MD05G1362200.v1.1

WEB family protein At1g12150-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
47744881 .. 47747229
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1362200.v1.1.491

Sequence Viewer

Length: 1857 bp
ATGCATGCGTGTTGCCCGCAGAAGAAACCAAAAATGGCGAATGTCCGTATAAAGGATCAGCAGAAGGCTCCCGGTTCCCCGAGGGCGGAGGTGGGAGAGGTTGACACCCGAGCACCCTTCCAATCTGTCAAAGCTGCTGTTAGTTTGTTTGGCCAAGTCGTTTCTAGAGGAGGAAAATCTTCCAATGCCAATGCCAATTCCGATTCCAATTCCAGTGCCAGCCCCAAAGCCAATGCCAATGCCAATGCCGTCAAGAAAAAGCTTTCGCCGGAGACTAATGCACTGGACAAGGAGACGCAACTTCTGTTGGCACAGAAAGAACTAAACAAGATTAAGCAACAATTAGGGAGTGCGGAAACTACCAAAGCTAGAGCACTCTCTGAGCTTGATAAGGCCAAGAGAACACTGCAGGATCTGAACACCAAGCTCAAAACTGTAACAGACTCCAAGCGATCAGCAATTAAAGACGCCGAAGATGTGAAGAATCGGGCTAAGAAACTAGAAGAGGTCAAATCCAGAGAAACCATTGAAGGTAGTGCTTGGAAACGGGAATTGGACCACGAAAGAAATGAGTACACAGCCACTGTGACCGAACTCGATGCAGCAAAGCAAGAGCTTACCAAAATCCGACAGGACTTTGATGCCGCCTTTGAAGCAAAACTGGCTGCATTCCAACAGGCAGCAGAAGCTCAGCGGTCAGCAAACGTTAACTCAGACAGGGTTAACGAGCTGTCAAAGGAGGTTTCAGCCATGCAGGGATCCATTGAACAGCTCAAACTTGCCGCCCTGCAAGCCCAACAGGAGCAGGCAAACGCCGTGTGTGAAAAAGAGGCCCACCTTCGATCCTACCGAAGTGCGAAGCAAGAAGCAGAAGACAAATTGCTATCTTTGAAGAATGAGGTTGATCCTGAACTGGCCAAAGAACTAGAGGCAAAGCTTGAAGAAACAACATCGGAGATTGAAATTATACAAGAAGAGATGAAGAAAGCACACGCGTGCGAAATGGACTCCGTGAGAGTGGTGACTATGGAGCTCAATGAAGCCACAAAGATGCTGCAGGAAGTGGCGGACGAAGAGAGCTCTCTCCGAAGCTTTGTGAGTTCCCTCAGGCTGGAATTGGAAGATGTGAAGAGGGAACAGGCTGAATTGAAGGACAAAGAAATGGAAATGGAAGCTCTCGCTACTAAACTAACTGATCAAATACAGAAAACCAAAGAAGAGGCAGAGGCACATCGTAATGCACCTCCTAGTCCTCATGAATACGATGCACATCACAGCCCAACTGCTGAGAAGCTGTCATCTGAAACTGAAAGCACAAGGCTGGAAGCAGAAAAGATGAAGGAAAATGCTAATCAACATAAACGAGAAGCTGAAGATAGCAGAGTTGCAGCAGAGGAAGCAGAGATGAAACTGAAGATTGCCCTCGAAGAAGCTAAAGATGCACGAGAAGCAGAAAAAAGAGTCCTTGGGGAGCTGAAGTTCTTATCTGGGGGAACACAGGAAGAAGGTTCGTCTTCAAACTCAGAGACCGGTGCTGCCAAGATCAGACTATCGGAGGAGGAGTTTGAATCTTTGAGAAGGAAAGTCGAGGAATGTGAAAAATTGGCTGAGATGAAAGAGGCAGAAAGCATGAACCAAGTGGAAGCACTCAACGTAAGAAAAACTGAAGTAGATAAAAAGCTGGAGGCCAATTTAAAAGCCATAGAGGAAATCAAGACTGCAACAGACATGGCATTGAACAAAGCAGAGATGGCAGAGTCGGCAAAATCAGCAGTTGAGGGAGAACTTCGCAAGCGGCATCAAGAAGAACAAATGGTGGTGGGCGAGTCATCAGTATCATTCCCCGTTCAGTTCTAG

