single fertilization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20970 |
| fragaria_vesca | FvH4_5g26490 FvH4_5g26490 |
| malus_domestica | MD06G1001600.v1.1 |
| prunus_persica | Prupe.5G002400_v2.0.a1 Prupe.5G002400_v2.0.a1 |
| pyrus_communis | pycom06g00170 pycom16g26270 pycom16g26280 |
| rosa_chinensis | RchiOBHm_Chr7g0217401 |
| rosa_laevigata | RLG00000002480 |
| rosa_roxburghii | Rroxscaffold_3G00242210 |
| rosa_rugosa | Rorug07G0168900 |
| rosa_samantha | Rh7AG308500 Rh7BG299200 Rh7CG327800 Rh7DG307800 |
| rosa_wichuraiana | Rw7G026160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2628 |
| AccB1I | GGYRCC | 2 cut(s) | 394, 3796 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 484, 1595 |
| AccBSI | CCGCTC | 1 cut(s) | 3066 |
| AccI | GTMKAC | 1 cut(s) | 3574 |
| AccIII | TCCGGA | 1 cut(s) | 3147 |
| AciI | CCGC | 9 cut(s) | 309, 2165, 2241, 3066, 3414, 3629, 3674, 3925, 3965 |
| AclI | AACGTT | 1 cut(s) | 3088 |
| AcoI | YGGCCR | 3 cut(s) | 6, 568, 3513 |
| AcsI | RAATTY | 8 cut(s) | 1435, 1675, 1933, 2244, 2380, 2498, 2888, 3807 |
| AcuI | CTGAAG | 7 cut(s) | 582, 753, 1467, 2061, 2538, 2735, 3762 |
| AfaI | GTAC | 3 cut(s) | 2053, 3026, 3181 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 301, 433, 469, 484, 1384, 1595, 2545, 3207, 3328 |
| AflIII | ACRYGT | 1 cut(s) | 2413 |
| AgeI | ACCGGT | 1 cut(s) | 3838 |
| AjiI | CACGTC | 1 cut(s) | 901 |
| AjnI | CCWGG | 3 cut(s) | 612, 2178, 2745 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1074, 1106 |
| AleI | CACNNNNGTG | 1 cut(s) | 2147 |
| Alw21I | GWGCWC | 7 cut(s) | 24, 1282, 1470, 1746, 2807, 3664, 3978 |
| Alw26I | GTCTC | 7 cut(s) | 352, 356, 1499, 2529, 2657, 3447, 3864 |
| Alw44I | GTGCAC | 2 cut(s) | 20, 1278 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 365, 3440 |
| Aor13HI | TCCGGA | 1 cut(s) | 3147 |
| ApaI | GGGCCC | 1 cut(s) | 1098 |
| ApaLI | GTGCAC | 2 cut(s) | 20, 1278 |
| ApeKI | GCWGC | 9 cut(s) | 305, 2507, 2528, 2939, 3044, 3568, 3650, 3943, 4011 |
| ApoI | RAATTY | 8 cut(s) | 1435, 1675, 1933, 2244, 2380, 2498, 2888, 3807 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2656, 2688 |
| AseI | ATTAAT | 1 cut(s) | 2579 |
| AsiGI | ACCGGT | 1 cut(s) | 3838 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2847 |
| AspLEI | GCGC | 5 cut(s) | 890, 1375, 2235, 2556, 3213 |
| AspS9I | GGNCC | 5 cut(s) | 1004, 1094, 1095, 3221, 3637 |
| AsuC2I | CCSGG | 2 cut(s) | 172, 2438 |
| AsuHPI | GGTGA | 3 cut(s) | 500, 806, 3853 |
| AsuNHI | GCTAGC | 2 cut(s) | 1997, 2032 |
| AvaII | GGWCC | 2 cut(s) | 1004, 3221 |
