single fertilization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20970 |
| fragaria_vesca | FvH4_5g26490 FvH4_5g26490 |
| malus_domestica | MD06G1001600.v1.1 |
| prunus_persica | Prupe.5G002400_v2.0.a1 Prupe.5G002400_v2.0.a1 |
| pyrus_communis | pycom06g00170 pycom16g26270 pycom16g26280 |
| rosa_chinensis | RchiOBHm_Chr7g0217401 |
| rosa_laevigata | RLG00000002480 |
| rosa_roxburghii | Rroxscaffold_3G00242210 |
| rosa_rugosa | Rorug07G0168900 |
| rosa_samantha | Rh7AG308500 Rh7BG299200 Rh7CG327800 Rh7DG307800 |
| rosa_wichuraiana | Rw7G026160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 900 |
| Acc36I | ACCTGC | 1 cut(s) | 3343 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 724, 811, 859, 907, 1015 |
| AccBSI | CCGCTC | 1 cut(s) | 3240 |
| AccII | CGCG | 1 cut(s) | 27 |
| AccIII | TCCGGA | 1 cut(s) | 3174 |
| AclI | AACGTT | 1 cut(s) | 2343 |
| AclWI | GGATC | 7 cut(s) | 332, 467, 568, 573, 1186, 2847, 2865 |
| AcoI | YGGCCR | 7 cut(s) | 574, 715, 802, 1006, 3235, 3543, 4005 |
| AcsI | RAATTY | 4 cut(s) | 1621, 1654, 1937, 2525 |
| AcyI | GRCGYC | 1 cut(s) | 897 |
| AfaI | GTAC | 5 cut(s) | 544, 1377, 2997, 3053, 3208 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 583, 724, 811, 859, 907, 1015, 2583, 3675, 3676 |
| AflII | CTTAAG | 1 cut(s) | 2773 |
| AgeI | ACCGGT | 1 cut(s) | 1975 |
| AjnI | CCWGG | 5 cut(s) | 1165, 1824, 3200, 3293, 3674 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| Alw21I | GWGCWC | 1 cut(s) | 2517 |
| Alw26I | GTCTC | 5 cut(s) | 194, 598, 1496, 2684, 3818 |
| AlwI | GGATC | 7 cut(s) | 332, 467, 568, 573, 1186, 2847, 2865 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 347, 1505, 2009, 2117, 2156, 2303, 3476 |
| Ama87I | CYCGRG | 1 cut(s) | 1884 |
| Aor13HI | TCCGGA | 1 cut(s) | 3174 |
| ApoI | RAATTY | 4 cut(s) | 1621, 1654, 1937, 2525 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2683, 2715 |
| AseI | ATTAAT | 5 cut(s) | 780, 963, 984, 2217, 3789 |
| AsiGI | ACCGGT | 1 cut(s) | 1975 |
| AspLEI | GCGC | 3 cut(s) | 533, 2887, 3901 |
| AspS9I | GGNCC | 6 cut(s) | 394, 1253, 2499, 3248, 3667, 3888 |
| AsuC2I | CCSGG | 2 cut(s) | 398, 2465 |
| AsuHPI | GGTGA | 6 cut(s) | 139, 347, 836, 2086, 2233, 3883 |
| AvaI | CYCGRG | 1 cut(s) | 1884 |
| AvaII | GGWCC | 3 cut(s) | 394, 3248, 3888 |
| AxyI | CCTNAGG | 1 cut(s) | 1458 |
| BaeGI | GKGCMC | 2 cut(s) | 1597, 2166 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1413, 1446 |
