Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014397

Physical Location & Seq

Genomic Coordinates Forward (+)

47208263 .. 47210744

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1356400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGACGTCATGTTTCCATGCGCTCCGTCTGCGAAAATCGAAGAGCAAACCTTTGCCAAACCCTTCCTCGTCAAAGAAATCTCAGTTTAATTCCGAAATGAACAGCTTGGAAAGGAAGAGGTTTGACAGCATGGAATCATGGTCTATGATACTGGATTCAGAAAATGTGGAAACTTGGGAGGTTTCAAAGGAGGACCAGGAGGAGTGGACTGCTGATCTTTCTCAGCTGTTTATTGGTAACAAGTTTGCGTCTGGTGCGCACAGTAGGATTTATCGTGGAATCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAAACCAGAGGGAGGAGACCAGAAGCTTACTTGAGCAGCAATTCAAGTCCGAAGTTGCCCTGCTTTCGCGCCTCTTTCATCCCAACATAGTGCAGTTTATTGCAGCTTGTAAAAAGCCTCCTGTGTACTGTATAATCACAGAATATATGTCACAAGGAACATTGAGGATGTATCTCAACAAGAAAGAGCCATATTCTCTGTCCACAGAAACAATTCTGAGGTTAGCTCTCGACATATCCCGCGGAATGGAGTATCTTCATTCACAAGGGGTGATCCACAGGGACCTCAAATCAAATAACTTGCTTCTGAATGATGATATGAGGGTTAAGGTGGCGGATTTTGGTACATCGTGTCTTGAAACGCAGTGCCAGGAAACCAAGGGAAACAAGGGGACTTATCGTTGGATGGCACCAGAAATGATCAAGGAGAAACCTTGTTCTCGGAAGGTTGATGTTTACAGTTTCGGGATTGTGCTATGGGAGCTGACAACAGCTTTGCTTCCCTTCCAAGGAATGACCCCTGTGCAGGCTGCATTTGCTGTGGCTGAGAAGAATGAACGGCCACCAATGCCGGCTAGTTGTCAACCGGCACTGGCACACCTGATCAAGCGCTGCTGGGCGCCAAACCCCGCGAAGCGGCCAGATTTCAGCGACATTGTGTCTGCTTTGGAGAAGTATGATGAGTGTGTGAAGGAGGGTCTTCCTCTCACGCACCACTCCGGCCTGGTAAGCAGAAATGTAATTCTTGAACGCTTGAAAGGCTGTGTATCCTTGAGATCCTCCGTAACTGTACAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

375

Amino Acids

42.57

Weight (kDa)

