Rroxscaffold_1G00071160

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014397
Physical Location & Seq
Reverse (-)
92058515 .. 92060858
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071160.1

Sequence Viewer

Length: 1170 bp
ATGGCGACCTCATGTTTCCATGCACTTCGTCTCCGAAAGTCGAAGGGCAAGTCGTTGCCAAATCCGTCGACGTCGAAAACCCAGTACAATTCAGATATGGACAGCATGGAGAGGAAGAGATTCGATAGCTTGGAGTCATGGTCGATGATATTGGAGTCGGAAAATGTGGAGACTTGGGAGGTGGCCAAGGAGGACCAGGAGGAGTGGACTGCTGATCTTTCTCAGCTGTTCATTGGTAACAAATTTGCTTCTGGAGCACACAGTCGGATTTACCGTGGGATTTACAAACAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAAACCAGAGGGAGGAGACCAGAACCTTACTTGAGCAGCAATTCAAGTCTGAAGTTGCTCTGCTTTCGCGGCTATTTCATCCCAACATAGTGCAGTTTATTGCAGCTTGTAAAAAGCCACCTGTGTACTGTATCATCACAGAGTATATGTCACAAGGAACACTGAGGATGTATCTCAACAAGAAAGAGCCTTATTCTCTTTCGACTGAAACGATTCTGAGGTTAGCGCTTGACATATCCCGGGGAATGGAGTATCTTCATTCTCAAGGAGTGATCCACAGGGACCTGAAGTCAAATAATTTGCTTCTCAATGATGATATGAGGGTCAAGGTTGCGGATTTTGGCACATCGTGCCTTGAAACGCAGTGCCAGGAGACGAAAGGAAACAAGGGGACTTATCGTTGGATGGCACCGGAGATGATCAAGGAGAAACCTTGTTCTCGGAAAGTTGATGTTTATAGCTTTGGAATTGTGCTGTGGGAGCTGACAACGGCTTTGCTTCCTTTTCAAGGAATGACTCCTGTGCAGGCTGCATTTGCTGTGGCTGAGAAGTTGAGCAGTAAGTTAGGTTGTGATGATGTTCCGATGTCCCGTCGGATTAATGAACGGCCTCCAATGCCAGCTAGTTGTCAGCCGGCACTTGCACACCTCATCAAGCGCTGTTGGGCACCAAACCCCTCGAAGCGACCAGATTTTAGCGATATTGTGTCTGCTTTGGAGAAGTATGATGAGTGTGTGAAGGAAGGTCTTCCACTCACACACCACTCGGGGCTGGTAAGTCGAAATGTCATCCTCGAACGCTTGAAAGGTTGTGTATCTTTGAGCTCTTCCATACCTGTACATGCCTGA

Protein Analysis

389

Amino Acids

44.17

Weight (kDa)

