Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014397

Physical Location & Seq

Genomic Coordinates Forward (+)

55923257 .. 55923808

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0392000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGTGTTTGCCTCGTCGCTATTGGGTCCCTGCAAGACGGGTGTAGAACGCTATTGCTCGGAGAGTTTAGAGGGAGAGGCTTCGGACTCAAGGTTTGGACAGGGCTGGGTAGGTTTCCAGACAGATTCTCTAGGTGTGATGGCGTTGTGCAAGGATGGCGGGATCAACGTGTGCGCTGTAAAGCTGGGCGGCGGGCAGTTATGATGGTTTCGAGTGGCGGCATAGTTCTAAGGAGCTATGCGGAGGTGCGGATCTGGAGGATCCGGGCGGCGAGCCTTTTGTTTCTGGAAGGGTGCGCGGCGAGGCCAACTGGTGGGCATTGTATGCTGGGCCGGCGTGGCCTGGTTGAGTGTGGTTGGTGCGGTAGGTTATGGTGGCCTGGTGGTGGGAGTGGACGGCGTTGGACGGGCATACACGCTAAGGAGATGATGGTTGGGCCTGATCCAAATCCTGTTGGGCCTTGTGGTTTTGGGGTTTCTCCCTTTTGGGCTATCTTTTGGGCCTTTAATTGGGCTAGGGCTTTGGCCTTTGGCCCAACCCTATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

