Rh5CG003600

WEB family protein At1g12150-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
262736 .. 265501
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG003600.1

Sequence Viewer

Length: 1539 bp
ATGGAGACACAGCTTCTGTTGGCCCGGAAAGAACTCACCAAGGTTAAGCAACAACTAGAGAGTGCTGAAACCACAAAAGCTCGAGCACTCTCTGAACTTGACAAGGCTAAGAGAACACTAGAGGAACTAAATACCAAGATCAAAAGTGTAAGCGACTCCAAGAAATCAGCAATGAAAGCTGCCGAAGAAGTCAAGGCTCGAGCCAAGAATCTGGAAGAGGTGAAAGCCAGAGAATCAATTGAAGGTGCTGCTTGGAAACAAGAATTGGACCATGCAAGAAACGAGTACATAAGCACGGTCACCCAACTTGATGCTGCAAAGCAAGAGCTCACCAAAATCCGGCAGGACTTTGATGCCGCCTTGGAAGCAAAACTGGTTGCGTTCCAACAGGCAGGAGAAGCTCAACGTTCAGCAAAAGTAAACTCCGACAGGGTCACTGAGCTCCGAAAGGAAATTGCAGCCATGCAAGGATCCATTGAGCAGCTAAAAGTCGTCTCTATACATGCCCAACAAGAGCAGGCAAAGGTTGTGGCCGAAAGGGAGGCCCGCCTACAAGATTACAAAGCTGCTAAGCAACAAGCAGAAGACAAACTGCTATCTCTCAAGGAGGAAGTTGATCCTGAACTAATCAAAGATCTGGAGGCAAAGCTTGGACAAACAACAGTGGAAGTTGAGGTCTTACAGGAGGAAATGAGAAAAGCCCACGCCTCCGAAATGGACTCTGTGAGAGTTGTGACAATGGAGCTGAATGAAGCCACAAAGAAGCTGCAGGAAGTTGCTGAAGAAGAGAGCTCTCTTCGGAGCTTTGTGAGCTCCCTCAGGCTGGAATTGGAGGATGTGAAGATGGAAACCGGTGAACTCAGGAACAAGGAAATGGAACTGGAAGTTCTTGCTACTAGTCTGACTGCTGAAATGGAGAAAAACAAAGCTGAGGCTGAGCGGCTCAAGGAAGAGGCGGATCGTGCGGCAGTCCAGAAGCTGTCATCAGAAACCGAAAGCGCAAGACTGGAAGCCGAGAAGATGAAACAAAATGTTGTTCAGCAGAAGCGAGAAGCTGAAGATAGTCGAAATTCAGCGGAGGAAGCAGAGAAGAAACTGAAACTTGCACTGGAAGAAGCTGAAGATGCAATAGAAGCAGAGAAAAGAGCCCTGGAACAGCTGAAGGCCTTATCCGGGACACATCATGACACAGCAGCTTCAGAGAGCACTACTCCTAGTACAACTGGGAAGATCAAATTATCATTGGAGGACTATGAGTGTTTGAGTAGGAAAGCGAAGGAATGTGAAAGCTTGGCTGAGATAAGAGAGGCAGAGTGCATTGTCCAAGTAGAAGCGATCAGTGTGAGAAAGAATGAAGCAGATAAAAGGTTGGAGGCCTCCTTAAAAGCAATAGAGGAAATCAAGACTGCAACAAACTTGGCACTGAGAAACGCAGAGTCGGCAGATTCAGCAAAATCGGTGGTTGAGGGTGAACTTCGCAAGTGGCGTCAAGAAGAACAAACGGTGGTGGTAGGCGAGTCATCACGGCCACCCTTCTAG

Protein Analysis

512

Amino Acids

57.37

Weight (kDa)