| BalI | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| BanII | GRGCYC | 3 cut(s) | 644, 765, 1137 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2979, 3011 |
| BbsI | GAAGAC | 1 cut(s) | 3516 |
| Bbv12I | GWGCWC | 1 cut(s) | 2517 |
| BbvCI | CCTCAGC | 3 cut(s) | 315, 535, 771 |
| BccI | CCATC | 7 cut(s) | 122, 1916, 2138, 2285, 3227, 3941, 4016 |
| BceAI | ACGGC | 7 cut(s) | 21, 139, 817, 1781, 1976, 2110, 2736 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2705, 2739 |
| BciT130I | CCWGG | 5 cut(s) | 1167, 1826, 3202, 3295, 3676 |
| BclI | TGATCA | 1 cut(s) | 2755 |
| BcnI | CCSGG | 2 cut(s) | 398, 2465 |
| BcoDI | GTCTC | 5 cut(s) | 194, 598, 1496, 2684, 3818 |
| BfaI | CTAG | 4 cut(s) | 1718, 1740, 1983, 2391 |
| BfmI | CTRYAG | 5 cut(s) | 2967, 3002, 3110, 3384, 3858 |
| BfoI | RGCGCY | 2 cut(s) | 534, 3902 |
| BfrI | CTTAAG | 1 cut(s) | 2773 |
| BfuAI | ACCTGC | 1 cut(s) | 3343 |
| BglII | AGATCT | 1 cut(s) | 1878 |
| Bme1390I | CCNGG | 7 cut(s) | 398, 1167, 1826, 2465, 3202, 3295, 3676 |
| Bme18I | GGWCC | 3 cut(s) | 394, 3248, 3888 |
| BmeT110I | CYCGRG | 1 cut(s) | 1884 |
| BmgT120I | GGNCC | 6 cut(s) | 394, 1253, 2499, 3248, 3667, 3888 |
| BmiI | GGNNCC | 4 cut(s) | 133, 396, 3261, 3890 |
| BmrFI | CCNGG | 7 cut(s) | 398, 1167, 1826, 2465, 3202, 3295, 3676 |
| BpiI | GAAGAC | 1 cut(s) | 3516 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1670, 1702 |
| BpmI | CTGGAG | 6 cut(s) | 1188, 3067, 3384, 3629, 3792, 3825 |
| Bpu10I | CCTNAGC | 6 cut(s) | 315, 535, 771, 2110, 2257, 3627 |
| BpuEI | CTTGAG | 4 cut(s) | 1693, 2102, 2555, 2883 |
| BpuMI | CCSGG | 2 cut(s) | 398, 2465 |
| BsaBI | GATNNNNATC | 2 cut(s) | 21, 1146 |
| BsaHI | GRCGYC | 1 cut(s) | 897 |
| BsaI | GGTCTC | 2 cut(s) | 194, 2684 |
| BsaWI | WCCGGW | 3 cut(s) | 332, 1975, 3174 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 396, 426, 3823, 3853 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 583, 724, 811, 859, 907, 1015, 2583, 3675, 3676 |
| Bse118I | RCCGGY | 3 cut(s) | 1975, 2101, 2203 |
| Bse1I | ACTGG | 3 cut(s) | 1241, 3842, 3873 |
| Bse21I | CCTNAGG | 1 cut(s) | 1458 |
| Bse3DI | GCAATG | 3 cut(s) | 614, 3642, 4039 |
| Bse8I | GATNNNNATC | 2 cut(s) | 21, 1146 |
| BseAI | TCCGGA | 1 cut(s) | 3174 |
| BseBI | CCWGG | 5 cut(s) | 1167, 1826, 3202, 3295, 3676 |
| BseGI | GGATG | 9 cut(s) | 431, 2473, 2632, 2791, 3238, 3933, 3975, 3987, 4008 |
| BseJI | GATNNNNATC | 2 cut(s) | 21, 1146 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 583, 724, 811, 859, 907, 1015, 2583, 3675, 3676 |