8.92

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 79 - 346 5.3e-61 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 84 - 343 3.3e-55 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62400
fragaria_vesca FvH4_3g01140
malus_domestica MD05G1356400.v1.1 MD10G1329500.v1.1
prunus_persica Prupe.4G012600_v2.0.a1
pyrus_communis pycom10g27930
rosa_chinensis RchiOBHm_Chr5g0001701
rosa_laevigata RLG00000030960
rosa_multiflora Rmu_ssc0000237.1_g000023
rosa_roxburghii Rroxscaffold_1G00071160 Rroxscaffold_1G00074620
rosa_rugosa Rorug04G0392000
rosa_samantha Rh5AG013400 Rh5BG016800 Rh5CG014400 Rh5DG014800
rosa_wichuraiana Rw5G001300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 730, 988
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 391, 656
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 393, 629
AcyI GRCGYC 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 672
AfaI GTAC 3 cut(s) 86, 449, 1161
AfeI AGCGCT 2 cut(s) 549, 980
AfiI CCNNNNNNNGG 3 cut(s) 334, 568, 830
AgsI TTSAA 4 cut(s) 367, 680, 830, 1126
AhdI GACNNNNNGTC 1 cut(s) 610
AjnI CCWGG 2 cut(s) 195, 690
AluBI AGCT 8 cut(s) 129, 226, 296, 428, 783, 805, 944, 1146
AluI AGCT 8 cut(s) 129, 226, 296, 428, 783, 805, 944, 1146
Alw21I GWGCWC 2 cut(s) 259, 1148
Alw26I GTCTC 4 cut(s) 35, 164, 332, 689
AlwI GGATC 1 cut(s) 589
Ama87I CYCGRG 2 cut(s) 561, 1087
Aor51HI AGCGCT 2 cut(s) 549, 980
AoxI GGCC 2 cut(s) 183, 929
ApeKI GCWGC 3 cut(s) 358, 425, 851
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 799, 831
AseI ATTAAT 1 cut(s) 921
Asp700I GAANNNNTTC 3 cut(s) 119, 534, 1068
AspLEI GCGC 2 cut(s) 550, 981
AspS9I GGNCC 2 cut(s) 193, 604
AsuC2I CCSGG 2 cut(s) 562, 563
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 561, 1087
AvaII GGWCC 2 cut(s) 193, 604
BaeGI GKGCMC 1 cut(s) 991
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 2 cut(s) 730, 988
BanII GRGCYC 1 cut(s) 1148
BbsI GAAGAC 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 259, 1148
BbvI GCAGC 3 cut(s) 370, 437, 838
BccI CCATC 1 cut(s) 721
BceAI ACGGC 2 cut(s) 828, 944
BciT130I CCWGG 2 cut(s) 197, 692
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 2 cut(s) 562, 563
BcoDI GTCTC 4 cut(s) 35, 164, 332, 689
BfaI CTAG 1 cut(s) 945
BfoI RGCGCY 2 cut(s) 551, 982
BisI GCNGC 4 cut(s) 359, 392, 426, 852
BlsI GCNGC 4 cut(s) 360, 393, 427, 853
Bme1390I CCNGG 4 cut(s) 197, 562, 563, 692
Bme18I GGWCC 2 cut(s) 193, 604
BmeRI GACNNNNNGTC 1 cut(s) 610
BmeT110I CYCGRG 2 cut(s) 561, 1087
BmgT120I GGNCC 2 cut(s) 193, 604
BmiI GGNNCC 3 cut(s) 605, 732, 990
BmrFI CCNGG 4 cut(s) 197, 562, 563, 692
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 1061
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 374, 570
BpuMI CCSGG 2 cut(s) 562, 563
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 186, 274, 561, 562
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 568, 830
Bse118I RCCGGY 1 cut(s) 955
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 197, 692
BseDI CCNNGG 4 cut(s) 186, 274, 561, 562
BseGI GGATG 4 cut(s) 400, 495, 732, 1110
BseLI CCNNNNNNNGG 3 cut(s) 334, 568, 830
BseMII CTCAG 4 cut(s) 236, 476, 530, 858
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 215, 350
BseSI GKGCMC 1 cut(s) 991
BseXI GCAGC 3 cut(s) 370, 437, 838
BsgI GTGCAG 2 cut(s) 434, 866
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 185, 931
BshNI GGYRCC 2 cut(s) 730, 988
BsiHKAI GWGCWC 2 cut(s) 259, 1148
BsiHKCI CYCGRG 2 cut(s) 561, 1087
BsiSI CCGG 3 cut(s) 562, 734, 956
BslFI GGGAC 3 cut(s) 617, 727, 895
BslI CCNNNNNNNGG 3 cut(s) 334, 568, 830
BsmAI GTCTC 4 cut(s) 35, 164, 332, 689
BsmBI CGTCTC 2 cut(s) 35, 689
BsmFI GGGAC 3 cut(s) 617, 727, 895
BsnI GGCC 2 cut(s) 185, 931
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 561, 1087
Bsp1286I GDGCHC 3 cut(s) 259, 991, 1148