Protein Analysis

619

Amino Acids

68.79

Weight (kDa)

5.31

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 100 - 603 2e-31 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011447)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 995
AciI CCGC 8 cut(s) 17, 86, 353, 645, 694, 783, 1067, 1795
AclI AACGTT 1 cut(s) 705
AclWI GGATC 6 cut(s) 63, 420, 753, 766, 837, 899
AcoI YGGCCR 2 cut(s) 151, 915
AcuI CTGAAG 4 cut(s) 1392, 1433, 1496, 1686
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 3 cut(s) 52, 85, 1111
AflIII ACRYGT 1 cut(s) 993
AgeI ACCGGT 1 cut(s) 1529
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AleI CACNNNNGTG 1 cut(s) 994
AloI GAACNNNNNNTCC 2 cut(s) 1463, 1495
Alw21I GWGCWC 4 cut(s) 115, 376, 1035, 1082
Alw26I GTCTC 3 cut(s) 266, 287, 1520
AlwI GGATC 6 cut(s) 63, 420, 753, 766, 837, 899
AlwNI CAGNNNCTG 2 cut(s) 415, 584
Ama87I CYCGRG 2 cut(s) 79, 108
AoxI GGCC 5 cut(s) 151, 393, 831, 915, 1686
ApeKI GCWGC 7 cut(s) 134, 602, 665, 680, 1054, 1388, 1535
AsiGI ACCGGT 1 cut(s) 1529
Asp700I GAANNNNTTC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 556, 832
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 1033
AvaI CYCGRG 2 cut(s) 79, 108
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 1106
BalI TGGCCA 2 cut(s) 153, 917
BamHI GGATCC 1 cut(s) 758
BanII GRGCYC 2 cut(s) 1035, 1082
BauI CACGAG 1 cut(s) 1443
BbsI GAAGAC 2 cut(s) 879, 1506
Bbv12I GWGCWC 4 cut(s) 115, 376, 1035, 1082
BbvI GCAGC 7 cut(s) 121, 614, 652, 692, 1041, 1400, 1522
BccI CCATC 1 cut(s) 1744
BceAI ACGGC 2 cut(s) 233, 800
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BclI TGATCA 1 cut(s) 1195
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 266, 287, 1520
BfaI CTAG 6 cut(s) 165, 369, 500, 926, 1248, 1855
BfmI CTRYAG 2 cut(s) 407, 1055
BlpI GCTNAGC 1 cut(s) 690
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 79, 108
BmgT120I GGNCC 2 cut(s) 556, 832
BmiI GGNNCC 3 cut(s) 69, 76, 760
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 6 cut(s) 589, 631, 1041, 1255, 1429, 1807
BpiI GAAGAC 2 cut(s) 879, 1506
BpmI CTGGAG 1 cut(s) 1703
Bpu1102I GCTNAGC 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 1269
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 1520
BsaJI CCNNGG 2 cut(s) 80, 1465
BsaWI WCCGGW 1 cut(s) 1529
BsaXI ACNNNNNCTCC 4 cut(s) 1463, 1493, 1547, 1577
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 85, 1111
Bse118I RCCGGY 1 cut(s) 1529
Bse1I ACTGG 4 cut(s) 213, 288, 666, 918
Bse21I CCTNAGG 1 cut(s) 1106
Bse8I GATNNNNATC 1 cut(s) 1269
BseDI CCNNGG 2 cut(s) 80, 1465
BseJI GATNNNNATC 1 cut(s) 1269
BseLI CCNNNNNNNGG 3 cut(s) 52, 85, 1111
BseMII CTCAG 7 cut(s) 372, 704, 726, 1120, 1278, 1536, 1599