9.11

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	80 - 331	1.7e-66	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	85 - 328	4.5e-55	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62400
fragaria_vesca	FvH4_3g01140
malus_domestica	MD05G1356400.v1.1 MD10G1329500.v1.1
prunus_persica	Prupe.4G012600_v2.0.a1
pyrus_communis	pycom10g27930
rosa_chinensis	RchiOBHm_Chr5g0001701
rosa_laevigata	RLG00000030960
rosa_multiflora	Rmu_ssc0000237.1_g000023
rosa_roxburghii	Rroxscaffold_1G00071160 Rroxscaffold_1G00074620
rosa_rugosa	Rorug04G0392000
rosa_samantha	Rh5AG013400 Rh5BG016800 Rh5CG014400 Rh5DG014800
rosa_wichuraiana	Rw5G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	11
Acc16I	TGCGCA	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	733, 943
AccII	CGCG	3 cut(s)	394, 567, 956
AciI	CCGC	5 cut(s)	565, 567, 659, 954, 961
AclWI	GGATC	2 cut(s)	592, 1095
AcoI	YGGCCR	2 cut(s)	884, 962
AcyI	GRCGYC	2 cut(s)	8, 944
AfaI	GTAC	3 cut(s)	452, 670, 1116
AfeI	AGCGCT	1 cut(s)	935
AfiI	CCNNNNNNNGG	5 cut(s)	337, 571, 833, 850, 960
AgsI	TTSAA	5 cut(s)	189, 370, 683, 1073, 1081
AhdI	GACNNNNNGTC	1 cut(s)	982
AjnI	CCWGG	3 cut(s)	198, 693, 1047
AluBI	AGCT	8 cut(s)	108, 229, 299, 351, 431, 551, 808, 818
AluI	AGCT	8 cut(s)	108, 229, 299, 351, 431, 551, 808, 818
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	592, 1095
Aor51HI	AGCGCT	1 cut(s)	935
AoxI	GGCC	4 cut(s)	884, 962, 1045, 1119
ApeKI	GCWGC	4 cut(s)	361, 428, 854, 936
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	5 cut(s)	25, 262, 396, 936, 946
AspS9I	GGNCC	2 cut(s)	196, 607
AsuHPI	GGTGA	2 cut(s)	328, 607
AvaII	GGWCC	2 cut(s)	196, 607
BanI	GGYRCC	2 cut(s)	733, 943
BbsI	GAAGAC	1 cut(s)	1016
BbvI	GCAGC	4 cut(s)	373, 440, 841, 923
BccI	CCATC	1 cut(s)	724
BceAI	ACGGC	1 cut(s)	899
BciT130I	CCWGG	3 cut(s)	200, 695, 1049
BciVI	GTATCC	1 cut(s)	1102
BclI	TGATCA	2 cut(s)	744, 927
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	900
BfoI	RGCGCY	2 cut(s)	937, 947
BfuI	GTATCC	1 cut(s)	1102
BisI	GCNGC	5 cut(s)	362, 429, 855, 937, 962
BlsI	GCNGC	5 cut(s)	363, 430, 856, 938, 963
Bme1390I	CCNGG	3 cut(s)	200, 695, 1049
Bme18I	GGWCC	2 cut(s)	196, 607
BmeRI	GACNNNNNGTC	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	196, 607
BmiI	GGNNCC	3 cut(s)	608, 735, 945
BmrFI	CCNGG	3 cut(s)	200, 695, 1049
BpiI	GAAGAC	1 cut(s)	1016
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BpuEI	CTTGAG	2 cut(s)	377, 1117
BsaHI	GRCGYC	2 cut(s)	8, 944
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	565, 702, 832
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 571, 833, 850, 960
Bse118I	RCCGGY	2 cut(s)	895, 910
Bse1I	ACTGG	2 cut(s)	159, 921
BseBI	CCWGG	3 cut(s)	200, 695, 1049
BseDI	CCNNGG	3 cut(s)	565, 702, 832
BseGI	GGATG	3 cut(s)	403, 498, 735
BseLI	CCNNNNNNNGG	5 cut(s)	337, 571, 833, 850, 960
BseMII	CTCAG	4 cut(s)	98, 239, 533, 861
BseNI	ACTGG	2 cut(s)	159, 921
BseRI	GAGGAG	2 cut(s)	218, 353
BseXI	GCAGC	4 cut(s)	373, 440, 841, 923
BseYI	CCCAGC	1 cut(s)	939
BsgI	GTGCAG	2 cut(s)	437, 869
Bsh1236I	CGCG	3 cut(s)	394, 567, 956
BshFI	GGCC	4 cut(s)	886, 964, 1047, 1121
BshNI	GGYRCC	2 cut(s)	733, 943
BsiSI	CCGG	3 cut(s)	896, 911, 1044
BslFI	GGGAC	2 cut(s)	620, 730
BslI	CCNNNNNNNGG	5 cut(s)	337, 571, 833, 850, 960
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	620, 730
BsnI	GGCC	4 cut(s)	886, 964, 1047, 1121
Bso31I	GGTCTC	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	1114
Bsp143I	GATC	5 cut(s)	217, 597, 744, 927, 1100
BspACI	CCGC	5 cut(s)	565, 567, 659, 954, 961
BspANI	GGCC	4 cut(s)	886, 964, 1047, 1121
BspCNI	CTCAG	4 cut(s)	97, 238, 534, 862
BspFNI	CGCG	3 cut(s)	394, 567, 956
BspLI	GGNNCC	3 cut(s)	608, 735, 945
