Rh5BG016800

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
1191146 .. 1194243
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG016800.1

Sequence Viewer

Length: 1122 bp
ATGGCGACCTCATGTTTCCATGCACTTCGTCTCCGAAAGTCGAAGGGCAAGTCGTTGCCAAATCCGTCGACGTCGAAAACCCAGTATAATTCAGATATGGACAGCATGGAGAGGAAGAGATTCGATAGCTTGGAGTCATGGTCGATGATATTGGAGTCGGAAAATGTGGAGACTTGGGAGGTGGCCAAGGAGGACCAGGAGGAGTGGACTGCTGATCTTTCTCAGCTGTTCATTGGTAACAAATTTGCTTCTGGAGCACACAGTCGGATTTACCGTGGGATTTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAAACCAGAGGGAGGAGACCAGAACCTTACTTGAGCAGCAATTCAAGTCTGAAGTTGCTCTGCTTTCGCGGCTATTTCATCCCAACATAGTGCAGTTTATTGCAGCTTGTAAAAAGCCACCTGTGTACTGTATCATCACAGAGTATATGTCACAAGGAACACTGAGGATGTATCTCAACAAGAAGGAGCCTTATTCTCTTTCGACTGAAACGATTCTGAGGTTAGCGCTTGACATATCCCGGGGAATGGAGTATCTTCATTCTCAAGGAGTGATCCACAGGGACCTGAAGTCAAATAATTTGCTTCTCAATGATGATATGAGGGTCAAGGTTGCGGATTTTGGCACATCGTGCCTTGAAACGCAGTGCCAGGAGACGAAAGGAAACAAGGGGACTTATCGTTGGATGGCACCGGAGATGATCAAGGAGAAACCTTGTTCTCGGAAAGTTGATGTTTATAGCTTTGGAATTGTGCTGTGGGAGCTGACAACGGCTTTGCTTCCTTTTCAAGGAATGACTCCTGTGCAGGCTGCATTTGCTGTGGCTGAGAAGAATGAACGGCCTCCAATGCCGGCTAGTTGTCAACCGGCACTAGCACACCTCATCAAGCGCTGTTGGGCACCAAACCCCTCGAAGCGACCAGATTTTAGCGATATTGTGTCTGCTTTGGAGAAGTATGATGAGTGTGTGAAGGAAGGTCTTCCACTCACACACCACTCGGGGCTGGTAAGTCGAAATGTCATCCTCGAACGCTTGAAAGGTTGTGTATCTTTGAGCTCTTCCATACCTGTACATGCCTGA

Protein Analysis

373

Amino Acids

42.41

Weight (kDa)