BseNI ACTGG 4 cut(s) 213, 288, 666, 918
BseRI GAGGAG 3 cut(s) 183, 1571, 1574
BseXI GCAGC 7 cut(s) 121, 614, 652, 692, 1041, 1400, 1522
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 5 cut(s) 153, 395, 833, 917, 1688
BshTI ACCGGT 1 cut(s) 1529
BsiHKAI GWGCWC 4 cut(s) 115, 376, 1035, 1082
BsiHKCI CYCGRG 2 cut(s) 79, 108
BsiSI CCGG 3 cut(s) 72, 269, 1530
BslI CCNNNNNNNGG 3 cut(s) 52, 85, 1111
BsmAI GTCTC 3 cut(s) 266, 287, 1520
BsmBI CGTCTC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 5 cut(s) 153, 395, 833, 917, 1688
Bso31I GGTCTC 1 cut(s) 1520
BsoBI CYCGRG 2 cut(s) 79, 108
Bsp1286I GDGCHC 4 cut(s) 115, 376, 1035, 1082
Bsp143I GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 8 cut(s) 17, 86, 353, 645, 694, 783, 1067, 1795
BspANI GGCC 5 cut(s) 153, 395, 833, 917, 1688
BspCNI CTCAG 7 cut(s) 373, 703, 725, 1119, 1279, 1535, 1600
BspFNI CGCG 1 cut(s) 995
BspHI TCATGA 1 cut(s) 1255
BspLI GGNNCC 3 cut(s) 69, 76, 760
BspMAI CTGCAG 2 cut(s) 411, 1059
BspPI GGATC 6 cut(s) 63, 420, 753, 766, 837, 899
BspTNI GGTCTC 1 cut(s) 1520
BsrFI RCCGGY 1 cut(s) 1529
BsrI ACTGG 4 cut(s) 213, 288, 666, 918
BssAI RCCGGY 1 cut(s) 1529
BssECI CCNNGG 2 cut(s) 80, 1465
BssMI GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
BssNI GRCGYC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 1 cut(s) 1465
Bst2BI CACGAG 1 cut(s) 1443
Bst4CI ACNGT 2 cut(s) 436, 586
Bst6I CTCTTC 5 cut(s) 498, 969, 1068, 1124, 1212
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 7 cut(s) 6, 17, 220, 792, 807, 997, 1793
BstDEI CTNAG 8 cut(s) 381, 492, 690, 712, 1106, 1287, 1522, 1608
BstFNI CGCG 1 cut(s) 995
BstKTI GATC 8 cut(s) 58, 415, 455, 761, 845, 907, 1198, 1545
BstMAI GTCTC 3 cut(s) 266, 287, 1520
BstMBI GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 407, 1055
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 7 cut(s) 121, 614, 652, 692, 1041, 1400, 1522
BstV2I GAAGAC 2 cut(s) 879, 1506
BstX2I RGATCY 2 cut(s) 412, 758
BstYI RGATCY 2 cut(s) 412, 758
Bsu36I CCTNAGG 1 cut(s) 1106
BsuRI GGCC 5 cut(s) 153, 395, 833, 917, 1688
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 4 cut(s) 220, 281, 404, 582
Cac8I GCNNGC 7 cut(s) 6, 17, 220, 792, 807, 997, 1793
CaiI CAGNNNCTG 2 cut(s) 415, 584
CciI TCATGA 1 cut(s) 1255
Cfr10I RCCGGY 1 cut(s) 1529
Cfr13I GGNCC 2 cut(s) 556, 832
CseI GACGC 2 cut(s) 304, 476
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 1529
CviAII CATG 5 cut(s) 5, 751, 1256, 1630, 1729
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 8 cut(s) 381, 492, 690, 712, 1106, 1287, 1522, 1608
DpnI GATC 8 cut(s) 57, 414, 454, 760, 844, 906, 1197, 1544
DpnII GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