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 3 cut(s) 214, 594, 741
BspACI CCGC 2 cut(s) 391, 656
BspANI GGCC 2 cut(s) 185, 931
BspCNI CTCAG 4 cut(s) 235, 477, 531, 859
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 605, 732, 990
BspPI GGATC 1 cut(s) 589
BspQI GCTCTTC 1 cut(s) 1153
BspT107I GGYRCC 2 cut(s) 730, 988
BspTNI GGTCTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 955
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 955
BssECI CCNNGG 4 cut(s) 186, 274, 561, 562
BssMI GATC 3 cut(s) 214, 594, 741
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 197, 692
Bst4CI ACNGT 3 cut(s) 263, 275, 452
Bst6I CTCTTC 2 cut(s) 110, 1153
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 1159
BstC8I GCNNGC 3 cut(s) 849, 942, 957
BstDEI CTNAG 4 cut(s) 222, 485, 539, 867
BstDSI CCRYGG 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 4 cut(s) 400, 495, 732, 1110
BstFNI CGCG 1 cut(s) 391
BstH2I RGCGCY 2 cut(s) 551, 982
BstHHI GCGC 2 cut(s) 550, 981
BstKTI GATC 3 cut(s) 217, 597, 744
BstMAI GTCTC 4 cut(s) 35, 164, 332, 689
BstMBI GATC 3 cut(s) 214, 594, 741
BstMWI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 937
BstNI CCWGG 2 cut(s) 197, 692
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 4 cut(s) 195, 560, 561, 690
BstSLI GKGCMC 1 cut(s) 991
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 370, 437, 838
BstV2I GAAGAC 1 cut(s) 1061
BsuRI GGCC 2 cut(s) 185, 931
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 4 cut(s) 400, 495, 732, 1110
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 2 cut(s) 482, 692
Cac8I GCNNGC 3 cut(s) 849, 942, 957
CfoI GCGC 2 cut(s) 550, 981
Cfr10I RCCGGY 1 cut(s) 955
Cfr13I GGNCC 2 cut(s) 193, 604
Cfr9I CCCGGG 1 cut(s) 561
Csp6I GTAC 3 cut(s) 85, 448, 1160
CviAII CATG 5 cut(s) 12, 20, 106, 138, 1163
CviQI GTAC 3 cut(s) 85, 448, 1160
DdeI CTNAG 4 cut(s) 222, 485, 539, 867
DpnI GATC 3 cut(s) 216, 596, 743
DpnII GATC 3 cut(s) 214, 594, 741
DraIII CACNNNGTG 1 cut(s) 672
DriI GACNNNNNGTC 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 110, 1153
Eam1105I GACNNNNNGTC 1 cut(s) 610
EarI CTCTTC 2 cut(s) 110, 1153
Ecl136II GAGCTC 1 cut(s) 1146
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 1148
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 193, 604
Eco47III AGCGCT 2 cut(s) 549, 980
Eco53kI GAGCTC 1 cut(s) 1146
Eco57I CTGAAG 2 cut(s) 393, 629
Eco88I CYCGRG 2 cut(s) 561, 1087
EcoICRI GAGCTC 1 cut(s) 1146
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO109I RGGNCCY 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 195, 690
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 1148
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 2 cut(s) 35, 689
FaeI CATG 5 cut(s) 15, 23, 109, 141, 1166
FaqI GGGAC 3 cut(s) 617, 727, 895
FatI CATG 5 cut(s) 11, 19, 105, 137, 1162
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 4 cut(s) 359, 392, 426, 852
FokI GGATG 4 cut(s) 387, 502, 739, 1097
FriOI GRGCYC 1 cut(s) 1148
Fsp4HI GCNGC 4 cut(s) 359, 392, 426, 852
FspBI CTAG 1 cut(s) 945
GlaI GCGC 2 cut(s) 549, 980
GluI GCNGC 4 cut(s) 359, 392, 426, 852
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 2 cut(s) 551, 982
HaeIII GGCC 2 cut(s) 185, 931
HapII CCGG 3 cut(s) 562, 734, 956
HhaI GCGC 2 cut(s) 550, 981
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 5 cut(s) 15, 23, 109, 141, 1166
Hin6I GCGC 2 cut(s) 548, 979
HinP1I GCGC 2 cut(s) 548, 979
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 6 cut(s) 120, 134, 155, 319, 535, 838
HpaII CCGG 3 cut(s) 562, 734, 956
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 69, 207, 448
Hpy188I TCNGA 9 cut(s) 35, 94, 160, 267, 373, 540, 765, 906, 918
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 3 cut(s) 69, 207, 448
Hpy99I CGWCG 4 cut(s) 70, 73, 76, 918
HpyAV CCTTC 3 cut(s) 37, 1054, 1058