8.88

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 79 - 330 1.5e-66 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 84 - 327 2.2e-55 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62400
fragaria_vesca FvH4_3g01140
malus_domestica MD05G1356400.v1.1 MD10G1329500.v1.1
prunus_persica Prupe.4G012600_v2.0.a1
pyrus_communis pycom10g27930
rosa_chinensis RchiOBHm_Chr5g0001701
rosa_laevigata RLG00000030960
rosa_multiflora Rmu_ssc0000237.1_g000023
rosa_roxburghii Rroxscaffold_1G00071160 Rroxscaffold_1G00074620
rosa_rugosa Rorug04G0392000
rosa_samantha Rh5AG013400 Rh5BG016800 Rh5CG014400 Rh5DG014800
rosa_wichuraiana Rw5G001300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 730, 940
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 391, 656
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 393, 629
AcyI GRCGYC 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 672
AfaI GTAC 2 cut(s) 449, 1113
AfeI AGCGCT 2 cut(s) 549, 932
AfiI CCNNNNNNNGG 3 cut(s) 334, 568, 830
AgsI TTSAA 4 cut(s) 367, 680, 830, 1078
AhdI GACNNNNNGTC 1 cut(s) 610
AjnI CCWGG 2 cut(s) 195, 690
AluBI AGCT 7 cut(s) 129, 226, 296, 428, 783, 805, 1098
AluI AGCT 7 cut(s) 129, 226, 296, 428, 783, 805, 1098
Alw21I GWGCWC 2 cut(s) 259, 1100
Alw26I GTCTC 4 cut(s) 35, 164, 332, 689
AlwI GGATC 1 cut(s) 589
Ama87I CYCGRG 2 cut(s) 561, 1039
Aor51HI AGCGCT 2 cut(s) 549, 932
AoxI GGCC 2 cut(s) 183, 881
ApeKI GCWGC 3 cut(s) 358, 425, 851
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 799, 831
Asp700I GAANNNNTTC 3 cut(s) 119, 534, 1020
AspLEI GCGC 2 cut(s) 550, 933
AspS9I GGNCC 2 cut(s) 193, 604
AsuC2I CCSGG 2 cut(s) 562, 563
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 561, 1039
AvaII GGWCC 2 cut(s) 193, 604
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 2 cut(s) 730, 940
BanII GRGCYC 1 cut(s) 1100
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 259, 1100
BbvI GCAGC 3 cut(s) 370, 437, 838
BccI CCATC 1 cut(s) 721
BceAI ACGGC 2 cut(s) 828, 896
BciT130I CCWGG 2 cut(s) 197, 692
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 2 cut(s) 562, 563
BcoDI GTCTC 4 cut(s) 35, 164, 332, 689
BfaI CTAG 2 cut(s) 897, 914
BfoI RGCGCY 2 cut(s) 551, 934
BisI GCNGC 4 cut(s) 359, 392, 426, 852
BlsI GCNGC 4 cut(s) 360, 393, 427, 853
Bme1390I CCNGG 4 cut(s) 197, 562, 563, 692
Bme18I GGWCC 2 cut(s) 193, 604
BmeRI GACNNNNNGTC 1 cut(s) 610
BmeT110I CYCGRG 2 cut(s) 561, 1039
BmgT120I GGNCC 2 cut(s) 193, 604
BmiI GGNNCC 4 cut(s) 510, 605, 732, 942
BmrFI CCNGG 4 cut(s) 197, 562, 563, 692
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 1013
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 374, 570
BpuMI CCSGG 2 cut(s) 562, 563
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 186, 274, 561, 562
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 568, 830
Bse118I RCCGGY 2 cut(s) 892, 907
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 197, 692
BseDI CCNNGG 4 cut(s) 186, 274, 561, 562
BseGI GGATG 4 cut(s) 400, 495, 732, 1062
BseLI CCNNNNNNNGG 3 cut(s) 334, 568, 830
BseMII CTCAG 4 cut(s) 236, 476, 530, 858
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 215, 350
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 3 cut(s) 370, 437, 838
BsgI GTGCAG 2 cut(s) 434, 866
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 185, 883
BshNI GGYRCC 2 cut(s) 730, 940
BsiHKAI GWGCWC 2 cut(s) 259, 1100
BsiHKCI CYCGRG 2 cut(s) 561, 1039
BsiSI CCGG 4 cut(s) 562, 734, 893, 908
BslFI GGGAC 2 cut(s) 617, 727
BslI CCNNNNNNNGG 3 cut(s) 334, 568, 830
BsmAI GTCTC 4 cut(s) 35, 164, 332, 689
BsmBI CGTCTC 2 cut(s) 35, 689
BsmFI GGGAC 2 cut(s) 617, 727
BsnI GGCC 2 cut(s) 185, 883
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 561, 1039
Bsp1286I GDGCHC 3 cut(s) 259, 943, 1100