DraI TTTAAA 1 cut(s) 1695
EaeI YGGCCR 2 cut(s) 151, 915
Eam1104I CTCTTC 5 cut(s) 498, 969, 1068, 1124, 1212
EarI CTCTTC 5 cut(s) 498, 969, 1068, 1124, 1212
EciI GGCGGA 2 cut(s) 101, 1082
Ecl136II GAGCTC 2 cut(s) 1033, 1080
Eco130I CCWWGG 1 cut(s) 1465
Eco24I GRGCYC 2 cut(s) 1035, 1082
Eco31I GGTCTC 1 cut(s) 1520
Eco47I GGWCC 1 cut(s) 556
Eco53kI GAGCTC 2 cut(s) 1033, 1080
Eco57I CTGAAG 4 cut(s) 1392, 1433, 1496, 1686
Eco81I CCTNAGG 1 cut(s) 1106
Eco88I CYCGRG 2 cut(s) 79, 108
EcoICRI GAGCTC 2 cut(s) 1033, 1080
EcoT14I CCWWGG 1 cut(s) 1465
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 1035, 1082
ErhI CCWWGG 1 cut(s) 1465
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 5 cut(s) 8, 754, 1259, 1633, 1732
FatI CATG 5 cut(s) 4, 750, 1255, 1629, 1728
FauI CCCGC 1 cut(s) 24
FbaI TGATCA 1 cut(s) 1195
FriOI GRGCYC 2 cut(s) 1035, 1082
FspBI CTAG 6 cut(s) 165, 369, 500, 926, 1248, 1855
GsuI CTGGAG 1 cut(s) 1703
HaeIII GGCC 5 cut(s) 153, 395, 833, 917, 1688
HapII CCGG 3 cut(s) 72, 269, 1530
HgaI GACGC 2 cut(s) 304, 476
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 5 cut(s) 8, 754, 1259, 1633, 1732
HincII GTYRAC 3 cut(s) 103, 709, 724
HindII GTYRAC 3 cut(s) 103, 709, 724
HindIII AAGCTT 3 cut(s) 260, 935, 1090
HinfI GANTC 8 cut(s) 203, 443, 484, 1007, 1461, 1568, 1757, 1826
HpaI GTTAAC 2 cut(s) 709, 724
HpaII CCGG 3 cut(s) 72, 269, 1530
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 4 cut(s) 103, 576, 709, 724
Hpy188III TCNNGA 7 cut(s) 165, 253, 516, 908, 1256, 1714, 1802
Hpy8I GTNNAC 4 cut(s) 103, 576, 709, 724
HpyAV CCTTC 8 cut(s) 58, 127, 524, 848, 1144, 1333, 1499, 1572
HpyCH4III ACNGT 2 cut(s) 436, 586
HpyCH4IV ACGT 2 cut(s) 705, 1653
HpyF3I CTNAG 8 cut(s) 381, 492, 690, 712, 1106, 1287, 1522, 1608
HpySE526I ACGT 2 cut(s) 705, 1653
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 5 cut(s) 8, 754, 1259, 1633, 1732
Ksp22I TGATCA 1 cut(s) 1195
KspAI GTTAAC 2 cut(s) 709, 724
Kzo9I GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
LmnI GCTCC 4 cut(s) 73, 802, 1030, 1471
Lsp1109I GCAGC 7 cut(s) 121, 614, 652, 692, 1041, 1400, 1522
LweI GCATC 6 cut(s) 589, 631, 1041, 1255, 1429, 1807
MaeI CTAG 6 cut(s) 165, 369, 500, 926, 1248, 1855
MaeII ACGT 2 cut(s) 705, 1653
MaeIII GTNAC 3 cut(s) 436, 586, 1021
MalI GATC 8 cut(s) 57, 414, 454, 760, 844, 906, 1197, 1544
MboI GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
MflI RGATCY 2 cut(s) 412, 758
MhlI GDGCHC 4 cut(s) 115, 376, 1035, 1082
MlsI TGGCCA 2 cut(s) 153, 917
MluI ACGCGT 1 cut(s) 993
MluNI TGGCCA 2 cut(s) 153, 917
MlyI GAGTC 5 cut(s) 437, 1001, 1470, 1766, 1835
MmeI TCCRAC 2 cut(s) 652, 697
Mox20I TGGCCA 2 cut(s) 153, 917
