single fertilization
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20970 |
| fragaria_vesca | FvH4_5g26490 FvH4_5g26490 |
| malus_domestica | MD06G1001600.v1.1 |
| prunus_persica | Prupe.5G002400_v2.0.a1 Prupe.5G002400_v2.0.a1 |
| pyrus_communis | pycom06g00170 pycom16g26270 pycom16g26280 |
| rosa_chinensis | RchiOBHm_Chr7g0217401 |
| rosa_laevigata | RLG00000002480 |
| rosa_roxburghii | Rroxscaffold_3G00242210 |
| rosa_rugosa | Rorug07G0168900 |
| rosa_samantha | Rh7AG308500 Rh7BG299200 Rh7CG327800 Rh7DG307800 |
| rosa_wichuraiana | Rw7G026160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 894 |
| AccB7I | CCANNNNNTGG | 9 cut(s) | 718, 805, 853, 901, 988, 1075, 1162, 1249, 1336 |
| AciI | CCGC | 6 cut(s) | 8, 150, 153, 210, 216, 1947 |
| AclWI | GGATC | 7 cut(s) | 326, 461, 562, 567, 1507, 3168, 3186 |
| AcoI | YGGCCR | 9 cut(s) | 568, 709, 796, 844, 979, 1066, 1153, 1240, 1327 |
| AcsI | RAATTY | 3 cut(s) | 1942, 1975, 2846 |
| AcuI | CTGAAG | 9 cut(s) | 338, 624, 1428, 1509, 1674, 2499, 2886, 3083, 3185 |
| AcyI | GRCGYC | 1 cut(s) | 891 |
| AfaI | GTAC | 3 cut(s) | 538, 1698, 3318 |
| AflII | CTTAAG | 1 cut(s) | 3094 |
| AgeI | ACCGGT | 1 cut(s) | 2296 |
| AjnI | CCWGG | 1 cut(s) | 2145 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 390, 422 |
| Alw21I | GWGCWC | 2 cut(s) | 1290, 2838 |
| Alw26I | GTCTC | 3 cut(s) | 592, 1817, 3005 |
| AlwI | GGATC | 7 cut(s) | 326, 461, 562, 567, 1507, 3168, 3186 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 341, 1826, 2330, 2438, 2477, 2624 |
| ApoI | RAATTY | 3 cut(s) | 1942, 1975, 2846 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3004, 3036 |
| AseI | ATTAAT | 6 cut(s) | 774, 957, 1044, 1218, 1305, 2538 |
| AsiGI | ACCGGT | 1 cut(s) | 2296 |
| AspLEI | GCGC | 2 cut(s) | 527, 3208 |
| AspS9I | GGNCC | 3 cut(s) | 388, 1574, 2820 |
| AsuC2I | CCSGG | 1 cut(s) | 2786 |
| AsuHPI | GGTGA | 5 cut(s) | 139, 341, 830, 2407, 2554 |
| AvaII | GGWCC | 1 cut(s) | 388 |
| AxyI | CCTNAGG | 1 cut(s) | 1779 |
| BaeGI | GKGCMC | 2 cut(s) | 1918, 2487 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1734, 1767 |
| BalI | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| BanII | GRGCYC | 6 cut(s) | 638, 759, 1029, 1116, 1203, 2172 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3300, 3332 |
| BauI | CACGAG | 1 cut(s) | 1878 |
| Bbv12I | GWGCWC | 2 cut(s) | 1290, 2838 |
| BbvCI | CCTCAGC | 3 cut(s) | 309, 529, 765 |
| BccI | CCATC | 5 cut(s) | 122, 1127, 2237, 2459, 2606 |
| BceAI | ACGGC | 8 cut(s) | 21, 811, 859, 2102, 2119, 2297, 2431, 3057 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1013, 1047, 1100, 1134, 1187, 1221, 3026, 3060 |
| BciT130I | CCWGG | 1 cut(s) | 2147 |
| BclI | TGATCA | 1 cut(s) | 3076 |
| BcnI | CCSGG | 1 cut(s) | 2786 |
| BcoDI | GTCTC | 3 cut(s) | 592, 1817, 3005 |