5.13

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 2 - 500 7.3e-36 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011447)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 940
AciI CCGC 6 cut(s) 357, 547, 940, 956, 965, 1076
AclI AACGTT 1 cut(s) 406
AclWI GGATC 4 cut(s) 465, 478, 611, 966
AcoI YGGCCR 2 cut(s) 531, 1526
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 5 cut(s) 801, 1077, 1140, 1181, 1182
AcyI GRCGYC 1 cut(s) 1486
AfaI GTAC 2 cut(s) 287, 1219
AfiI CCNNNNNNNGG 3 cut(s) 339, 823, 1173
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 896
AjnI CCWGG 1 cut(s) 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
Alw21I GWGCWC 6 cut(s) 88, 330, 444, 794, 815, 1208
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 4 cut(s) 465, 478, 611, 966
AlwNI CAGNNNCTG 2 cut(s) 16, 979
Ama87I CYCGRG 2 cut(s) 81, 198
AoxI GGCC 6 cut(s) 21, 531, 543, 1164, 1374, 1526
ApeKI GCWGC 8 cut(s) 179, 248, 314, 458, 481, 566, 766, 1193
ApoI RAATTY 1 cut(s) 1069
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 1 cut(s) 1001
AspS9I GGNCC 3 cut(s) 22, 268, 544
AsuC2I CCSGG 2 cut(s) 25, 1174
AsuHPI GGTGA 6 cut(s) 28, 232, 292, 322, 866, 1481
AvaI CYCGRG 2 cut(s) 81, 198
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 818
BamHI GGATCC 1 cut(s) 470
BanII GRGCYC 5 cut(s) 330, 444, 794, 815, 1150
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 6 cut(s) 88, 330, 444, 794, 815, 1208
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 8 cut(s) 166, 235, 301, 470, 493, 553, 753, 1205
BccI CCATC 1 cut(s) 838
BciT130I CCWGG 1 cut(s) 1151
BcnI CCSGG 2 cut(s) 25, 1174
BcoDI GTCTC 1 cut(s) 499
BcuI ACTAGT 1 cut(s) 896
BfaI CTAG 5 cut(s) 56, 119, 897, 1215, 1537
BfmI CTRYAG 1 cut(s) 767
BglII AGATCT 1 cut(s) 634
BlpI GCTNAGC 2 cut(s) 570, 936
Bme1390I CCNGG 3 cut(s) 25, 1151, 1174
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 81, 198
BmgT120I GGNCC 3 cut(s) 22, 268, 544
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 3 cut(s) 25, 1151, 1174
BmrI ACTGGG 1 cut(s) 1233
BmsI GCATC 3 cut(s) 301, 343, 1114
BmuI ACTGGG 1 cut(s) 1233
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 1195, 1227
BpmI CTGGAG 1 cut(s) 659
Bpu10I CCTNAGC 1 cut(s) 930
Bpu1102I GCTNAGC 2 cut(s) 570, 936
BpuEI CTTGAG 2 cut(s) 587, 929
BpuMI CCSGG 2 cut(s) 25, 1174
BsaHI GRCGYC 1 cut(s) 1486
BsaJI CCNNGG 3 cut(s) 39, 360, 1149
BsaWI WCCGGW 1 cut(s) 851
Bsc4I CCNNNNNNNGG 3 cut(s) 339, 823, 1173
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 5 cut(s) 378, 885, 1011, 1113, 1228
Bse21I CCTNAGG 1 cut(s) 818
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 1151
BseDI CCNNGG 3 cut(s) 39, 360, 1149
BseGI GGATG 1 cut(s) 841
BseLI CCNNNNNNNGG 3 cut(s) 339, 823, 1173
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 7 cut(s) 429, 832, 874, 921, 927, 1287, 1415
BseNI ACTGG 5 cut(s) 378, 885, 1011, 1113, 1228