| AxyI | CCTNAGG | 2 cut(s) | 3324, 3813 |
| BaeGI | GKGCMC | 4 cut(s) | 24, 399, 1098, 1282 |
| BalI | TGGCCA | 2 cut(s) | 570, 3515 |
| BamHI | GGATCC | 1 cut(s) | 373 |
| BanI | GGYRCC | 2 cut(s) | 394, 3796 |
| BanII | GRGCYC | 4 cut(s) | 1098, 1189, 2807, 3237 |
| BauI | CACGAG | 1 cut(s) | 2532 |
| Bbv12I | GWGCWC | 7 cut(s) | 24, 1282, 1470, 1746, 2807, 3664, 3978 |
| BbvCI | CCTCAGC | 2 cut(s) | 2263, 2322 |
| BbvI | GCAGC | 9 cut(s) | 292, 2494, 2515, 2926, 3031, 3580, 3637, 3955, 4023 |
| BccI | CCATC | 7 cut(s) | 560, 671, 1164, 1865, 3200, 3379, 3721 |
| BceAI | ACGGC | 5 cut(s) | 21, 166, 535, 664, 2323 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2678, 2712 |
| BciT130I | CCWGG | 3 cut(s) | 614, 2180, 2747 |
| BciVI | GTATCC | 1 cut(s) | 1381 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcnI | CCSGG | 2 cut(s) | 172, 2438 |
| BcoDI | GTCTC | 7 cut(s) | 352, 356, 1499, 2529, 2657, 3447, 3864 |
| BfaI | CTAG | 8 cut(s) | 422, 704, 1190, 1998, 2033, 2742, 3555, 3828 |
| BfmI | CTRYAG | 3 cut(s) | 513, 2940, 3960 |
| BfoI | RGCGCY | 1 cut(s) | 3214 |
| BfuI | GTATCC | 1 cut(s) | 1381 |
| BglII | AGATCT | 1 cut(s) | 2513 |
| BlpI | GCTNAGC | 1 cut(s) | 2010 |
| Bme1390I | CCNGG | 5 cut(s) | 172, 614, 2180, 2438, 2747 |
| Bme18I | GGWCC | 2 cut(s) | 1004, 3221 |
| BmgBI | CACGTC | 1 cut(s) | 901 |
| BmgT120I | GGNCC | 5 cut(s) | 1004, 1094, 1095, 3221, 3637 |
| BmiI | GGNNCC | 9 cut(s) | 375, 396, 1005, 1006, 1096, 1245, 3234, 3798, 3819 |
| BmrFI | CCNGG | 5 cut(s) | 172, 614, 2180, 2438, 2747 |
| BmtI | GCTAGC | 2 cut(s) | 2001, 2036 |
| BoxI | GACNNNNGTC | 2 cut(s) | 903, 2952 |
| BpmI | CTGGAG | 2 cut(s) | 596, 3599 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2263, 2322, 3597 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2010 |
| BpuEI | CTTGAG | 4 cut(s) | 621, 1564, 2856, 3181 |
| BpuMI | CCSGG | 2 cut(s) | 172, 2438 |
| BsaBI | GATNNNNATC | 2 cut(s) | 372, 1482 |
| BsaI | GGTCTC | 4 cut(s) | 352, 2529, 2657, 3864 |
| BsaJI | CCNNGG | 4 cut(s) | 501, 2746, 3891, 3947 |
| BsaWI | WCCGGW | 2 cut(s) | 3147, 3838 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 301, 433, 469, 484, 1384, 1595, 2545, 3207, 3328 |
| Bse118I | RCCGGY | 2 cut(s) | 8, 3838 |
| Bse1I | ACTGG | 3 cut(s) | 1562, 2242, 3582 |
| Bse21I | CCTNAGG | 2 cut(s) | 3324, 3813 |
| Bse3DI | GCAATG | 1 cut(s) | 4009 |
| Bse8I | GATNNNNATC | 2 cut(s) | 372, 1482 |
| BseAI | TCCGGA | 1 cut(s) | 3147 |
| BseBI | CCWGG | 3 cut(s) | 614, 2180, 2747 |
| BseDI | CCNNGG | 4 cut(s) | 501, 2746, 3891, 3947 |