| BfaI | CTAG | 4 cut(s) | 2039, 2061, 2304, 2712 |
| BfmI | CTRYAG | 3 cut(s) | 393, 3288, 3323 |
| BfoI | RGCGCY | 1 cut(s) | 528 |
| BfrI | CTTAAG | 1 cut(s) | 3094 |
| BglII | AGATCT | 1 cut(s) | 2199 |
| Bme1390I | CCNGG | 2 cut(s) | 2147, 2786 |
| Bme18I | GGWCC | 1 cut(s) | 388 |
| BmgT120I | GGNCC | 3 cut(s) | 388, 1574, 2820 |
| BmiI | GGNNCC | 2 cut(s) | 133, 390 |
| BmrFI | CCNGG | 2 cut(s) | 2147, 2786 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1991, 2023 |
| Bpu10I | CCTNAGC | 5 cut(s) | 309, 529, 765, 2431, 2578 |
| BpuEI | CTTGAG | 5 cut(s) | 2014, 2190, 2246, 2876, 3204 |
| BpuMI | CCSGG | 1 cut(s) | 2786 |
| BsaBI | GATNNNNATC | 2 cut(s) | 21, 1467 |
| BsaHI | GRCGYC | 1 cut(s) | 891 |
| BsaI | GGTCTC | 1 cut(s) | 3005 |
| BsaJI | CCNNGG | 6 cut(s) | 51, 114, 381, 576, 648, 3000 |
| BsaWI | WCCGGW | 2 cut(s) | 326, 2296 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 390, 420 |
| Bse118I | RCCGGY | 4 cut(s) | 2296, 2422, 2524, 2569 |
| Bse1I | ACTGG | 1 cut(s) | 1562 |
| Bse21I | CCTNAGG | 1 cut(s) | 1779 |
| Bse3DI | GCAATG | 2 cut(s) | 608, 1203 |
| Bse8I | GATNNNNATC | 2 cut(s) | 21, 1467 |
| BseBI | CCWGG | 1 cut(s) | 2147 |
| BseDI | CCNNGG | 6 cut(s) | 51, 114, 381, 576, 648, 3000 |
| BseGI | GGATG | 5 cut(s) | 425, 1171, 2794, 2953, 3112 |
| BseJI | GATNNNNATC | 2 cut(s) | 21, 1467 |
| BseMI | GCAATG | 2 cut(s) | 608, 1203 |
| BseNI | ACTGG | 1 cut(s) | 1562 |
| BseRI | GAGGAG | 8 cut(s) | 245, 248, 251, 254, 326, 377, 398, 782 |
| BseSI | GKGCMC | 2 cut(s) | 1918, 2487 |
| BsgI | GTGCAG | 1 cut(s) | 327 |
| BshTI | ACCGGT | 1 cut(s) | 2296 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1290, 2838 |
| BsiSI | CCGG | 6 cut(s) | 327, 2297, 2423, 2525, 2570, 2785 |
| BslFI | GGGAC | 1 cut(s) | 374 |
| BsmAI | GTCTC | 3 cut(s) | 592, 1817, 3005 |
| BsmFI | GGGAC | 1 cut(s) | 374 |
| BsmI | GAATGC | 1 cut(s) | 3362 |
| Bso31I | GGTCTC | 1 cut(s) | 3005 |
| Bsp1407I | TGTACA | 1 cut(s) | 3316 |
| Bsp19I | CCATGG | 1 cut(s) | 3000 |
| BspACI | CCGC | 6 cut(s) | 8, 150, 153, 210, 216, 1947 |
| BspHI | TCATGA | 4 cut(s) | 619, 1435, 2044, 3007 |
| BspLI | GGNNCC | 2 cut(s) | 133, 390 |
| BspMAI | CTGCAG | 1 cut(s) | 3292 |
| BspPI | GGATC | 7 cut(s) | 326, 461, 562, 567, 1507, 3168, 3186 |
| BspTI | CTTAAG | 1 cut(s) | 3094 |
| BspTNI | GGTCTC | 1 cut(s) | 3005 |
| BsrDI | GCAATG | 2 cut(s) | 608, 1203 |
| BsrFI | RCCGGY | 4 cut(s) | 2296, 2422, 2524, 2569 |
| BsrGI | TGTACA | 1 cut(s) | 3316 |
| BsrI | ACTGG | 1 cut(s) | 1562 |
| BssAI | RCCGGY | 4 cut(s) | 2296, 2422, 2524, 2569 |
| BssECI | CCNNGG | 6 cut(s) | 51, 114, 381, 576, 648, 3000 |
| BssNI | GRCGYC | 1 cut(s) | 891 |
| BssSI | CACGAG | 1 cut(s) | 1878 |
| BssT1I | CCWWGG | 4 cut(s) | 51, 114, 648, 3000 |
| Bst2BI | CACGAG | 1 cut(s) | 1878 |