BseXI GCAGC 8 cut(s) 166, 235, 301, 470, 493, 553, 753, 1205
BshFI GGCC 6 cut(s) 23, 533, 545, 1166, 1376, 1528
BshTI ACCGGT 1 cut(s) 851
BsiHKAI GWGCWC 6 cut(s) 88, 330, 444, 794, 815, 1208
BsiHKCI CYCGRG 2 cut(s) 81, 198
BsiSI CCGG 4 cut(s) 25, 340, 852, 1173
BslFI GGGAC 1 cut(s) 1189
BslI CCNNNNNNNGG 3 cut(s) 339, 823, 1173
BsmAI GTCTC 1 cut(s) 499
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 1189
BsnI GGCC 6 cut(s) 23, 533, 545, 1166, 1376, 1528
BsoBI CYCGRG 2 cut(s) 81, 198
Bsp1286I GDGCHC 7 cut(s) 88, 330, 444, 794, 815, 1150, 1208
Bsp143I GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
Bsp1720I GCTNAGC 2 cut(s) 570, 936
BspACI CCGC 6 cut(s) 357, 547, 940, 956, 965, 1076
BspANI GGCC 6 cut(s) 23, 533, 545, 1166, 1376, 1528
BspCNI CTCAG 7 cut(s) 430, 831, 873, 922, 928, 1288, 1416
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 771
BspPI GGATC 4 cut(s) 465, 478, 611, 966
BsrBI CCGCTC 1 cut(s) 940
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 5 cut(s) 378, 885, 1011, 1113, 1228
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 3 cut(s) 39, 360, 1149
BssMI GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
BssNI GRCGYC 1 cut(s) 1486
BssT1I CCWWGG 2 cut(s) 39, 360
Bst2UI CCWGG 1 cut(s) 1151
Bst4CI ACNGT 3 cut(s) 298, 664, 1504
Bst6I CTCTTC 4 cut(s) 210, 780, 801, 945
BstACI GRCGYC 1 cut(s) 1486
BstC8I GCNNGC 2 cut(s) 519, 547
BstDEI CTNAG 9 cut(s) 108, 438, 570, 818, 860, 930, 936, 1296, 1424
BstEII GGTNACC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 841
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 7 cut(s) 141, 473, 619, 637, 961, 1233, 1338
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
BstNI CCWGG 1 cut(s) 1151
BstNSI RCATGY 1 cut(s) 506
BstPI GGTNACC 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 23, 1149, 1172
BstSFI CTRYAG 1 cut(s) 767
BstV1I GCAGC 8 cut(s) 166, 235, 301, 470, 493, 553, 753, 1205
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 470, 634
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 2 cut(s) 470, 634
Bsu36I CCTNAGG 1 cut(s) 818
BsuRI GGCC 6 cut(s) 23, 533, 545, 1166, 1376, 1528
BtsCI GGATG 1 cut(s) 841
BtsIMutI CAGTG 5 cut(s) 435, 669, 1106, 1345, 1421
Cac8I GCNNGC 2 cut(s) 519, 547
CaiI CAGNNNCTG 2 cut(s) 16, 979
CciI TCATGA 1 cut(s) 1183
CfoI GCGC 1 cut(s) 1001
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 3 cut(s) 22, 268, 544
CseI GACGC 1 cut(s) 1475
Csp6I GTAC 2 cut(s) 286, 1218
CspAI ACCGGT 1 cut(s) 851
CspCI CAANNNNNGTGG 4 cut(s) 510, 545, 1440, 1475
CviAII CATG 4 cut(s) 272, 463, 503, 1184
CviQI GTAC 2 cut(s) 286, 1218
DdeI CTNAG 9 cut(s) 108, 438, 570, 818, 860, 930, 936, 1296, 1424
DpnI GATC 7 cut(s) 140, 472, 618, 636, 960, 1232, 1337
DpnII GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
EaeI YGGCCR 2 cut(s) 531, 1526
Eam1104I CTCTTC 4 cut(s) 210, 780, 801, 945
