III	TCNNGA	4 cut(s)	90, 106, 314, 383
Hpy8I	GTNNAC	4 cut(s)	10, 164, 275, 494
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	158, 463, 510, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	151, 299
Hsp92II	CATG	2 cut(s)	67, 252
Kzo9I	GATC	2 cut(s)	130, 221
LmnI	GCTCC	3 cut(s)	328, 385, 609
Lsp1109I	GCAGC	3 cut(s)	42, 142, 551
LweI	GCATC	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	44, 473
MalI	GATC	2 cut(s)	132, 223
MboI	GATC	2 cut(s)	130, 221
MboII	GAAGA	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	4 cut(s)	339, 402, 513, 530
MnlI	CCTC	3 cut(s)	448, 534, 623
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	155, 564
MspR9I	CCNGG	3 cut(s)	42, 115, 183
MvaI	CCWGG	3 cut(s)	42, 115, 183
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	2 cut(s)	20, 197
NdeII	GATC	2 cut(s)	130, 221
NlaIII	CATG	2 cut(s)	67, 252
NlaIV	GGNNCC	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	44, 473
PaqCI	CACCTGC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	306, 466, 551
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	57, 157, 172, 566
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	40, 113, 181
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	3 cut(s)	40, 113, 181
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	245, 494
PstI	CTGCAG	2 cut(s)	160, 465
PvuII	CAGCTG	2 cut(s)	155, 564
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	56, 156, 171, 565
Sau3AI	GATC	2 cut(s)	130, 221
Sau96I	GGNCC	2 cut(s)	245, 494
ScrFI	CCNGG	3 cut(s)	42, 115, 183
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	9 cut(s)	32, 157, 163, 390, 414, 526, 547, 566, 654
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	2 cut(s)	156, 461
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	339, 402, 513, 530
SsiI	CCGC	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	40, 113, 181
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	358
TasI	AATT	4 cut(s)	339, 402, 513, 530
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	306, 466, 551
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	4 cut(s)	145, 239, 455, 465
TseFI	GTSAC	2 cut(s)	44, 473
TseI	GCWGC	3 cut(s)	55, 155, 564
Tsp45I	GTSAC	2 cut(s)	44, 473
TspDTI	ATGAA	3 cut(s)	7, 332, 333
TspRI	CASTG	4 cut(s)	145, 239, 455, 465
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	2 cut(s)	513, 530
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.