HpyCH4III ACNGT 3 cut(s) 263, 275, 452
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 6 cut(s) 23, 415, 425, 847, 854, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 937
HpyF3I CTNAG 4 cut(s) 222, 485, 539, 867
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 5 cut(s) 15, 23, 109, 141, 1166
HspAI GCGC 2 cut(s) 548, 979
KroI GCCGGC 1 cut(s) 955
KroNI GCCGGC 1 cut(s) 957
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 3 cut(s) 214, 594, 741
LguI GCTCTTC 1 cut(s) 1153
LmnI GCTCC 2 cut(s) 254, 802
Lsp1109I GCAGC 3 cut(s) 370, 437, 838
MaeI CTAG 1 cut(s) 945
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 236, 471
MalI GATC 3 cut(s) 216, 596, 743
MboI GATC 3 cut(s) 214, 594, 741
MboII GAAGA 4 cut(s) 127, 569, 1061, 1140
MhlI GDGCHC 3 cut(s) 259, 991, 1148
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 5 cut(s) 88, 242, 362, 619, 789
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 3 cut(s) 143, 164, 832
MmeI TCCRAC 4 cut(s) 138, 245, 704, 896
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 955
MroXI GAANNNNTTC 3 cut(s) 119, 534, 1068
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 3 cut(s) 562, 734, 956
MspR9I CCNGG 4 cut(s) 197, 562, 563, 692
MvaI CCWGG 2 cut(s) 197, 692
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 6 cut(s) 254, 391, 672, 802, 857, 937
NaeI GCCGGC 1 cut(s) 957
NciI CCSGG 2 cut(s) 562, 563
NdeII GATC 3 cut(s) 214, 594, 741
NgoMIV GCCGGC 1 cut(s) 955
NlaIII CATG 5 cut(s) 15, 23, 109, 141, 1166
NlaIV GGNNCC 3 cut(s) 605, 732, 990
NmuCI GTSAC 1 cut(s) 471
NspI RCATGY 1 cut(s) 1166
PciSI GCTCTTC 1 cut(s) 1153
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 530
PdiI GCCGGC 1 cut(s) 957
PdmI GAANNNNTTC 3 cut(s) 119, 534, 1068
PfeI GAWTC 3 cut(s) 120, 319, 535
PkrI GCNGC 4 cut(s) 360, 393, 427, 853
PleI GAGTC 3 cut(s) 142, 163, 832
PpsI GAGTC 3 cut(s) 142, 163, 832
PpuMI RGGWCCY 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 1148
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 195, 690
PspGI CCWGG 2 cut(s) 195, 690
PspN4I GGNNCC 3 cut(s) 605, 732, 990
PspPI GGNCC 2 cut(s) 193, 604
PspPPI RGGWCCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 3 cut(s) 86, 449, 1161
RsaNI GTAC 3 cut(s) 85, 448, 1160
SacI GAGCTC 1 cut(s) 1148
SalI GTCGAC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 1153
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 4 cut(s) 359, 392, 426, 852
Sau3AI GATC 3 cut(s) 214, 594, 741
Sau96I GGNCC 2 cut(s) 193, 604
SchI GAGTC 3 cut(s) 143, 164, 832
ScrFI CCNGG 4 cut(s) 197, 562, 563, 692
SduI GDGCHC 3 cut(s) 259, 991, 1148
SgrDI CGTCGACG 1 cut(s) 67
SinI GGWCC 2 cut(s) 193, 604
SmaI CCCGGG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 353, 585
SmoI CTYRAG 2 cut(s) 353, 585
Sse9I AATT 5 cut(s) 88, 242, 362, 619, 789
SsiI CCGC 2 cut(s) 391, 656
SspMI CTAG 1 cut(s) 945
SstI GAGCTC 1 cut(s) 1148
StyD4I CCNGG 4 cut(s) 195, 560, 561, 690
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 263, 275, 452
TaiI ACGT 1 cut(s) 74
TaqI TCGA 9 cut(s) 41, 68, 74, 123, 143, 524, 1001, 1102, 1116
TasI AATT 5 cut(s) 88, 242, 362, 619, 789
TatI WGTACW 3 cut(s) 84, 447, 1159
TauI GCSGC 1 cut(s) 394
TfiI GAWTC 3 cut(s) 120, 319, 535
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 2 cut(s) 489, 692
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 3 cut(s) 358, 425, 851
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 4 cut(s) 220, 389, 569, 939
TspGWI ACGGA 1 cut(s) 54
TspMI CCCGGG 1 cut(s) 561
TspRI CASTG 2 cut(s) 489, 692
VpaK11BI GGWCC 2 cut(s) 193, 604
VspI ATTAAT 1 cut(s) 921
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 1166
XmaI CCCGGG 1 cut(s) 561
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 3 cut(s) 119, 534, 1068
XspI CTAG 1 cut(s) 945
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.