| BseJI | GATNNNNATC | 2 cut(s) | 372, 1482 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 301, 433, 469, 484, 1384, 1595, 2545, 3207, 3328 |
| BseMI | GCAATG | 1 cut(s) | 4009 |
| BseNI | ACTGG | 3 cut(s) | 1562, 2242, 3582 |
| BseRI | GAGGAG | 4 cut(s) | 3245, 3341, 3596, 3692 |
| BseSI | GKGCMC | 4 cut(s) | 24, 399, 1098, 1282 |
| BseX3I | CGGCCG | 1 cut(s) | 6 |
| BseXI | GCAGC | 9 cut(s) | 292, 2494, 2515, 2926, 3031, 3580, 3637, 3955, 4023 |
| BseYI | CCCAGC | 1 cut(s) | 3997 |
| BsgI | GTGCAG | 1 cut(s) | 2514 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshNI | GGYRCC | 2 cut(s) | 394, 3796 |
| BshTI | ACCGGT | 1 cut(s) | 3838 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 7 cut(s) | 24, 1282, 1470, 1746, 2807, 3664, 3978 |
| BsiSI | CCGG | 5 cut(s) | 9, 171, 2437, 3148, 3839 |
| BslFI | GGGAC | 3 cut(s) | 935, 1017, 3467 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 301, 433, 469, 484, 1384, 1595, 2545, 3207, 3328 |
| BsmAI | GTCTC | 7 cut(s) | 352, 356, 1499, 2529, 2657, 3447, 3864 |
| BsmFI | GGGAC | 3 cut(s) | 935, 1017, 3467 |
| BsmI | GAATGC | 3 cut(s) | 694, 973, 2605 |
| Bso31I | GGTCTC | 4 cut(s) | 352, 2529, 2657, 3864 |
| Bsp120I | GGGCCC | 1 cut(s) | 1094 |
| Bsp13I | TCCGGA | 1 cut(s) | 3147 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2010 |
| BspACI | CCGC | 9 cut(s) | 309, 2165, 2241, 3066, 3414, 3629, 3674, 3925, 3965 |
| BspEI | TCCGGA | 1 cut(s) | 3147 |
| BspHI | TCATGA | 1 cut(s) | 541 |
| BspLI | GGNNCC | 9 cut(s) | 375, 396, 1005, 1006, 1096, 1245, 3234, 3798, 3819 |
| BspMAI | CTGCAG | 2 cut(s) | 517, 2944 |
| BspOI | GCTAGC | 2 cut(s) | 2001, 2036 |
| BspT107I | GGYRCC | 2 cut(s) | 394, 3796 |
| BspTNI | GGTCTC | 4 cut(s) | 352, 2529, 2657, 3864 |
| BsrBI | CCGCTC | 1 cut(s) | 3066 |
| BsrDI | GCAATG | 1 cut(s) | 4009 |
| BsrFI | RCCGGY | 2 cut(s) | 8, 3838 |
| BsrI | ACTGG | 3 cut(s) | 1562, 2242, 3582 |
| BssAI | RCCGGY | 2 cut(s) | 8, 3838 |
| BssECI | CCNNGG | 4 cut(s) | 501, 2746, 3891, 3947 |
| BssSI | CACGAG | 1 cut(s) | 2532 |
| BssT1I | CCWWGG | 3 cut(s) | 501, 3891, 3947 |
| Bst2BI | CACGAG | 1 cut(s) | 2532 |
| Bst2UI | CCWGG | 3 cut(s) | 614, 2180, 2747 |
| Bst4CI | ACNGT | 9 cut(s) | 122, 221, 589, 811, 1026, 2651, 3115, 3286, 3847 |
| Bst6I | CTCTTC | 8 cut(s) | 729, 932, 2385, 2514, 2743, 3459, 3695, 3921 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1874 |
| BstC8I | GCNNGC | 8 cut(s) | 10, 524, 528, 630, 683, 1957, 1999, 2034 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 299, 1382, 2543 |
| BstH2I | RGCGCY | 1 cut(s) | 3214 |
