Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243975.1

Orthogroup ID

OG0011447

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 741

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243975.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

cggagctttgtgagctccctcaggctggaatcggaggatgtgaagagggaaaccggtgaactcaggaacaaggaaatggaactggaagctcttgctactagtctgactgctgaaatggagaaaaacaaagccgaggctgagcggctcaaggaagaggcggatcgtgcggcagtccagaagctgtcatcagaaaccgaaagcgcaagactggaagccgagaagatgaaacaaaatgttgttcagcagaagcgagaagctgaagatagtcgaaattcagcggaggaagcagagaagaaactgaaacttgcactggaagaagctgaagatgcaatagaagcagagaaaagagccctggaacaactgaaggccttatccgggacacatcatgacacagcagcttcagagagcactactcctagtacaactgggaagatcaaattatcattggaggactatgagtgtttgagtaggaaagcgaaggaatgtgaaagcttggctgagataagagaggcagagtgcattgtccaagtagaagcgatcagtgtgagaaagaatgaagcagataaaaggttggaggcctccttaaaagcgatagaggaaatcaagactgcaacaaacttggcactgagaaacgcagagtcggcagattcagcaaaatcggtggttgagggtgaacttcgcaagtggcgtcaagaagaacaaacggtggtggtaggcgagtcatcacggccacccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

246

Amino Acids

27.46

Weight (kDa)

