Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005072.1

Orthogroup ID

OG0018511

Physical Location & Seq

Genomic Coordinates Forward (+)

35608 .. 37824

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005072.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggttttcttcaaatgcaccgccgctgctgaaattaggattttcttgaaatgcacctctgctgctaaatctgagattagggttccggtactgccgcgtagagggagaaggagaggaacacagcagtgtgagaaggaccgtgatgaagcagatgacagcagccgaggagaggaagaaagcaagaaagaagaggttgaagtcagacgggcaacagagacgccaacacaagtgatcatttggactaatcaatcaactccattctggaaaagtgggccatgggataaatcaaagttcatcggcctcctagatatggacgatcgatatcttagtggatttaaactagatgaaaatgtagaacaaggaacacagtatttctcttatgaattatttggcactcttgcagcatatctagaagtctcttttcagggaaagttaaagcttatgtatgcaccaaatggtagagactggtcactctactgcgatacacataagaacccatgtgacatctatggagcatgtgggccttatggggtctgcaacatttctgaatctcaatcggtgactgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

189

Amino Acids

21.56

Weight (kDa)

5.62

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018511)

Species	Orthologous Gene IDs
malus_domestica	MD05G1330300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319271
rosa_laevigata	RLG00000030496 RLG00000031312
rosa_multiflora	Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa	Rorug03G0216400
rosa_samantha	Rh1BG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	21, 24, 95
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	101, 169, 310
AgsI	TTSAA	3 cut(s)	13, 49, 197
AleI	CACNNNNGTG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	209, 421, 456
AoxI	GGCC	3 cut(s)	272, 298, 521
ApeKI	GCWGC	4 cut(s)	26, 62, 159, 401
AspS9I	GGNCC	3 cut(s)	136, 272, 521
AvaII	GGWCC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	13, 49, 171, 413
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	209, 421, 456
BfaI	CTAG	3 cut(s)	305, 341, 410
BisI	GCNGC	6 cut(s)	24, 27, 63, 95, 160, 402
BlsI	GCNGC	6 cut(s)	25, 28, 64, 96, 161, 403
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	136, 272, 521
BmiI	GGNNCC	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	163, 275
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 169, 310
Bse1I	ACTGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	163, 275
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	101, 169, 310
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	13, 49, 171, 413
Bsh1236I	CGCG	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	274, 300, 523
BshVI	ATCGAT	1 cut(s)	319
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	101, 169, 310
BsmAI	GTCTC	3 cut(s)	209, 421, 456
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	274, 300, 523
Bsp143I	GATC	2 cut(s)	231, 316
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	3 cut(s)	21, 24, 95
BspANI	GGCC	3 cut(s)	274, 300, 523
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	163, 275
BssMI	GATC	2 cut(s)	231, 316
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	140, 369, 565
Bst6I	CTCTTC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	72, 326
BstDSI	CCRYGG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	234, 319
BstMAI	GTCTC	3 cut(s)	209, 421, 456
BstMBI	GATC	2 cut(s)	231, 316
BstMCI	CGRYCG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	519
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	13, 49, 171, 413
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	274, 300, 523
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	136, 272, 521
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	276, 498, 516
CviJI	RGCY	5 cut(s)	162, 274, 300, 439, 523
CviKI_1	RGCY	5 cut(s)	162, 274, 300, 439, 523
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	72, 326
DpnI	GATC	2 cut(s)	233, 318
DpnII	GATC	2 cut(s)	231, 316
DraI	TTTAAA	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	3 cut(s)	279, 501, 519
FatI	CATG	3 cut(s)	275, 497, 515
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	6 cut(s)	24, 27, 63, 95, 160, 402
Fsp4HI	GCNGC	6 cut(s)	24, 27, 63, 95, 160, 402
FspBI	CTAG	3 cut(s)	305, 341, 410
GluI	GCNGC	6 cut(s)	24, 27, 63, 95, 160, 402
HaeIII	GGCC	3 cut(s)	274, 300, 523
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	279, 501, 519
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	73, 203, 547
Hpy188III	TCNNGA	3 cut(s)	46, 262, 410
HpyAV	CCTTC	2 cut(s)	102, 127
HpyCH4III	ACNGT	3 cut(s)	140, 369, 565
HpyCH4V	TGCA	5 cut(s)	18, 54, 401, 449, 537
HpyF3I	CTNAG	2 cut(s)	72, 326
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	279, 501, 519
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	231, 316
LmnI	GCTCC	1 cut(s)	512
LpnPI	CCDG	4 cut(s)	99, 247, 410, 451
Lsp1109I	GCAGC	4 cut(s)	13, 49, 171, 413
MaeI	CTAG	3 cut(s)	305, 341, 410
MaeIII	GTNAC	3 cut(s)	468, 500, 559
MalI	GATC	2 cut(s)	233, 318
MboI	GATC	2 cut(s)	231, 316
MboII	GAAGA	2 cut(s)	185, 200
MluCI	AATT	2 cut(s)	33, 383
MnlI	CCTC	7 cut(s)	67, 95, 107, 158, 163, 184, 311
MseI	TTAA	2 cut(s)	336, 434
MslI	CAYNNNNRTG	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	231, 316
NlaIII	CATG	3 cut(s)	279, 501, 519
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	3 cut(s)	468, 500, 559
NspI	RCATGY	1 cut(s)	519
OliI	CACNNNNGTG	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	25, 28, 64, 96, 161, 403
Ple19I	CGATCG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	3 cut(s)	136, 272, 521
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	336, 434
SatI	GCNGC	6 cut(s)	24, 27, 63, 95, 160, 402
Sau3AI	GATC	2 cut(s)	231, 316
Sau96I	GGNCC	3 cut(s)	136, 272, 521
SetI	ASST	3 cut(s)	59, 195, 441
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	33, 383
SsiI	CCGC	3 cut(s)	21, 24, 95
SspMI	CTAG	3 cut(s)	305, 341, 410
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	140, 369, 565
TaqI	TCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	33, 383
TauI	GCSGC	2 cut(s)	26, 97
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	336, 434
Tru9I	TTAA	2 cut(s)	336, 434
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	3 cut(s)	468, 500, 559
TseI	GCWGC	4 cut(s)	26, 62, 159, 401
Tsp45I	GTSAC	3 cut(s)	468, 500, 559
TspDTI	ATGAA	4 cut(s)	159, 283, 360, 396
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	3 cut(s)	305, 341, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.