| BstHHI | GCGC | 5 cut(s) | 890, 1375, 2235, 2556, 3213 |
| BstMAI | GTCTC | 7 cut(s) | 352, 356, 1499, 2529, 2657, 3447, 3864 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstNI | CCWGG | 3 cut(s) | 614, 2180, 2747 |
| BstNSI | RCATGY | 1 cut(s) | 2417 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 903, 2952 |
| BstSCI | CCNGG | 5 cut(s) | 170, 612, 2178, 2436, 2745 |
| BstSFI | CTRYAG | 3 cut(s) | 513, 2940, 3960 |
| BstSLI | GKGCMC | 4 cut(s) | 24, 399, 1098, 1282 |
| BstV1I | GCAGC | 9 cut(s) | 292, 2494, 2515, 2926, 3031, 3580, 3637, 3955, 4023 |
| BstX2I | RGATCY | 7 cut(s) | 373, 418, 554, 1885, 2252, 2513, 2830 |
| BstYI | RGATCY | 7 cut(s) | 373, 418, 554, 1885, 2252, 2513, 2830 |
| BstZI | CGGCCG | 1 cut(s) | 6 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3324, 3813 |
| BsuI | GTATCC | 1 cut(s) | 1381 |
| BtgZI | GCGATG | 1 cut(s) | 3855 |
| BtrI | CACGTC | 1 cut(s) | 901 |
| BtsI | GCAGTG | 2 cut(s) | 250, 2286 |
| BtsIMutI | CAGTG | 6 cut(s) | 144, 250, 2235, 2286, 3059, 3291 |
| Cac8I | GCNNGC | 8 cut(s) | 10, 524, 528, 630, 683, 1957, 1999, 2034 |
| CaiI | CAGNNNCTG | 2 cut(s) | 365, 3440 |
| CciI | TCATGA | 1 cut(s) | 541 |
| CfoI | GCGC | 5 cut(s) | 890, 1375, 2235, 2556, 3213 |
| Cfr10I | RCCGGY | 2 cut(s) | 8, 3838 |
| Cfr13I | GGNCC | 5 cut(s) | 1004, 1094, 1095, 3221, 3637 |
| CseI | GACGC | 1 cut(s) | 2025 |
| Csp6I | GTAC | 3 cut(s) | 2052, 3025, 3180 |
| CspAI | ACCGGT | 1 cut(s) | 3838 |
| CviAII | CATG | 9 cut(s) | 440, 536, 542, 695, 1901, 2414, 2660, 2792, 3904 |
| CviQI | GTAC | 3 cut(s) | 2052, 3025, 3180 |
| DraI | TTTAAA | 2 cut(s) | 2385, 4024 |
| EaeI | YGGCCR | 3 cut(s) | 6, 568, 3513 |
| EagI | CGGCCG | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 8 cut(s) | 729, 932, 2385, 2514, 2743, 3459, 3695, 3921 |
| EarI | CTCTTC | 8 cut(s) | 729, 932, 2385, 2514, 2743, 3459, 3695, 3921 |
| EciI | GGCGGA | 1 cut(s) | 2256 |
| Ecl136II | GAGCTC | 1 cut(s) | 2805 |
| EclXI | CGGCCG | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 3 cut(s) | 501, 3891, 3947 |
| Eco24I | GRGCYC | 4 cut(s) | 1098, 1189, 2807, 3237 |
| Eco31I | GGTCTC | 4 cut(s) | 352, 2529, 2657, 3864 |
| Eco32I | GATATC | 2 cut(s) | 1791, 3253 |
| Eco47I | GGWCC | 2 cut(s) | 1004, 3221 |
| Eco52I | CGGCCG | 1 cut(s) | 6 |
| Eco53kI | GAGCTC | 1 cut(s) | 2805 |
| Eco57I | CTGAAG | 7 cut(s) | 582, 753, 1467, 2061, 2538, 2735, 3762 |
| Eco81I | CCTNAGG | 2 cut(s) | 3324, 3813 |
| EcoICRI | GAGCTC | 1 cut(s) | 2805 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 299, 1382, 2543 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1004 |