5.0

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12150 AT1G12150
fragaria_vesca	FvH4_3g00281 FvH4_3g00281
malus_domestica	MD05G1362200.v1.1 MD10G1339700.v1.1
prunus_persica	Prupe.4G003200_v2.0.a1
pyrus_communis	pycom05g32850 pycom05g32860 pycom10g28950
rosa_chinensis	RchiOBHm_Chr5g0000421
rosa_laevigata	RLG00000030865
rosa_multiflora	Rmu_co8243975.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075740
rosa_rugosa	Rorug04G0383500
rosa_samantha	Rh5AG003400 Rh5BG004500 Rh5CG003600 Rh5DG003500
rosa_wichuraiana	Rw5G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	4 cut(s)	142, 158, 167, 278
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	728
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	4 cut(s)	279, 342, 383, 384
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	25, 375
AgeI	ACCGGT	1 cut(s)	53
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	8 cut(s)	6, 15, 89, 181, 257, 320, 398, 492
AluI	AGCT	8 cut(s)	6, 15, 89, 181, 257, 320, 398, 492
Alw21I	GWGCWC	2 cut(s)	17, 410
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	3 cut(s)	366, 576, 728
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	68, 683
AxyI	CCTNAGG	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	17, 352
Bbv12I	GWGCWC	2 cut(s)	17, 410
BbvI	GCAGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	3 cut(s)	99, 417, 739
BisI	GCNGC	3 cut(s)	143, 168, 396
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	3 cut(s)	144, 169, 397
Bme1390I	CCNGG	2 cut(s)	353, 376
BmrFI	CCNGG	2 cut(s)	353, 376
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	132, 351
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 375
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	87, 213, 315, 430
Bse21I	CCTNAGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	132, 351
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	25, 375
BseMII	CTCAG	5 cut(s)	34, 76, 129, 489, 617
BseNI	ACTGG	4 cut(s)	87, 213, 315, 430
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	368, 578, 730
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	17, 410
BsiSI	CCGG	2 cut(s)	54, 375
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	25, 375
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	368, 578, 730
Bsp1286I	GDGCHC	3 cut(s)	17, 352, 410
Bsp143I	GATC	3 cut(s)	160, 432, 537
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	142, 158, 167, 278
BspANI	GGCC	3 cut(s)	368, 578, 730
BspCNI	CTCAG	5 cut(s)	33, 75, 130, 490, 618
BspHI	TCATGA	1 cut(s)	385
BspPI	GGATC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	87, 213, 315, 430
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	132, 351
BssMI	GATC	3 cut(s)	160, 432, 537
BssNI	GRCGYC	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	2 cut(s)	38, 147
BstACI	GRCGYC	1 cut(s)	688
BstDEI	CTNAG	5 cut(s)	20, 62, 138, 498, 626
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	163, 435, 540
BstMBI	GATC	3 cut(s)	160, 432, 537
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 164, 284, 326, 335, 641, 650
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	351, 374
BstV1I	GCAGC	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	368, 578, 730
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	308, 547, 623
CaiI	CAGNNNCTG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	53
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	1 cut(s)	420
CspAI	ACCGGT	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	5 cut(s)	20, 62, 138, 498, 626
DpnI	GATC	3 cut(s)	162, 434, 539
DpnII	GATC	3 cut(s)	160, 432, 537
EaeI	YGGCCR	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	38, 147
EarI	CTCTTC	2 cut(s)	38, 147
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	15
Eco147I	AGGCCT	2 cut(s)	368, 578
Eco24I	GRGCYC	2 cut(s)	17, 352
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	4 cut(s)	279, 342, 383, 384
Eco81I	CCTNAGG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	17, 352
FaeI	CATG	1 cut(s)	389
FaiI	YATR	2 cut(s)	387, 456
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	143, 168, 396
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	2 cut(s)	17, 352
Fsp4HI	GCNGC	3 cut(s)	143, 168, 396
FspBI	CTAG	3 cut(s)	99, 417, 739
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	143, 168, 396
HaeIII	GGCC	3 cut(s)	368, 578, 730
HapII	CCGG	2 cut(s)	54, 375
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	4 cut(s)	29, 638, 647, 719
HpaII	CCGG	2 cut(s)	54, 375
HphI	GGTGA	2 cut(s)	68, 683
Hpy166II	GTNNAC	2 cut(s)	59, 674
Hpy188I	TCNGA	4 cut(s)	34, 105, 190, 403
Hpy188III	TCNNGA	5 cut(s)	64, 175, 386, 604, 692
Hpy8I	GTNNAC	2 cut(s)	59, 674
HpyAV	CCTTC	2 cut(s)	358, 472
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	4 cut(s)	308, 329, 519, 611
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 164, 284, 326, 335, 641, 650
HpyF3I	CTNAG	5 cut(s)	20, 62, 138, 498, 626
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	160, 432, 537
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	99, 417, 739
MalI	GATC	3 cut(s)	162, 434, 539
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	3 cut(s)	160, 432, 537
MboII	GAAGA	9 cut(s)	55, 164, 232, 272, 304, 326, 335, 442, 707
MhlI	GDGCHC	3 cut(s)	17, 352, 410
MluCI	AATT	2 cut(s)	271, 437
MlyI	GAGTC	2 cut(s)	647, 728
MmeI	TCCRAC	1 cut(s)	552
MseI	TTAA	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	54, 375
MspR9I	CCNGG	2 cut(s)	353, 376
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	7 cut(s)	12, 164, 284, 326, 335, 641, 650
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	160, 432, 537
NlaIII	CATG	1 cut(s)	389
NmeAIII	GCCGAG	2 cut(s)	157, 241
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	2 cut(s)	368, 578
PcsI	WCGNNNNNNNCGW	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	29, 647
PfoI	TCCNGGA	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	144, 169, 397
PleI	GAGTC	2 cut(s)	646, 727
PpsI	GAGTC	2 cut(s)	646, 727
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	3 cut(s)	143, 168, 396
Sau3AI	GATC	3 cut(s)	160, 432, 537
SchI	GAGTC	2 cut(s)	647, 728
ScrFI	CCNGG	2 cut(s)	353, 376
SduI	GDGCHC	3 cut(s)	17, 352, 410
SetI	ASST	9 cut(s)	8, 17, 91, 183, 259, 322, 400, 494, 572
SfaNI	GCATC	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	2 cut(s)	271, 437
SseBI	AGGCCT	2 cut(s)	368, 578
SsiI	CCGC	4 cut(s)	142, 158, 167, 278
SspMI	CTAG	3 cut(s)	99, 417, 739
SstI	GAGCTC	1 cut(s)	17
StuI	AGGCCT	2 cut(s)	368, 578
StyD4I	CCNGG	2 cut(s)	351, 374
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	271, 437
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	2 cut(s)	145, 170
TfiI	GAWTC	2 cut(s)	29, 647
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	3 cut(s)	315, 547, 630
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	239, 570
TspRI	CASTG	3 cut(s)	315, 547, 630
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	3 cut(s)	99, 417, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.