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 178
MscI TGGCCA 2 cut(s) 153, 917
MseI TTAA 5 cut(s) 333, 462, 708, 723, 1694
MslI CAYNNNNRTG 3 cut(s) 994, 1049, 1236
Msp20I TGGCCA 2 cut(s) 153, 917
MspA1I CMGCKG 1 cut(s) 694
MspI CCGG 3 cut(s) 72, 269, 1530
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 668
MvnI CGCG 1 cut(s) 995
NciI CCSGG 1 cut(s) 72
NdeII GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
NlaIII CATG 5 cut(s) 8, 754, 1259, 1633, 1732
NlaIV GGNNCC 3 cut(s) 69, 76, 760
NmuCI GTSAC 2 cut(s) 586, 1021
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 994
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 1 cut(s) 847
PctI GAATGC 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 203, 484, 1568
PinAI ACCGGT 1 cut(s) 1529
PleI GAGTC 5 cut(s) 437, 1001, 1469, 1765, 1834
PpsI GAGTC 5 cut(s) 437, 1001, 1469, 1765, 1834
Psp124BI GAGCTC 2 cut(s) 1035, 1082
Psp1406I AACGTT 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 69, 76, 760
PspPI GGNCC 2 cut(s) 556, 832
PstI CTGCAG 2 cut(s) 411, 1059
PstNI CAGNNNCTG 2 cut(s) 415, 584
PsuI RGATCY 2 cut(s) 412, 758
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 3 cut(s) 994, 1049, 1236
SacI GAGCTC 2 cut(s) 1035, 1082
SaqAI TTAA 5 cut(s) 333, 462, 708, 723, 1694
Sau3AI GATC 8 cut(s) 55, 412, 452, 758, 842, 904, 1195, 1542
Sau96I GGNCC 2 cut(s) 556, 832
SchI GAGTC 5 cut(s) 437, 1001, 1470, 1766, 1835
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 4 cut(s) 115, 376, 1035, 1082
SfaNI GCATC 6 cut(s) 589, 631, 1041, 1255, 1429, 1807
SfcI CTRYAG 2 cut(s) 407, 1055
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 3 cut(s) 994, 1049, 1236
SphI GCATGC 1 cut(s) 8
SsiI CCGC 8 cut(s) 17, 86, 353, 645, 694, 783, 1067, 1795
SspMI CTAG 6 cut(s) 165, 369, 500, 926, 1248, 1855
SstI GAGCTC 2 cut(s) 1035, 1082
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 1465
TaaI ACNGT 2 cut(s) 436, 586
TaiI ACGT 2 cut(s) 708, 1656
TaqI TCGA 4 cut(s) 597, 841, 1425, 1587
TaqII GACCGA 1 cut(s) 605
TatI WGTACW 1 cut(s) 573
TauI GCSGC 3 cut(s) 647, 785, 1798
TfiI GAWTC 3 cut(s) 203, 484, 1568
Tru1I TTAA 5 cut(s) 333, 462, 708, 723, 1694
Tru9I TTAA 5 cut(s) 333, 462, 708, 723, 1694
TscAI CASTG 4 cut(s) 220, 288, 411, 589
TseFI GTSAC 2 cut(s) 586, 1021
TseI GCWGC 7 cut(s) 134, 602, 665, 680, 1054, 1388, 1535
Tsp45I GTSAC 2 cut(s) 586, 1021
TspDTI ATGAA 7 cut(s) 995, 1053, 1272, 1352, 1421, 1628, 1646
TspGWI ACGGA 2 cut(s) 35, 1000
TspRI CASTG 4 cut(s) 220, 288, 411, 589
VpaK11BI GGWCC 1 cut(s) 556
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 6 cut(s) 165, 369, 500, 926, 1248, 1855
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.