| EcoRI | GAATTC | 1 cut(s) | 2244 |
| EcoRII | CCWGG | 3 cut(s) | 612, 2178, 2745 |
| EcoRV | GATATC | 2 cut(s) | 1791, 3253 |
| EcoT14I | CCWWGG | 3 cut(s) | 501, 3891, 3947 |
| EcoT38I | GRGCYC | 4 cut(s) | 1098, 1189, 2807, 3237 |
| ErhI | CCWWGG | 3 cut(s) | 501, 3891, 3947 |
| FaeI | CATG | 9 cut(s) | 443, 539, 545, 698, 1904, 2417, 2663, 2795, 3907 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2461, 2493 |
| FaqI | GGGAC | 3 cut(s) | 935, 1017, 3467 |
| FatI | CATG | 9 cut(s) | 439, 535, 541, 694, 1900, 2413, 2659, 2791, 3903 |
| FauNDI | CATATG | 1 cut(s) | 2965 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 1 cut(s) | 3574 |
| FriOI | GRGCYC | 4 cut(s) | 1098, 1189, 2807, 3237 |
| FspBI | CTAG | 8 cut(s) | 422, 704, 1190, 1998, 2033, 2742, 3555, 3828 |
| GlaI | GCGC | 5 cut(s) | 889, 1374, 2234, 2555, 3212 |
| GsaI | CCCAGC | 1 cut(s) | 4001 |
| GsuI | CTGGAG | 2 cut(s) | 596, 3599 |
| HaeII | RGCGCY | 1 cut(s) | 3214 |
| HapII | CCGG | 5 cut(s) | 9, 171, 2437, 3148, 3839 |
| HgaI | GACGC | 1 cut(s) | 2025 |
| HhaI | GCGC | 5 cut(s) | 890, 1375, 2235, 2556, 3213 |
| Hin1II | CATG | 9 cut(s) | 443, 539, 545, 698, 1904, 2417, 2663, 2795, 3907 |
| Hin6I | GCGC | 5 cut(s) | 888, 1373, 2233, 2554, 3211 |
| HinP1I | GCGC | 5 cut(s) | 888, 1373, 2233, 2554, 3211 |
| HincII | GTYRAC | 4 cut(s) | 646, 930, 2095, 3879 |
| HindII | GTYRAC | 4 cut(s) | 646, 930, 2095, 3879 |
| HindIII | AAGCTT | 2 cut(s) | 799, 2772 |
| HpaI | GTTAAC | 1 cut(s) | 930 |
| HpaII | CCGG | 5 cut(s) | 9, 171, 2437, 3148, 3839 |
| HphI | GGTGA | 3 cut(s) | 500, 806, 3853 |
| Hpy166II | GTNNAC | 8 cut(s) | 22, 646, 930, 1280, 2095, 2729, 3575, 3879 |
| Hpy8I | GTNNAC | 8 cut(s) | 22, 646, 930, 1280, 2095, 2729, 3575, 3879 |
| Hpy99I | CGWCG | 2 cut(s) | 392, 625 |
| HpyCH4III | ACNGT | 9 cut(s) | 122, 221, 589, 811, 1026, 2651, 3115, 3286, 3847 |
| HpyCH4IV | ACGT | 2 cut(s) | 900, 3088 |
| HpySE526I | ACGT | 2 cut(s) | 900, 3088 |
| Hsp92II | CATG | 9 cut(s) | 443, 539, 545, 698, 1904, 2417, 2663, 2795, 3907 |
| HspAI | GCGC | 5 cut(s) | 888, 1373, 2233, 2554, 3211 |
| KflI | GGGWCCC | 1 cut(s) | 1004 |
| Kpn2I | TCCGGA | 1 cut(s) | 3147 |
| KroI | GCCGGC | 1 cut(s) | 8 |
| KroNI | GCCGGC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| KspAI | GTTAAC | 1 cut(s) | 930 |
| LmnI | GCTCC | 6 cut(s) | 356, 2230, 2656, 3232, 3817, 4019 |
| Lsp1109I | GCAGC | 9 cut(s) | 292, 2494, 2515, 2926, 3031, 3580, 3637, 3955, 4023 |
| MaeI | CTAG | 8 cut(s) | 422, 704, 1190, 1998, 2033, 2742, 3555, 3828 |