BspPI	GGATC	2 cut(s)	592, 1095
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	2 cut(s)	733, 943
BspTNI	GGTCTC	1 cut(s)	335
BsrFI	RCCGGY	2 cut(s)	895, 910
BsrGI	TGTACA	1 cut(s)	1114
BsrI	ACTGG	2 cut(s)	159, 921
BssAI	RCCGGY	2 cut(s)	895, 910
BssECI	CCNNGG	3 cut(s)	565, 702, 832
BssMI	GATC	5 cut(s)	217, 597, 744, 927, 1100
BssNI	GRCGYC	2 cut(s)	8, 944
BssT1I	CCWWGG	2 cut(s)	702, 832
Bst2UI	CCWGG	3 cut(s)	200, 695, 1049
Bst4CI	ACNGT	4 cut(s)	266, 455, 785, 1114
Bst6I	CTCTTC	2 cut(s)	38, 113
BstACI	GRCGYC	2 cut(s)	8, 944
BstAUI	TGTACA	1 cut(s)	1114
BstC8I	GCNNGC	2 cut(s)	852, 897
BstDEI	CTNAG	4 cut(s)	84, 225, 542, 870
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	403, 498, 735
BstFNI	CGCG	3 cut(s)	394, 567, 956
BstH2I	RGCGCY	2 cut(s)	937, 947
BstHHI	GCGC	5 cut(s)	25, 262, 396, 936, 946
BstKTI	GATC	5 cut(s)	220, 600, 747, 930, 1103
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	5 cut(s)	217, 597, 744, 927, 1100
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 257, 805, 860, 892, 1053, 1083
BstNI	CCWGG	3 cut(s)	200, 695, 1049
BstSCI	CCNGG	3 cut(s)	198, 693, 1047
BstUI	CGCG	3 cut(s)	394, 567, 956
BstV1I	GCAGC	4 cut(s)	373, 440, 841, 923
BstV2I	GAAGAC	1 cut(s)	1016
BstX2I	RGATCY	1 cut(s)	1100
BstYI	RGATCY	1 cut(s)	1100
BsuI	GTATCC	1 cut(s)	1102
BsuRI	GGCC	4 cut(s)	886, 964, 1047, 1121
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	403, 498, 735
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	695, 914
Cac8I	GCNNGC	2 cut(s)	852, 897
CfoI	GCGC	5 cut(s)	25, 262, 396, 936, 946
Cfr10I	RCCGGY	2 cut(s)	895, 910
Cfr13I	GGNCC	2 cut(s)	196, 607
Cfr42I	CCGCGG	1 cut(s)	568
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	451, 669, 1115
CviAII	CATG	4 cut(s)	12, 20, 133, 141
CviQI	GTAC	3 cut(s)	451, 669, 1115
DdeI	CTNAG	4 cut(s)	84, 225, 542, 870
DinI	GGCGCC	1 cut(s)	945
DpnI	GATC	5 cut(s)	219, 599, 746, 929, 1102
DpnII	GATC	5 cut(s)	217, 597, 744, 927, 1100
DriI	GACNNNNNGTC	1 cut(s)	982
EaeI	YGGCCR	2 cut(s)	884, 962
Eam1104I	CTCTTC	2 cut(s)	38, 113
Eam1105I	GACNNNNNGTC	1 cut(s)	982
EarI	CTCTTC	2 cut(s)	38, 113
EciI	GGCGGA	1 cut(s)	674
Eco130I	CCWWGG	2 cut(s)	702, 832
Eco147I	AGGCCT	1 cut(s)	1121
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	196, 607
Eco47III	AGCGCT	1 cut(s)	935
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	3 cut(s)	198, 693, 1047
EcoT14I	CCWWGG	2 cut(s)	702, 832
EgeI	GGCGCC	1 cut(s)	945
EheI	GGCGCC	1 cut(s)	945
ErhI	CCWWGG	2 cut(s)	702, 832
FaeI	CATG	4 cut(s)	15, 23, 136, 144
FaqI	GGGAC	2 cut(s)	620, 730
FatI	CATG	4 cut(s)	11, 19, 132, 140
FauI	CCCGC	2 cut(s)	572, 961
FbaI	TGATCA	2 cut(s)	744, 927
Fnu4HI	GCNGC	5 cut(s)	362, 429, 855, 937, 962
FokI	GGATG	3 cut(s)	390, 505, 742
Fsp4HI	GCNGC	5 cut(s)	362, 429, 855, 937, 962
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	1 cut(s)	900
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	5 cut(s)	24, 261, 395, 935, 945
GluI	GCNGC	5 cut(s)	362, 429, 855, 937, 962
GsaI	CCCAGC	1 cut(s)	943
HaeII	RGCGCY	2 cut(s)	937, 947
HaeIII	GGCC	4 cut(s)	886, 964, 1047, 1121
HapII	CCGG	3 cut(s)	896, 911, 1044
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	5 cut(s)	25, 262, 396, 936, 946
Hin1I	GRCGYC	2 cut(s)	8, 944
Hin1II	CATG	4 cut(s)	15, 23, 136, 144
Hin6I	GCGC	5 cut(s)	23, 260, 394, 934, 944
HinP1I	GCGC	5 cut(s)	23, 260, 394, 934, 944
HincII	GTYRAC	1 cut(s)	908
HindII	GTYRAC	1 cut(s)	908
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	4 cut(s)	137, 158, 282, 322
HpaII	CCGG	3 cut(s)	896, 911, 1044
HphI	GGTGA	2 cut(s)	328, 607
Hpy166II	GTNNAC	5 cut(s)	210, 451, 528, 781, 908
Hpy188I	TCNGA	6 cut(s)	97, 163, 376, 543, 633, 768
Hpy188III	TCNNGA	4 cut(s)	554, 680, 790, 1070