| BseMI | GCAATG | 3 cut(s) | 614, 3642, 4039 |
| BseNI | ACTGG | 3 cut(s) | 1241, 3842, 3873 |
| BseRI | GAGGAG | 5 cut(s) | 245, 332, 383, 404, 788 |
| BseSI | GKGCMC | 2 cut(s) | 1597, 2166 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 1 cut(s) | 27 |
| BshTI | ACCGGT | 1 cut(s) | 1975 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2517 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1884 |
| BsiSI | CCGG | 7 cut(s) | 333, 398, 1976, 2102, 2204, 2464, 3175 |
| BslFI | GGGAC | 2 cut(s) | 380, 3874 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 583, 724, 811, 859, 907, 1015, 2583, 3675, 3676 |
| BsmAI | GTCTC | 5 cut(s) | 194, 598, 1496, 2684, 3818 |
| BsmFI | GGGAC | 2 cut(s) | 380, 3874 |
| Bso31I | GGTCTC | 2 cut(s) | 194, 2684 |
| BsoBI | CYCGRG | 1 cut(s) | 1884 |
| Bsp1286I | GDGCHC | 6 cut(s) | 644, 765, 1137, 1597, 2166, 2517 |
| Bsp13I | TCCGGA | 1 cut(s) | 3174 |
| Bsp1407I | TGTACA | 1 cut(s) | 2995 |
| Bsp19I | CCATGG | 1 cut(s) | 2679 |
| Bsp68I | TCGCGA | 1 cut(s) | 27 |
| BspEI | TCCGGA | 1 cut(s) | 3174 |
| BspFNI | CGCG | 1 cut(s) | 27 |
| BspHI | TCATGA | 5 cut(s) | 625, 1114, 1558, 1723, 2686 |
| BspLI | GGNNCC | 4 cut(s) | 133, 396, 3261, 3890 |
| BspMAI | CTGCAG | 3 cut(s) | 2971, 3114, 3388 |
| BspMI | ACCTGC | 1 cut(s) | 3343 |
| BspPI | GGATC | 7 cut(s) | 332, 467, 568, 573, 1186, 2847, 2865 |
| BspTI | CTTAAG | 1 cut(s) | 2773 |
| BspTNI | GGTCTC | 2 cut(s) | 194, 2684 |
| BsrBI | CCGCTC | 1 cut(s) | 3240 |
| BsrDI | GCAATG | 3 cut(s) | 614, 3642, 4039 |
| BsrFI | RCCGGY | 3 cut(s) | 1975, 2101, 2203 |
| BsrGI | TGTACA | 1 cut(s) | 2995 |
| BsrI | ACTGG | 3 cut(s) | 1241, 3842, 3873 |
| BssAI | RCCGGY | 3 cut(s) | 1975, 2101, 2203 |
| BssNI | GRCGYC | 1 cut(s) | 897 |
| BssT1I | CCWWGG | 8 cut(s) | 51, 114, 654, 2679, 3228, 3921, 3977, 4012 |
| Bst2UI | CCWGG | 5 cut(s) | 1167, 1826, 3202, 3295, 3676 |
| Bst4CI | ACNGT | 9 cut(s) | 1292, 1408, 1732, 2098, 2317, 3472, 3835, 3906, 4000 |
| Bst6I | CTCTTC | 7 cut(s) | 231, 1113, 1329, 2541, 3531, 3549, 3702 |
| BstACI | GRCGYC | 1 cut(s) | 897 |
| BstAFI | CTTAAG | 1 cut(s) | 2773 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1409 |
| BstAUI | TGTACA | 1 cut(s) | 2995 |
| BstC8I | GCNNGC | 8 cut(s) | 506, 510, 2103, 2107, 2205, 2250, 2254, 2430 |
| BstDSI | CCRYGG | 2 cut(s) | 582, 2679 |
| BstF5I | GGATG | 9 cut(s) | 431, 2473, 2632, 2791, 3238, 3933, 3975, 3987, 4008 |
| BstFNI | CGCG | 1 cut(s) | 27 |