| MaeII | ACGT | 2 cut(s) | 900, 3088 |
| MaeIII | GTNAC | 7 cut(s) | 166, 706, 2409, 2866, 3167, 3841, 3847 |
| MbiI | CCGCTC | 1 cut(s) | 3066 |
| MfeI | CAATTG | 1 cut(s) | 3969 |
| MflI | RGATCY | 7 cut(s) | 373, 418, 554, 1885, 2252, 2513, 2830 |
| MlsI | TGGCCA | 2 cut(s) | 570, 3515 |
| MluNI | TGGCCA | 2 cut(s) | 570, 3515 |
| MlyI | GAGTC | 6 cut(s) | 215, 710, 913, 974, 1564, 2117 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| Mox20I | TGGCCA | 2 cut(s) | 570, 3515 |
| MroI | TCCGGA | 1 cut(s) | 3147 |
| MroNI | GCCGGC | 1 cut(s) | 8 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2847 |
| MscI | TGGCCA | 2 cut(s) | 570, 3515 |
| MslI | CAYNNNNRTG | 4 cut(s) | 27, 327, 540, 2147 |
| Msp20I | TGGCCA | 2 cut(s) | 570, 3515 |
| MspA1I | CMGCKG | 1 cut(s) | 3629 |
| MspI | CCGG | 5 cut(s) | 9, 171, 2437, 3148, 3839 |
| MspR9I | CCNGG | 5 cut(s) | 172, 614, 2180, 2438, 2747 |
| MunI | CAATTG | 1 cut(s) | 3969 |
| Mva1269I | GAATGC | 3 cut(s) | 694, 973, 2605 |
| MvaI | CCWGG | 3 cut(s) | 614, 2180, 2747 |
| NaeI | GCCGGC | 1 cut(s) | 10 |
| NciI | CCSGG | 2 cut(s) | 172, 2438 |
| NdeI | CATATG | 1 cut(s) | 2965 |
| NgoMIV | GCCGGC | 1 cut(s) | 8 |
| NheI | GCTAGC | 2 cut(s) | 1997, 2032 |
| NlaIII | CATG | 9 cut(s) | 443, 539, 545, 698, 1904, 2417, 2663, 2795, 3907 |
| NlaIV | GGNNCC | 9 cut(s) | 375, 396, 1005, 1006, 1096, 1245, 3234, 3798, 3819 |
| NmuCI | GTSAC | 3 cut(s) | 166, 2866, 3841 |
| NspI | RCATGY | 1 cut(s) | 2417 |
| OliI | CACNNNNGTG | 1 cut(s) | 2147 |
| PagI | TCATGA | 1 cut(s) | 541 |
| PciI | ACATGT | 1 cut(s) | 2413 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 396 |
| PctI | GAATGC | 3 cut(s) | 694, 973, 2605 |
| PdiI | GCCGGC | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2847 |
| PflFI | GACNNNGTC | 1 cut(s) | 200 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 484, 1595 |
| PfoI | TCCNGGA | 1 cut(s) | 612 |
| PinAI | ACCGGT | 1 cut(s) | 3838 |
| PleI | GAGTC | 6 cut(s) | 214, 710, 912, 974, 1563, 2117 |
| PpsI | GAGTC | 6 cut(s) | 214, 710, 912, 974, 1563, 2117 |
| PpuMI | RGGWCCY | 1 cut(s) | 1004 |
| PscI | ACATGT | 1 cut(s) | 2413 |
| PshAI | GACNNNNGTC | 2 cut(s) | 903, 2952 |
| PshBI | ATTAAT | 1 cut(s) | 2579 |
| PsiI | TTATAA | 1 cut(s) | 2628 |
| Psp124BI | GAGCTC | 1 cut(s) | 2807 |
| Psp1406I | AACGTT | 1 cut(s) | 3088 |
| Psp5II | RGGWCCY | 1 cut(s) | 1004 |
| Psp6I | CCWGG | 3 cut(s) | 612, 2178, 2745 |
| PspFI | CCCAGC | 1 cut(s) | 3997 |
| PspGI | CCWGG | 3 cut(s) | 612, 2178, 2745 |