EarI CTCTTC 4 cut(s) 210, 780, 801, 945
EciI GGCGGA 1 cut(s) 971
Ecl136II GAGCTC 4 cut(s) 328, 442, 792, 813
Eco130I CCWWGG 2 cut(s) 39, 360
Eco147I AGGCCT 2 cut(s) 1166, 1376
Eco24I GRGCYC 5 cut(s) 330, 444, 794, 815, 1150
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 4 cut(s) 328, 442, 792, 813
Eco57I CTGAAG 5 cut(s) 801, 1077, 1140, 1181, 1182
Eco81I CCTNAGG 1 cut(s) 818
Eco88I CYCGRG 2 cut(s) 81, 198
Eco91I GGTNACC 1 cut(s) 298
EcoICRI GAGCTC 4 cut(s) 328, 442, 792, 813
EcoO65I GGTNACC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 1149
EcoT14I CCWWGG 2 cut(s) 39, 360
EcoT38I GRGCYC 5 cut(s) 330, 444, 794, 815, 1150
ErhI CCWWGG 2 cut(s) 39, 360
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 4 cut(s) 275, 466, 506, 1187
FaiI YATR 7 cut(s) 273, 290, 464, 500, 504, 1185, 1254
FaqI GGGAC 1 cut(s) 1189
FatI CATG 4 cut(s) 271, 462, 502, 1183
FauI CCCGC 1 cut(s) 554
FokI GGATG 1 cut(s) 848
FriOI GRGCYC 5 cut(s) 330, 444, 794, 815, 1150
FspBI CTAG 5 cut(s) 56, 119, 897, 1215, 1537
GlaI GCGC 1 cut(s) 1000
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 6 cut(s) 23, 533, 545, 1166, 1376, 1528
HapII CCGG 4 cut(s) 25, 340, 852, 1173
HgaI GACGC 1 cut(s) 1475
HhaI GCGC 1 cut(s) 1001
Hin1I GRCGYC 1 cut(s) 1486
Hin1II CATG 4 cut(s) 275, 466, 506, 1187
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HindIII AAGCTT 2 cut(s) 647, 1288
HinfI GANTC 7 cut(s) 155, 208, 233, 719, 1436, 1445, 1517
HpaII CCGG 4 cut(s) 25, 340, 852, 1173
HphI GGTGA 6 cut(s) 28, 232, 292, 322, 866, 1481
Hpy166II GTNNAC 3 cut(s) 421, 857, 1472
Hpy188I TCNGA 8 cut(s) 94, 427, 446, 712, 801, 903, 988, 1201
Hpy188III TCNNGA 8 cut(s) 212, 620, 638, 862, 973, 1184, 1402, 1490
Hpy8I GTNNAC 3 cut(s) 421, 857, 1472
HpyAV CCTTC 3 cut(s) 236, 1156, 1270
HpyCH4III ACNGT 3 cut(s) 298, 664, 1504
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 9 cut(s) 275, 317, 458, 466, 769, 1106, 1127, 1317, 1409
HpyF3I CTNAG 9 cut(s) 108, 438, 570, 818, 860, 930, 936, 1296, 1424
HpySE526I ACGT 1 cut(s) 406
Hsp92I GRCGYC 1 cut(s) 1486
Hsp92II CATG 4 cut(s) 275, 466, 506, 1187
HspAI GCGC 1 cut(s) 999
Kzo9I GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
LmnI GCTCC 4 cut(s) 447, 742, 801, 818
Lsp1109I GCAGC 8 cut(s) 166, 235, 301, 470, 493, 553, 753, 1205
LweI GCATC 3 cut(s) 301, 343, 1114
MaeI CTAG 5 cut(s) 56, 119, 897, 1215, 1537
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 3 cut(s) 298, 433, 733
MalI GATC 7 cut(s) 140, 472, 618, 636, 960, 1232, 1337
MbiI CCGCTC 1 cut(s) 940
MboI GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 2 cut(s) 470, 634
MhlI GDGCHC 7 cut(s) 88, 330, 444, 794, 815, 1150, 1208
MluCI AATT 6 cut(s) 237, 263, 453, 827, 1069, 1235
MlyI GAGTC 4 cut(s) 149, 713, 1445, 1526
MmeI TCCRAC 3 cut(s) 409, 450, 1350
MseI TTAA 2 cut(s) 45, 1382
MspA1I CMGCKG 2 cut(s) 1076, 1159
MspI CCGG 4 cut(s) 25, 340, 852, 1173