| BstH2I | RGCGCY | 2 cut(s) | 534, 3902 |
| BstHHI | GCGC | 3 cut(s) | 533, 2887, 3901 |
| BstMAI | GTCTC | 5 cut(s) | 194, 598, 1496, 2684, 3818 |
| BstNI | CCWGG | 5 cut(s) | 1167, 1826, 3202, 3295, 3676 |
| BstNSI | RCATGY | 2 cut(s) | 2000, 2432 |
| BstSCI | CCNGG | 7 cut(s) | 396, 1165, 1824, 2463, 3200, 3293, 3674 |
| BstSFI | CTRYAG | 5 cut(s) | 2967, 3002, 3110, 3384, 3858 |
| BstSLI | GKGCMC | 2 cut(s) | 1597, 2166 |
| BstUI | CGCG | 1 cut(s) | 27 |
| BstV2I | GAAGAC | 1 cut(s) | 3516 |
| BstX2I | RGATCY | 3 cut(s) | 560, 1878, 2839 |
| BstYI | RGATCY | 3 cut(s) | 560, 1878, 2839 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1458 |
| BtgI | CCRYGG | 2 cut(s) | 582, 2679 |
| BtgZI | GCGATG | 3 cut(s) | 8, 42, 141 |
| BtsCI | GGATG | 9 cut(s) | 431, 2473, 2632, 2791, 3238, 3933, 3975, 3987, 4008 |
| BtsI | GCAGTG | 2 cut(s) | 3321, 3393 |
| BtsIMutI | CAGTG | 7 cut(s) | 91, 1255, 2175, 2283, 2313, 3321, 3393 |
| BtuMI | TCGCGA | 1 cut(s) | 27 |
| BveI | ACCTGC | 1 cut(s) | 3343 |
| Cac8I | GCNNGC | 8 cut(s) | 506, 510, 2103, 2107, 2205, 2250, 2254, 2430 |
| CaiI | CAGNNNCTG | 7 cut(s) | 347, 1505, 2009, 2117, 2156, 2303, 3476 |
| CciI | TCATGA | 5 cut(s) | 625, 1114, 1558, 1723, 2686 |
| CfoI | GCGC | 3 cut(s) | 533, 2887, 3901 |
| Cfr10I | RCCGGY | 3 cut(s) | 1975, 2101, 2203 |
| Cfr13I | GGNCC | 6 cut(s) | 394, 1253, 2499, 3248, 3667, 3888 |
| CseI | GACGC | 1 cut(s) | 1754 |
| Csp6I | GTAC | 5 cut(s) | 543, 1376, 2996, 3052, 3207 |
| CspAI | ACCGGT | 1 cut(s) | 1975 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviQI | GTAC | 5 cut(s) | 543, 1376, 2996, 3052, 3207 |
| DraI | TTTAAA | 1 cut(s) | 4054 |
| EaeI | YGGCCR | 7 cut(s) | 574, 715, 802, 1006, 3235, 3543, 4005 |
| Eam1104I | CTCTTC | 7 cut(s) | 231, 1113, 1329, 2541, 3531, 3549, 3702 |
| EarI | CTCTTC | 7 cut(s) | 231, 1113, 1329, 2541, 3531, 3549, 3702 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 8 cut(s) | 51, 114, 654, 2679, 3228, 3921, 3977, 4012 |
| Eco147I | AGGCCT | 1 cut(s) | 2365 |
| Eco24I | GRGCYC | 3 cut(s) | 644, 765, 1137 |
| Eco31I | GGTCTC | 2 cut(s) | 194, 2684 |
| Eco47I | GGWCC | 3 cut(s) | 394, 3248, 3888 |
| Eco81I | CCTNAGG | 1 cut(s) | 1458 |
| Eco88I | CYCGRG | 1 cut(s) | 1884 |
| EcoO109I | RGGNCCY | 2 cut(s) | 394, 3888 |
| EcoRI | GAATTC | 1 cut(s) | 1937 |
| EcoRII | CCWGG | 5 cut(s) | 1165, 1824, 3200, 3293, 3674 |
| EcoT14I | CCWWGG | 8 cut(s) | 51, 114, 654, 2679, 3228, 3921, 3977, 4012 |