| PspN4I | GGNNCC | 9 cut(s) | 375, 396, 1005, 1006, 1096, 1245, 3234, 3798, 3819 |
| PspOMI | GGGCCC | 1 cut(s) | 1094 |
| PspPI | GGNCC | 5 cut(s) | 1004, 1094, 1095, 3221, 3637 |
| PspPPI | RGGWCCY | 1 cut(s) | 1004 |
| PstI | CTGCAG | 2 cut(s) | 517, 2944 |
| PstNI | CAGNNNCTG | 2 cut(s) | 365, 3440 |
| PsuI | RGATCY | 7 cut(s) | 373, 418, 554, 1885, 2252, 2513, 2830 |
| PsyI | GACNNNGTC | 1 cut(s) | 200 |
| RsaI | GTAC | 3 cut(s) | 2053, 3026, 3181 |
| RsaNI | GTAC | 3 cut(s) | 2052, 3025, 3180 |
| RseI | CAYNNNNRTG | 4 cut(s) | 27, 327, 540, 2147 |
| SacI | GAGCTC | 1 cut(s) | 2807 |
| Sau96I | GGNCC | 5 cut(s) | 1004, 1094, 1095, 3221, 3637 |
| SchI | GAGTC | 6 cut(s) | 215, 710, 913, 974, 1564, 2117 |
| ScrFI | CCNGG | 5 cut(s) | 172, 614, 2180, 2438, 2747 |
| SfcI | CTRYAG | 3 cut(s) | 513, 2940, 3960 |
| SinI | GGWCC | 2 cut(s) | 1004, 3221 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 27, 327, 540, 2147 |
| SmlI | CTYRAG | 4 cut(s) | 636, 1579, 2871, 3160 |
| SmoI | CTYRAG | 4 cut(s) | 636, 1579, 2871, 3160 |
| SsiI | CCGC | 9 cut(s) | 309, 2165, 2241, 3066, 3414, 3629, 3674, 3925, 3965 |
| SspMI | CTAG | 8 cut(s) | 422, 704, 1190, 1998, 2033, 2742, 3555, 3828 |
| SstI | GAGCTC | 1 cut(s) | 2807 |
| StyD4I | CCNGG | 5 cut(s) | 170, 612, 2178, 2436, 2745 |
| StyI | CCWWGG | 3 cut(s) | 501, 3891, 3947 |
| TaaI | ACNGT | 9 cut(s) | 122, 221, 589, 811, 1026, 2651, 3115, 3286, 3847 |
| TaiI | ACGT | 2 cut(s) | 903, 3091 |
| TaqI | TCGA | 5 cut(s) | 204, 413, 1197, 2493, 2698 |
| TatI | WGTACW | 2 cut(s) | 2051, 3179 |
| TauI | GCSGC | 3 cut(s) | 311, 2167, 3968 |
| TscAI | CASTG | 6 cut(s) | 151, 250, 2242, 2293, 3066, 3291 |
| TseFI | GTSAC | 3 cut(s) | 166, 2866, 3841 |
| TseI | GCWGC | 9 cut(s) | 305, 2507, 2528, 2939, 3044, 3568, 3650, 3943, 4011 |
| Tsp45I | GTSAC | 3 cut(s) | 166, 2866, 3841 |
| TspGWI | ACGGA | 2 cut(s) | 369, 884 |
| TspRI | CASTG | 6 cut(s) | 151, 250, 2242, 2293, 3066, 3291 |
| Tth111I | GACNNNGTC | 1 cut(s) | 200 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 484, 1595 |
| VneI | GTGCAC | 2 cut(s) | 20, 1278 |
| VpaK11BI | GGWCC | 2 cut(s) | 1004, 3221 |
| VspI | ATTAAT | 1 cut(s) | 2579 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 299, 1382, 2543 |
| XapI | RAATTY | 8 cut(s) | 1435, 1675, 1933, 2244, 2380, 2498, 2888, 3807 |
| XceI | RCATGY | 1 cut(s) | 2417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3274 |
| XmiI | GTMKAC | 1 cut(s) | 3574 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2847 |
| XspI | CTAG | 8 cut(s) | 422, 704, 1190, 1998, 2033, 2742, 3555, 3828 |