Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018511

Physical Location & Seq

Genomic Coordinates Reverse (-)

4029816 .. 4031305

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATTTGATCGAGCTAGATGAGCAAGTGGAACAGGGAACTATTTCTTTCTCTTATAGAGTATTTGATGAAACTCTCGCATGTATTGACATCTCTCCAGAAGGAAAGCTCAAGCTCATGCATTCAGATAATGGTGGGAACTGGCTTCTCTACTGGCAGGCACAACATAATCCACGTGACATCTATGGAGCATGGGGACCTTTTGGGGTTTGCCATAATGCTTCTGCATCTCCAATATGCAGGAGGCATCCTCAAGGCAAGGGACTGAACTTTGTAGATGAAGAACTGGCCAAGGGATATTCCTTAACAGAGGATGATGCTGTAGATAGGCCGACCACGCCGGAAGTTGTTTTCAGGCTAAGCAGTGAGACAGATGCTCCACAACCTAAGCAGCCTTCTATACTCGCTGGAGGGATTCCGTCTCATTGTTTGACTCTTCACGATAGGAAATACAATTATGTGACCATACGTGAGCTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

5.01

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	9 - 81	4e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018511)

Species	Orthologous Gene IDs
malus_domestica	MD05G1330300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319271
rosa_laevigata	RLG00000030496 RLG00000031312
rosa_multiflora	Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa	Rorug03G0216400
rosa_samantha	Rh1BG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	16, 109, 115, 475
AluI	AGCT	4 cut(s)	16, 109, 115, 475
Alw26I	GTCTC	2 cut(s)	362, 426
AoxI	GGCC	2 cut(s)	288, 329
ApeKI	GCWGC	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	290
BbrPI	CACGTG	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	362, 426
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	4 cut(s)	236, 256, 307, 364
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	2 cut(s)	81, 429
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	95, 237
BsaAI	YACGTR	2 cut(s)	176, 470
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bse1I	ACTGG	3 cut(s)	146, 158, 291
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	247, 319
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	146, 158, 291
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	290, 331
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	210, 276
BsmAI	GTCTC	2 cut(s)	362, 426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	210, 276
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	290, 331
Bsp143I	GATC	1 cut(s)	9
Bsp1720I	GCTNAGC	1 cut(s)	359
BspANI	GGCC	2 cut(s)	290, 331
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	146, 158, 291
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	441
BstBAI	YACGTR	2 cut(s)	176, 470
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	3 cut(s)	359, 387, 476
BstF5I	GGATG	2 cut(s)	247, 319
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	362, 426
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 337
BstNSI	RCATGY	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	290, 331
BtsCI	GGATG	2 cut(s)	247, 319
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	197
CviAII	CATG	3 cut(s)	81, 118, 192
CviJI	RGCY	9 cut(s)	16, 109, 115, 145, 290, 331, 358, 394, 475
CviKI_1	RGCY	9 cut(s)	16, 109, 115, 145, 290, 331, 358, 394, 475
DdeI	CTNAG	3 cut(s)	359, 387, 476
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	3 cut(s)	84, 121, 195
FaqI	GGGAC	2 cut(s)	210, 276
FatI	CATG	3 cut(s)	80, 117, 191
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	2 cut(s)	234, 326
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	2 cut(s)	81, 429
HaeIII	GGCC	2 cut(s)	290, 331
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	3 cut(s)	84, 121, 195
HinfI	GANTC	2 cut(s)	415, 433
HpaII	CCGG	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	98, 440
HpyAV	CCTTC	2 cut(s)	95, 405
HpyCH4IV	ACGT	2 cut(s)	175, 469
HpyCH4V	TGCA	3 cut(s)	121, 227, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 337
HpyF3I	CTNAG	3 cut(s)	359, 387, 476
HpySE526I	ACGT	2 cut(s)	175, 469
Hsp92II	CATG	3 cut(s)	84, 121, 195
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	188, 382
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	4 cut(s)	236, 256, 307, 364
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	2 cut(s)	175, 469
MaeIII	GTNAC	2 cut(s)	176, 460
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	293, 428
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	237, 261, 304, 404
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	305, 481
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	22, 337
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	84, 121, 195
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	176, 460
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	1 cut(s)	84
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	2 cut(s)	176, 470
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	305, 481
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	427
SetI	ASST	8 cut(s)	18, 111, 117, 178, 202, 388, 472, 477
SfaNI	GCATC	4 cut(s)	236, 256, 307, 364
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	110, 252
SmoI	CTYRAG	2 cut(s)	110, 252
Sse9I	AATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	2 cut(s)	178, 472
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	454
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	305, 481
Tru9I	TTAA	2 cut(s)	305, 481
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	176, 460
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	2 cut(s)	176, 460
TspDTI	ATGAA	2 cut(s)	84, 294
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	197
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.