Bsp1407I TGTACA 1 cut(s) 1111
Bsp143I GATC 3 cut(s) 214, 594, 741
BspACI CCGC 2 cut(s) 391, 656
BspANI GGCC 2 cut(s) 185, 883
BspCNI CTCAG 4 cut(s) 235, 477, 531, 859
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 4 cut(s) 510, 605, 732, 942
BspPI GGATC 1 cut(s) 589
BspQI GCTCTTC 1 cut(s) 1105
BspT107I GGYRCC 2 cut(s) 730, 940
BspTNI GGTCTC 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 892, 907
BsrGI TGTACA 1 cut(s) 1111
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 2 cut(s) 892, 907
BssECI CCNNGG 4 cut(s) 186, 274, 561, 562
BssMI GATC 3 cut(s) 214, 594, 741
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 197, 692
Bst4CI ACNGT 3 cut(s) 263, 275, 452
Bst6I CTCTTC 2 cut(s) 110, 1105
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 1111
BstC8I GCNNGC 2 cut(s) 849, 894
BstDEI CTNAG 4 cut(s) 222, 485, 539, 867
BstDSI CCRYGG 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 4 cut(s) 400, 495, 732, 1062
BstFNI CGCG 1 cut(s) 391
BstH2I RGCGCY 2 cut(s) 551, 934
BstHHI GCGC 2 cut(s) 550, 933
BstKTI GATC 3 cut(s) 217, 597, 744
BstMAI GTCTC 4 cut(s) 35, 164, 332, 689
BstMBI GATC 3 cut(s) 214, 594, 741
BstMWI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 889
BstNI CCWGG 2 cut(s) 197, 692
BstNSI RCATGY 1 cut(s) 1118
BstSCI CCNGG 4 cut(s) 195, 560, 561, 690
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 370, 437, 838
BstV2I GAAGAC 1 cut(s) 1013
BsuRI GGCC 2 cut(s) 185, 883
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 4 cut(s) 400, 495, 732, 1062
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 2 cut(s) 482, 692
Cac8I GCNNGC 2 cut(s) 849, 894
CfoI GCGC 2 cut(s) 550, 933
Cfr10I RCCGGY 2 cut(s) 892, 907
Cfr13I GGNCC 2 cut(s) 193, 604
Cfr9I CCCGGG 1 cut(s) 561
Csp6I GTAC 2 cut(s) 448, 1112
CviAII CATG 5 cut(s) 12, 20, 106, 138, 1115
CviQI GTAC 2 cut(s) 448, 1112
DdeI CTNAG 4 cut(s) 222, 485, 539, 867
DpnI GATC 3 cut(s) 216, 596, 743
DpnII GATC 3 cut(s) 214, 594, 741
DraIII CACNNNGTG 1 cut(s) 672
DriI GACNNNNNGTC 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 110, 1105
Eam1105I GACNNNNNGTC 1 cut(s) 610
EarI CTCTTC 2 cut(s) 110, 1105
Ecl136II GAGCTC 1 cut(s) 1098
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 1100
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 193, 604
Eco47III AGCGCT 2 cut(s) 549, 932
Eco53kI GAGCTC 1 cut(s) 1098
Eco57I CTGAAG 2 cut(s) 393, 629
Eco88I CYCGRG 2 cut(s) 561, 1039
EcoICRI GAGCTC 1 cut(s) 1098
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO109I RGGNCCY 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 195, 690
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 1100
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 2 cut(s) 35, 689
FaeI CATG 5 cut(s) 15, 23, 109, 141, 1118
FaqI GGGAC 2 cut(s) 617, 727
FatI CATG 5 cut(s) 11, 19, 105, 137, 1114
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 4 cut(s) 359, 392, 426, 852
FokI GGATG 4 cut(s) 387, 502, 739, 1049
FriOI GRGCYC 1 cut(s) 1100
Fsp4HI GCNGC 4 cut(s) 359, 392, 426, 852
FspBI CTAG 2 cut(s) 897, 914
GlaI GCGC 2 cut(s) 549, 932
GluI GCNGC 4 cut(s) 359, 392, 426, 852
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 2 cut(s) 551, 934
HaeIII GGCC 2 cut(s) 185, 883
HapII CCGG 4 cut(s) 562, 734, 893, 908
HhaI GCGC 2 cut(s) 550, 933
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 5 cut(s) 15, 23, 109, 141, 1118
Hin6I GCGC 2 cut(s) 548, 931
HinP1I GCGC 2 cut(s) 548, 931
HincII GTYRAC 2 cut(s) 69, 905
HindII GTYRAC 2 cut(s) 69, 905
HinfI GANTC 6 cut(s) 120, 134, 155, 319, 535, 838
HpaII CCGG 4 cut(s) 562, 734, 893, 908
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 4 cut(s) 69, 207, 448, 905
Hpy188I TCNGA 7 cut(s) 35, 94, 160, 267, 373, 540, 765
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 4 cut(s) 69, 207, 448, 905