10.65

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62400
fragaria_vesca	FvH4_3g01140
malus_domestica	MD05G1356400.v1.1 MD10G1329500.v1.1
prunus_persica	Prupe.4G012600_v2.0.a1
pyrus_communis	pycom10g27930
rosa_chinensis	RchiOBHm_Chr5g0001701
rosa_laevigata	RLG00000030960
rosa_multiflora	Rmu_ssc0000237.1_g000023
rosa_roxburghii	Rroxscaffold_1G00071160 Rroxscaffold_1G00074620
rosa_rugosa	Rorug04G0392000
rosa_samantha	Rh5AG013400 Rh5BG016800 Rh5CG014400 Rh5DG014800
rosa_wichuraiana	Rw5G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	299
AciI	CCGC	9 cut(s)	160, 190, 193, 219, 242, 250, 269, 299, 363
AclWI	GGATC	5 cut(s)	171, 256, 260, 269, 437
AfiI	CCNNNNNNNGG	3 cut(s)	314, 386, 510
AflIII	ACRYGT	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	342, 379
AluBI	AGCT	2 cut(s)	185, 237
AluI	AGCT	2 cut(s)	185, 237
AlwI	GGATC	5 cut(s)	171, 256, 260, 269, 437
AoxI	GGCC	9 cut(s)	305, 331, 340, 377, 437, 458, 501, 525, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	2 cut(s)	177, 299
AspS9I	GGNCC	6 cut(s)	27, 331, 437, 458, 501, 533
AsuC2I	CCSGG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	261
BccI	CCATC	4 cut(s)	134, 150, 199, 424
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	2 cut(s)	344, 381
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	2 cut(s)	132, 516
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	191, 220, 270, 300
BlsI	GCNGC	4 cut(s)	192, 221, 271, 301
Bme1390I	CCNGG	3 cut(s)	266, 344, 381
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	6 cut(s)	27, 331, 437, 458, 501, 533
BmiI	GGNNCC	3 cut(s)	28, 29, 263
BmrFI	CCNGG	3 cut(s)	266, 344, 381
BpmI	CTGGAG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 386, 510
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	344, 381
BseGI	GGATG	1 cut(s)	161
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	314, 386, 510
BseNI	ACTGG	1 cut(s)	316
BseYI	CCCAGC	3 cut(s)	106, 185, 328
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	9 cut(s)	307, 333, 342, 379, 439, 460, 503, 527, 534
BsiSI	CCGG	2 cut(s)	265, 334
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	314, 386, 510
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	9 cut(s)	307, 333, 342, 379, 439, 460, 503, 527, 534
Bsp143I	GATC	4 cut(s)	163, 252, 261, 442
BspACI	CCGC	9 cut(s)	160, 190, 193, 219, 242, 250, 269, 299, 363
BspANI	GGCC	9 cut(s)	307, 333, 342, 379, 439, 460, 503, 527, 534
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	28, 29, 263
BspPI	GGATC	5 cut(s)	171, 256, 260, 269, 437
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	333
BssMI	GATC	4 cut(s)	163, 252, 261, 442
Bst2UI	CCWGG	2 cut(s)	344, 381
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	195, 274, 335
BstDEI	CTNAG	2 cut(s)	230, 420
BstF5I	GGATG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	177, 299
BstKTI	GATC	4 cut(s)	166, 255, 264, 445
BstMBI	GATC	4 cut(s)	163, 252, 261, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 325, 334, 339
BstNI	CCWGG	2 cut(s)	344, 381
BstSCI	CCNGG	3 cut(s)	264, 342, 379
BstUI	CGCG	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	252, 261
BstYI	RGATCY	2 cut(s)	252, 261
BsuRI	GGCC	9 cut(s)	307, 333, 342, 379, 439, 460, 503, 527, 534
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	3 cut(s)	195, 274, 335
CfoI	GCGC	2 cut(s)	177, 299
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	6 cut(s)	27, 331, 437, 458, 501, 533
DdeI	CTNAG	2 cut(s)	230, 420
DpnI	GATC	4 cut(s)	165, 254, 263, 444
DpnII	GATC	4 cut(s)	163, 252, 261, 442
Eco47I	GGWCC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	342, 379
FaiI	YATR	7 cut(s)	203, 224, 240, 326, 373, 413, 544
FaqI	GGGAC	1 cut(s)	13
FauI	CCCGC	2 cut(s)	153, 186
Fnu4HI	GCNGC	4 cut(s)	191, 220, 270, 300
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	191, 220, 270, 300
FspBI	CTAG	2 cut(s)	132, 516
GlaI	GCGC	2 cut(s)	176, 298
GluI	GCNGC	4 cut(s)	191, 220, 270, 300
GsaI	CCCAGC	3 cut(s)	110, 189, 332
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	9 cut(s)	307, 333, 342, 379, 439, 460, 503, 527, 534
HapII	CCGG	2 cut(s)	265, 334
HhaI	GCGC	2 cut(s)	177, 299
Hin6I	GCGC	2 cut(s)	175, 297
HinP1I	GCGC	2 cut(s)	175, 297
HinfI	GANTC	2 cut(s)	87, 126
HpaII	CCGG	2 cut(s)	265, 334
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	62, 86
Hpy188III	TCNNGA	3 cut(s)	119, 256, 287
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	34, 151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 325, 334, 339
HpyF3I	CTNAG	2 cut(s)	230, 420
HpySE526I	ACGT	1 cut(s)	169
HspAI	GCGC	2 cut(s)	175, 297
KflI	GGGWCCC	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	333
KroNI	GCCGGC	1 cut(s)	335
Kzo9I	GATC	4 cut(s)	163, 252, 261, 442
LmnI	GCTCC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	132, 516
MaeII	ACGT	1 cut(s)	169
MalI	GATC	4 cut(s)	165, 254, 263, 444
MboI	GATC	4 cut(s)	163, 252, 261, 442
MflI	RGATCY	2 cut(s)	252, 261
MluCI	AATT	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	23, 65, 71, 238, 252, 297
MroNI	GCCGGC	1 cut(s)	333
MseI	TTAA	1 cut(s)	507
MspI	CCGG	2 cut(s)	265, 334
MspR9I	CCNGG	3 cut(s)	266, 344, 381
MvaI	CCWGG	2 cut(s)	344, 381
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	157, 325, 334, 339
NaeI	GCCGGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	4 cut(s)	163, 252, 261, 442
NgoMIV	GCCGGC	1 cut(s)	333
NlaIV	GGNNCC	3 cut(s)	28, 29, 263
PdiI	GCCGGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	192, 221, 271, 301
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	342, 379
PspFI	CCCAGC	3 cut(s)	106, 185, 328
PspGI	CCWGG	2 cut(s)	342, 379
PspN4I	GGNNCC	3 cut(s)	28, 29, 263
PspPI	GGNCC	6 cut(s)	27, 331, 437, 458, 501, 533
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	252, 261
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	4 cut(s)	191, 220, 270, 300
Sau3AI	GATC	4 cut(s)	163, 252, 261, 442
Sau96I	GGNCC	6 cut(s)	27, 331, 437, 458, 501, 533
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	3 cut(s)	266, 344, 381
SetI	ASST	8 cut(s)	96, 116, 137, 172, 187, 239, 249, 371
SfiI	GGCCNNNNNGGCC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	9 cut(s)	160, 190, 193, 219, 242, 250, 269, 299, 363
SspMI	CTAG	2 cut(s)	132, 516
StyD4I	CCNGG	3 cut(s)	264, 342, 379
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	508
TauI	GCSGC	4 cut(s)	193, 222, 272, 302
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	27
XspI	CTAG	2 cut(s)	132, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.