| Bst2UI | CCWGG | 1 cut(s) | 2147 |
| Bst4CI | ACNGT | 4 cut(s) | 1613, 1729, 2419, 2638 |
| Bst6I | CTCTTC | 3 cut(s) | 1434, 1650, 2862 |
| BstACI | GRCGYC | 1 cut(s) | 891 |
| BstAFI | CTTAAG | 1 cut(s) | 3094 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1730 |
| BstAUI | TGTACA | 1 cut(s) | 3316 |
| BstC8I | GCNNGC | 8 cut(s) | 500, 504, 2424, 2428, 2526, 2571, 2575, 2751 |
| BstDSI | CCRYGG | 2 cut(s) | 576, 3000 |
| BstF5I | GGATG | 5 cut(s) | 425, 1171, 2794, 2953, 3112 |
| BstH2I | RGCGCY | 1 cut(s) | 528 |
| BstHHI | GCGC | 2 cut(s) | 527, 3208 |
| BstMAI | GTCTC | 3 cut(s) | 592, 1817, 3005 |
| BstNI | CCWGG | 1 cut(s) | 2147 |
| BstNSI | RCATGY | 2 cut(s) | 2321, 2753 |
| BstSCI | CCNGG | 2 cut(s) | 2145, 2784 |
| BstSFI | CTRYAG | 3 cut(s) | 393, 3288, 3323 |
| BstSLI | GKGCMC | 2 cut(s) | 1918, 2487 |
| BstX2I | RGATCY | 3 cut(s) | 554, 2199, 3160 |
| BstYI | RGATCY | 3 cut(s) | 554, 2199, 3160 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1779 |
| BtgI | CCRYGG | 2 cut(s) | 576, 3000 |
| BtgZI | GCGATG | 1 cut(s) | 141 |
| BtsCI | GGATG | 5 cut(s) | 425, 1171, 2794, 2953, 3112 |
| BtsIMutI | CAGTG | 6 cut(s) | 91, 469, 1576, 2496, 2604, 2634 |
| Cac8I | GCNNGC | 8 cut(s) | 500, 504, 2424, 2428, 2526, 2571, 2575, 2751 |
| CaiI | CAGNNNCTG | 6 cut(s) | 341, 1826, 2330, 2438, 2477, 2624 |
| CciI | TCATGA | 4 cut(s) | 619, 1435, 2044, 3007 |
| CfoI | GCGC | 2 cut(s) | 527, 3208 |
| Cfr10I | RCCGGY | 4 cut(s) | 2296, 2422, 2524, 2569 |
| Cfr13I | GGNCC | 3 cut(s) | 388, 1574, 2820 |
| CseI | GACGC | 2 cut(s) | 2057, 2075 |
| Csp6I | GTAC | 3 cut(s) | 537, 1697, 3317 |
| CspAI | ACCGGT | 1 cut(s) | 2296 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviQI | GTAC | 3 cut(s) | 537, 1697, 3317 |
| EaeI | YGGCCR | 9 cut(s) | 568, 709, 796, 844, 979, 1066, 1153, 1240, 1327 |
| Eam1104I | CTCTTC | 3 cut(s) | 1434, 1650, 2862 |
| EarI | CTCTTC | 3 cut(s) | 1434, 1650, 2862 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 4 cut(s) | 51, 114, 648, 3000 |
| Eco147I | AGGCCT | 1 cut(s) | 2686 |
| Eco24I | GRGCYC | 6 cut(s) | 638, 759, 1029, 1116, 1203, 2172 |
| Eco31I | GGTCTC | 1 cut(s) | 3005 |
| Eco32I | GATATC | 1 cut(s) | 1267 |
| Eco47I | GGWCC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 9 cut(s) | 338, 624, 1428, 1509, 1674, 2499, 2886, 3083, 3185 |
| Eco81I | CCTNAGG | 1 cut(s) | 1779 |
| EcoO109I | RGGNCCY | 1 cut(s) | 388 |
| EcoRII | CCWGG | 1 cut(s) | 2145 |
| EcoRV | GATATC | 1 cut(s) | 1267 |
| EcoT14I | CCWWGG | 4 cut(s) | 51, 114, 648, 3000 |
| EcoT22I | ATGCAT | 1 cut(s) | 610 |
| EcoT38I | GRGCYC | 6 cut(s) | 638, 759, 1029, 1116, 1203, 2172 |
| ErhI | CCWWGG | 4 cut(s) | 51, 114, 648, 3000 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3180, 3212 |
| FaqI | GGGAC | 1 cut(s) | 374 |