Hpy99I CGWCG 3 cut(s) 70, 73, 76
HpyAV CCTTC 4 cut(s) 37, 499, 1006, 1010
HpyCH4III ACNGT 3 cut(s) 263, 275, 452
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 5 cut(s) 23, 415, 425, 847, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 889
HpyF3I CTNAG 4 cut(s) 222, 485, 539, 867
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 5 cut(s) 15, 23, 109, 141, 1118
HspAI GCGC 2 cut(s) 548, 931
KroI GCCGGC 1 cut(s) 892
KroNI GCCGGC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 3 cut(s) 214, 594, 741
LguI GCTCTTC 1 cut(s) 1105
LmnI GCTCC 3 cut(s) 254, 508, 802
Lsp1109I GCAGC 3 cut(s) 370, 437, 838
MaeI CTAG 2 cut(s) 897, 914
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 236, 471
MalI GATC 3 cut(s) 216, 596, 743
MboI GATC 3 cut(s) 214, 594, 741
MboII GAAGA 5 cut(s) 127, 569, 883, 1013, 1092
MhlI GDGCHC 3 cut(s) 259, 943, 1100
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 5 cut(s) 88, 242, 362, 619, 789
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 3 cut(s) 143, 164, 832
MmeI TCCRAC 3 cut(s) 138, 245, 704
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 892
MroXI GAANNNNTTC 3 cut(s) 119, 534, 1020
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 4 cut(s) 562, 734, 893, 908
MspR9I CCNGG 4 cut(s) 197, 562, 563, 692
MvaI CCWGG 2 cut(s) 197, 692
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 889
NaeI GCCGGC 1 cut(s) 894
NciI CCSGG 2 cut(s) 562, 563
NdeII GATC 3 cut(s) 214, 594, 741
NgoMIV GCCGGC 1 cut(s) 892
NlaIII CATG 5 cut(s) 15, 23, 109, 141, 1118
NlaIV GGNNCC 4 cut(s) 510, 605, 732, 942
NmuCI GTSAC 1 cut(s) 471
NspI RCATGY 1 cut(s) 1118
PciSI GCTCTTC 1 cut(s) 1105
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 530
PdiI GCCGGC 1 cut(s) 894
PdmI GAANNNNTTC 3 cut(s) 119, 534, 1020
PfeI GAWTC 3 cut(s) 120, 319, 535
PkrI GCNGC 4 cut(s) 360, 393, 427, 853
PleI GAGTC 3 cut(s) 142, 163, 832
PpsI GAGTC 3 cut(s) 142, 163, 832
PpuMI RGGWCCY 1 cut(s) 604
Psp124BI GAGCTC 1 cut(s) 1100
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 195, 690
PspGI CCWGG 2 cut(s) 195, 690
PspN4I GGNNCC 4 cut(s) 510, 605, 732, 942
PspPI GGNCC 2 cut(s) 193, 604
PspPPI RGGWCCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 2 cut(s) 449, 1113
RsaNI GTAC 2 cut(s) 448, 1112
SacI GAGCTC 1 cut(s) 1100
SalI GTCGAC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 1105
SatI GCNGC 4 cut(s) 359, 392, 426, 852
Sau3AI GATC 3 cut(s) 214, 594, 741
Sau96I GGNCC 2 cut(s) 193, 604
SchI GAGTC 3 cut(s) 143, 164, 832
ScrFI CCNGG 4 cut(s) 197, 562, 563, 692
SduI GDGCHC 3 cut(s) 259, 943, 1100
SgrDI CGTCGACG 1 cut(s) 67
SinI GGWCC 2 cut(s) 193, 604
SmaI CCCGGG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 353, 585
SmoI CTYRAG 2 cut(s) 353, 585
Sse9I AATT 5 cut(s) 88, 242, 362, 619, 789
SsiI CCGC 2 cut(s) 391, 656
SspMI CTAG 2 cut(s) 897, 914
SstI GAGCTC 1 cut(s) 1100
StyD4I CCNGG 4 cut(s) 195, 560, 561, 690
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 263, 275, 452
TaiI ACGT 1 cut(s) 74
TaqI TCGA 9 cut(s) 41, 68, 74, 123, 143, 524, 953, 1054, 1068
TasI AATT 5 cut(s) 88, 242, 362, 619, 789
TatI WGTACW 2 cut(s) 447, 1111
TauI GCSGC 1 cut(s) 394
TfiI GAWTC 3 cut(s) 120, 319, 535
TscAI CASTG 2 cut(s) 489, 692
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 3 cut(s) 358, 425, 851
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 4 cut(s) 220, 389, 569, 891
TspGWI ACGGA 1 cut(s) 54
TspMI CCCGGG 1 cut(s) 561
TspRI CASTG 2 cut(s) 489, 692
VpaK11BI GGWCC 2 cut(s) 193, 604
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 1118
XmaI CCCGGG 1 cut(s) 561
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 3 cut(s) 119, 534, 1020
XspI CTAG 2 cut(s) 897, 914
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.