Hpy8I	GTNNAC	5 cut(s)	210, 451, 528, 781, 908
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	75, 763, 838, 1009
HpyCH4III	ACNGT	4 cut(s)	266, 455, 785, 1114
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	418, 428, 850, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 257, 805, 860, 892, 1053, 1083
HpyF3I	CTNAG	4 cut(s)	84, 225, 542, 870
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	2 cut(s)	8, 944
Hsp92II	CATG	4 cut(s)	15, 23, 136, 144
HspAI	GCGC	5 cut(s)	23, 260, 394, 934, 944
KasI	GGCGCC	1 cut(s)	943
KroI	GCCGGC	1 cut(s)	895
KroNI	GCCGGC	1 cut(s)	897
Ksp22I	TGATCA	2 cut(s)	744, 927
KspI	CCGCGG	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	217, 597, 744, 927, 1100
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	30, 805
Lsp1109I	GCAGC	4 cut(s)	373, 440, 841, 923
MaeI	CTAG	1 cut(s)	900
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	3 cut(s)	239, 474, 1108
MalI	GATC	5 cut(s)	219, 599, 746, 929, 1102
MboI	GATC	5 cut(s)	217, 597, 744, 927, 1100
MboII	GAAGA	5 cut(s)	55, 130, 572, 886, 1016
MflI	RGATCY	1 cut(s)	1100
MluCI	AATT	4 cut(s)	91, 365, 537, 1065
Mly113I	GGCGCC	1 cut(s)	944
MmeI	TCCRAC	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	90, 651
MspA1I	CMGCKG	2 cut(s)	229, 567
MspI	CCGG	3 cut(s)	896, 911, 1044
MspR9I	CCNGG	3 cut(s)	200, 695, 1049
MvaI	CCWGG	3 cut(s)	200, 695, 1049
MvnI	CGCG	3 cut(s)	394, 567, 956
MwoI	GCNNNNNNNGC	7 cut(s)	31, 257, 805, 860, 892, 1053, 1083
NaeI	GCCGGC	1 cut(s)	897
NarI	GGCGCC	1 cut(s)	944
NdeII	GATC	5 cut(s)	217, 597, 744, 927, 1100
NgoMIV	GCCGGC	1 cut(s)	895
NlaIII	CATG	4 cut(s)	15, 23, 136, 144
NlaIV	GGNNCC	3 cut(s)	608, 735, 945
NmuCI	GTSAC	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	1121
PciSI	GCTCTTC	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	897
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	137, 158, 282, 322
PkrI	GCNGC	5 cut(s)	363, 430, 856, 938, 963
PluTI	GGCGCC	1 cut(s)	947
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	198, 693, 1047
PspFI	CCCAGC	1 cut(s)	939
PspGI	CCWGG	3 cut(s)	198, 693, 1047
PspN4I	GGNNCC	3 cut(s)	608, 735, 945
PspPI	GGNCC	2 cut(s)	196, 607
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	1100
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	452, 670, 1116
RsaNI	GTAC	3 cut(s)	451, 669, 1115
SacII	CCGCGG	1 cut(s)	568
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	90, 651
SatI	GCNGC	5 cut(s)	362, 429, 855, 937, 962
Sau3AI	GATC	5 cut(s)	217, 597, 744, 927, 1100
Sau96I	GGNCC	2 cut(s)	196, 607
ScrFI	CCNGG	3 cut(s)	200, 695, 1049
SfoI	GGCGCC	1 cut(s)	945
Sfr303I	CCGCGG	1 cut(s)	568
SgrBI	CCGCGG	1 cut(s)	568
SinI	GGWCC	2 cut(s)	196, 607
SmlI	CTYRAG	2 cut(s)	356, 1096
SmoI	CTYRAG	2 cut(s)	356, 1096
Sse9I	AATT	4 cut(s)	91, 365, 537, 1065
SseBI	AGGCCT	1 cut(s)	1121
SsiI	CCGC	5 cut(s)	565, 567, 659, 954, 961
SspDI	GGCGCC	1 cut(s)	943
SspMI	CTAG	1 cut(s)	900
StuI	AGGCCT	1 cut(s)	1121
StyD4I	CCNGG	3 cut(s)	198, 693, 1047
StyI	CCWWGG	2 cut(s)	702, 832
TaaI	ACNGT	4 cut(s)	266, 455, 785, 1114
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	41, 555
TasI	AATT	4 cut(s)	91, 365, 537, 1065
TatI	WGTACW	2 cut(s)	450, 1114
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	4 cut(s)	137, 158, 282, 322
Tru1I	TTAA	2 cut(s)	90, 651
Tru9I	TTAA	2 cut(s)	90, 651
TscAI	CASTG	2 cut(s)	695, 921
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	4 cut(s)	361, 428, 854, 936
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	4 cut(s)	116, 392, 572, 894
TspGWI	ACGGA	2 cut(s)	17, 1096
TspRI	CASTG	2 cut(s)	695, 921
VpaK11BI	GGWCC	2 cut(s)	196, 607
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	900
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.