| FauNDI | CATATG | 2 cut(s) | 2988, 3313 |
| FbaI | TGATCA | 1 cut(s) | 3076 |
| FokI | GGATG | 5 cut(s) | 412, 1178, 2801, 2960, 3119 |
| FriOI | GRGCYC | 6 cut(s) | 638, 759, 1029, 1116, 1203, 2172 |
| FspBI | CTAG | 4 cut(s) | 2039, 2061, 2304, 2712 |
| GlaI | GCGC | 2 cut(s) | 526, 3207 |
| HaeII | RGCGCY | 1 cut(s) | 528 |
| HapII | CCGG | 6 cut(s) | 327, 2297, 2423, 2525, 2570, 2785 |
| HgaI | GACGC | 2 cut(s) | 2057, 2075 |
| HhaI | GCGC | 2 cut(s) | 527, 3208 |
| Hin1I | GRCGYC | 1 cut(s) | 891 |
| Hin6I | GCGC | 2 cut(s) | 525, 3206 |
| HinP1I | GCGC | 2 cut(s) | 525, 3206 |
| HincII | GTYRAC | 3 cut(s) | 318, 423, 2229 |
| HindII | GTYRAC | 3 cut(s) | 318, 423, 2229 |
| HindIII | AAGCTT | 1 cut(s) | 1717 |
| HpaII | CCGG | 6 cut(s) | 327, 2297, 2423, 2525, 2570, 2785 |
| HphI | GGTGA | 5 cut(s) | 139, 341, 830, 2407, 2554 |
| Hpy166II | GTNNAC | 5 cut(s) | 318, 423, 788, 1883, 2229 |
| Hpy8I | GTNNAC | 5 cut(s) | 318, 423, 788, 1883, 2229 |
| Hpy99I | CGWCG | 1 cut(s) | 2907 |
| HpyAV | CCTTC | 5 cut(s) | 292, 648, 2645, 3019, 3163 |
| HpyCH4III | ACNGT | 4 cut(s) | 1613, 1729, 2419, 2638 |
| HpyCH4IV | ACGT | 2 cut(s) | 891, 1695 |
| HpySE526I | ACGT | 2 cut(s) | 891, 1695 |
| Hsp92I | GRCGYC | 1 cut(s) | 891 |
| HspAI | GCGC | 2 cut(s) | 525, 3206 |
| KroI | GCCGGC | 3 cut(s) | 2422, 2524, 2569 |
| KroNI | GCCGGC | 3 cut(s) | 2424, 2526, 2571 |
| Ksp22I | TGATCA | 1 cut(s) | 3076 |
| LmnI | GCTCC | 3 cut(s) | 137, 1285, 2833 |
| MaeI | CTAG | 4 cut(s) | 2039, 2061, 2304, 2712 |
| MaeII | ACGT | 2 cut(s) | 891, 1695 |
| MaeIII | GTNAC | 8 cut(s) | 145, 1627, 2063, 2413, 2560, 2757, 3047, 3214 |
| MfeI | CAATTG | 2 cut(s) | 1746, 2547 |
| MflI | RGATCY | 3 cut(s) | 554, 2199, 3160 |
| MlsI | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| MluNI | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| MmeI | TCCRAC | 2 cut(s) | 207, 1533 |
| Mox20I | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| Mph1103I | ATGCAT | 1 cut(s) | 610 |
| MroNI | GCCGGC | 3 cut(s) | 2422, 2524, 2569 |
| MscI | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 1434 |
| Msp20I | TGGCCA | 6 cut(s) | 711, 981, 1068, 1155, 1242, 1329 |
| MspA1I | CMGCKG | 5 cut(s) | 542, 677, 1928, 2240, 3061 |
| MspCI | CTTAAG | 1 cut(s) | 3094 |
| MspI | CCGG | 6 cut(s) | 327, 2297, 2423, 2525, 2570, 2785 |
| MspR9I | CCNGG | 2 cut(s) | 2147, 2786 |
| MunI | CAATTG | 2 cut(s) | 1746, 2547 |
| Mva1269I | GAATGC | 1 cut(s) | 3362 |
| MvaI | CCWGG | 1 cut(s) | 2147 |
| NaeI | GCCGGC | 3 cut(s) | 2424, 2526, 2571 |
| NciI | CCSGG | 1 cut(s) | 2786 |
| NcoI | CCATGG | 1 cut(s) | 3000 |
| NdeI | CATATG | 2 cut(s) | 2988, 3313 |
| NgoMIV | GCCGGC | 3 cut(s) | 2422, 2524, 2569 |
| NlaIV | GGNNCC | 2 cut(s) | 133, 390 |
| NmeAIII | GCCGAG | 3 cut(s) | 406, 1890, 2023 |