MspR9I CCNGG 3 cut(s) 25, 1151, 1174
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 1151
NciI CCSGG 2 cut(s) 25, 1174
NdeII GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
NlaIII CATG 4 cut(s) 275, 466, 506, 1187
NlaIV GGNNCC 1 cut(s) 472
NmeAIII GCCGAG 1 cut(s) 1039
NmuCI GTSAC 3 cut(s) 298, 433, 733
NspI RCATGY 1 cut(s) 506
PaeR7I CTCGAG 2 cut(s) 81, 198
PagI TCATGA 1 cut(s) 1183
PceI AGGCCT 2 cut(s) 1166, 1376
PcsI WCGNNNNNNNCGW 1 cut(s) 1483
PfeI GAWTC 3 cut(s) 208, 233, 1445
PflFI GACNNNGTC 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 1172
PinAI ACCGGT 1 cut(s) 851
PleI GAGTC 4 cut(s) 149, 713, 1444, 1525
PpsI GAGTC 4 cut(s) 149, 713, 1444, 1525
Psp124BI GAGCTC 4 cut(s) 330, 444, 794, 815
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 1149
PspEI GGTNACC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 1149
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 3 cut(s) 22, 268, 544
PspXI VCTCGAGB 2 cut(s) 81, 198
PstI CTGCAG 1 cut(s) 771
PstNI CAGNNNCTG 2 cut(s) 16, 979
PsuI RGATCY 2 cut(s) 470, 634
PsyI GACNNNGTC 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 1159
RsaI GTAC 2 cut(s) 287, 1219
RsaNI GTAC 2 cut(s) 286, 1218
SacI GAGCTC 4 cut(s) 330, 444, 794, 815
SaqAI TTAA 2 cut(s) 45, 1382
Sau3AI GATC 7 cut(s) 138, 470, 616, 634, 958, 1230, 1335
Sau96I GGNCC 3 cut(s) 22, 268, 544
SchI GAGTC 4 cut(s) 149, 713, 1445, 1526
ScrFI CCNGG 3 cut(s) 25, 1151, 1174
SduI GDGCHC 7 cut(s) 88, 330, 444, 794, 815, 1150, 1208
SfaNI GCATC 3 cut(s) 301, 343, 1114
SfcI CTRYAG 1 cut(s) 767
Sfr274I CTCGAG 2 cut(s) 81, 198
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 2 cut(s) 81, 198
SmlI CTYRAG 4 cut(s) 81, 198, 602, 944
SmoI CTYRAG 4 cut(s) 81, 198, 602, 944
SpeI ACTAGT 1 cut(s) 896
Sse9I AATT 6 cut(s) 237, 263, 453, 827, 1069, 1235
SseBI AGGCCT 2 cut(s) 1166, 1376
SsiI CCGC 6 cut(s) 357, 547, 940, 956, 965, 1076
SspMI CTAG 5 cut(s) 56, 119, 897, 1215, 1537
SstI GAGCTC 4 cut(s) 330, 444, 794, 815
StuI AGGCCT 2 cut(s) 1166, 1376
StyD4I CCNGG 3 cut(s) 23, 1149, 1172
StyI CCWWGG 2 cut(s) 39, 360
TaaI ACNGT 3 cut(s) 298, 664, 1504
TaiI ACGT 1 cut(s) 409
TaqI TCGA 3 cut(s) 82, 199, 1066
TasI AATT 6 cut(s) 237, 263, 453, 827, 1069, 1235
TatI WGTACW 2 cut(s) 285, 1217
TauI GCSGC 3 cut(s) 359, 943, 968
TfiI GAWTC 3 cut(s) 208, 233, 1445
Tru1I TTAA 2 cut(s) 45, 1382
Tru9I TTAA 2 cut(s) 45, 1382
TscAI CASTG 5 cut(s) 442, 669, 1113, 1345, 1428
TseFI GTSAC 3 cut(s) 298, 433, 733
TseI GCWGC 8 cut(s) 179, 248, 314, 458, 481, 566, 766, 1193
Tsp45I GTSAC 3 cut(s) 298, 433, 733
TspDTI ATGAA 4 cut(s) 188, 765, 1037, 1368
TspRI CASTG 5 cut(s) 442, 669, 1113, 1345, 1428
Tth111I GACNNNGTC 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 1069
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 2 cut(s) 81, 198
XspI CTAG 5 cut(s) 56, 119, 897, 1215, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.