| NmuCI | GTSAC | 6 cut(s) | 145, 2063, 2413, 2560, 3047, 3214 |
| NsiI | ATGCAT | 1 cut(s) | 610 |
| NspI | RCATGY | 2 cut(s) | 2321, 2753 |
| PaeI | GCATGC | 1 cut(s) | 2753 |
| PagI | TCATGA | 4 cut(s) | 619, 1435, 2044, 3007 |
| PceI | AGGCCT | 1 cut(s) | 2686 |
| PctI | GAATGC | 1 cut(s) | 3362 |
| PdiI | GCCGGC | 3 cut(s) | 2424, 2526, 2571 |
| PflMI | CCANNNNNTGG | 9 cut(s) | 718, 805, 853, 901, 988, 1075, 1162, 1249, 1336 |
| PinAI | ACCGGT | 1 cut(s) | 2296 |
| PpuMI | RGGWCCY | 1 cut(s) | 388 |
| PshBI | ATTAAT | 6 cut(s) | 774, 957, 1044, 1218, 1305, 2538 |
| Psp5II | RGGWCCY | 1 cut(s) | 388 |
| Psp6I | CCWGG | 1 cut(s) | 2145 |
| PspGI | CCWGG | 1 cut(s) | 2145 |
| PspN4I | GGNNCC | 2 cut(s) | 133, 390 |
| PspPI | GGNCC | 3 cut(s) | 388, 1574, 2820 |
| PspPPI | RGGWCCY | 1 cut(s) | 388 |
| PstI | CTGCAG | 1 cut(s) | 3292 |
| PstNI | CAGNNNCTG | 6 cut(s) | 341, 1826, 2330, 2438, 2477, 2624 |
| PsuI | RGATCY | 3 cut(s) | 554, 2199, 3160 |
| PvuII | CAGCTG | 5 cut(s) | 542, 677, 1928, 2240, 3061 |
| RsaI | GTAC | 3 cut(s) | 538, 1698, 3318 |
| RsaNI | GTAC | 3 cut(s) | 537, 1697, 3317 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 1434 |
| Sau96I | GGNCC | 3 cut(s) | 388, 1574, 2820 |
| ScrFI | CCNGG | 2 cut(s) | 2147, 2786 |
| SfcI | CTRYAG | 3 cut(s) | 393, 3288, 3323 |
| SinI | GGWCC | 1 cut(s) | 388 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 1434 |
| SmlI | CTYRAG | 6 cut(s) | 2029, 2205, 2261, 2891, 3094, 3219 |
| SmoI | CTYRAG | 6 cut(s) | 2029, 2205, 2261, 2891, 3094, 3219 |
| SphI | GCATGC | 1 cut(s) | 2753 |
| SseBI | AGGCCT | 1 cut(s) | 2686 |
| SsiI | CCGC | 6 cut(s) | 8, 150, 153, 210, 216, 1947 |
| SspI | AATATT | 1 cut(s) | 1248 |
| SspMI | CTAG | 4 cut(s) | 2039, 2061, 2304, 2712 |
| StuI | AGGCCT | 1 cut(s) | 2686 |
| StyD4I | CCNGG | 2 cut(s) | 2145, 2784 |
| StyI | CCWWGG | 4 cut(s) | 51, 114, 648, 3000 |
| TaaI | ACNGT | 4 cut(s) | 1613, 1729, 2419, 2638 |
| TaiI | ACGT | 2 cut(s) | 894, 1698 |
| TatI | WGTACW | 2 cut(s) | 536, 3316 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TscAI | CASTG | 6 cut(s) | 91, 469, 1576, 2503, 2611, 2641 |
| TseFI | GTSAC | 6 cut(s) | 145, 2063, 2413, 2560, 3047, 3214 |
| Tsp45I | GTSAC | 6 cut(s) | 145, 2063, 2413, 2560, 3047, 3214 |
| TspGWI | ACGGA | 2 cut(s) | 565, 1512 |
| TspRI | CASTG | 6 cut(s) | 91, 469, 1576, 2503, 2611, 2641 |
| Van91I | CCANNNNNTGG | 9 cut(s) | 718, 805, 853, 901, 988, 1075, 1162, 1249, 1336 |
| Vha464I | CTTAAG | 1 cut(s) | 3094 |
| VpaK11BI | GGWCC | 1 cut(s) | 388 |
| VspI | ATTAAT | 6 cut(s) | 774, 957, 1044, 1218, 1305, 2538 |
| XapI | RAATTY | 3 cut(s) | 1942, 1975, 2846 |
| XceI | RCATGY | 2 cut(s) | 2321, 2753 |
| XspI | CTAG | 4 cut(s) | 2039, 2061, 2304, 2712 |
| ZraI | GACGTC | 1 cut(s) | 892 |
| Zsp2I | ATGCAT | 1 cut(s) | 610 |