| EcoT22I | ATGCAT | 1 cut(s) | 616 |
| EcoT38I | GRGCYC | 3 cut(s) | 644, 765, 1137 |
| ErhI | CCWWGG | 8 cut(s) | 51, 114, 654, 2679, 3228, 3921, 3977, 4012 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2859, 2891 |
| FaqI | GGGAC | 2 cut(s) | 380, 3874 |
| FauI | CCCGC | 1 cut(s) | 3726 |
| FauNDI | CATATG | 2 cut(s) | 2667, 2992 |
| FbaI | TGATCA | 1 cut(s) | 2755 |
| FokI | GGATG | 9 cut(s) | 418, 2480, 2639, 2798, 3245, 3920, 3982, 3994, 3995 |
| FriOI | GRGCYC | 3 cut(s) | 644, 765, 1137 |
| FspBI | CTAG | 4 cut(s) | 1718, 1740, 1983, 2391 |
| GlaI | GCGC | 3 cut(s) | 532, 2886, 3900 |
| GsuI | CTGGAG | 6 cut(s) | 1188, 3067, 3384, 3629, 3792, 3825 |
| HaeII | RGCGCY | 2 cut(s) | 534, 3902 |
| HapII | CCGG | 7 cut(s) | 333, 398, 1976, 2102, 2204, 2464, 3175 |
| HgaI | GACGC | 1 cut(s) | 1754 |
| HhaI | GCGC | 3 cut(s) | 533, 2887, 3901 |
| Hin1I | GRCGYC | 1 cut(s) | 897 |
| Hin6I | GCGC | 3 cut(s) | 531, 2885, 3899 |
| HinP1I | GCGC | 3 cut(s) | 531, 2885, 3899 |
| HincII | GTYRAC | 3 cut(s) | 324, 429, 1908 |
| HindII | GTYRAC | 3 cut(s) | 324, 429, 1908 |
| HindIII | AAGCTT | 1 cut(s) | 1396 |
| HpaII | CCGG | 7 cut(s) | 333, 398, 1976, 2102, 2204, 2464, 3175 |
| HphI | GGTGA | 6 cut(s) | 139, 347, 836, 2086, 2233, 3883 |
| Hpy166II | GTNNAC | 6 cut(s) | 324, 429, 794, 1908, 3209, 3909 |
| Hpy8I | GTNNAC | 6 cut(s) | 324, 429, 794, 1908, 3209, 3909 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 2586 |
| HpyCH4III | ACNGT | 9 cut(s) | 1292, 1408, 1732, 2098, 2317, 3472, 3835, 3906, 4000 |
| HpyCH4IV | ACGT | 4 cut(s) | 897, 1374, 2343, 3601 |
| HpySE526I | ACGT | 4 cut(s) | 897, 1374, 2343, 3601 |
| Hsp92I | GRCGYC | 1 cut(s) | 897 |
| HspAI | GCGC | 3 cut(s) | 531, 2885, 3899 |
| Kpn2I | TCCGGA | 1 cut(s) | 3174 |
| KroI | GCCGGC | 2 cut(s) | 2101, 2203 |
| KroNI | GCCGGC | 2 cut(s) | 2103, 2205 |
| Ksp22I | TGATCA | 1 cut(s) | 2755 |
| LmnI | GCTCC | 5 cut(s) | 137, 2512, 3103, 3400, 3811 |
| MaeI | CTAG | 4 cut(s) | 1718, 1740, 1983, 2391 |
| MaeII | ACGT | 4 cut(s) | 897, 1374, 2343, 3601 |
| MbiI | CCGCTC | 1 cut(s) | 3240 |
| MfeI | CAATTG | 3 cut(s) | 1425, 2226, 3351 |
| MflI | RGATCY | 3 cut(s) | 560, 1878, 2839 |
| MhlI | GDGCHC | 6 cut(s) | 644, 765, 1137, 1597, 2166, 2517 |
| MlsI | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| MluNI | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| MlyI | GAGTC | 9 cut(s) | 173, 329, 428, 488, 659, 1103, 2162, 2279, 2309 |
| MmeI | TCCRAC | 2 cut(s) | 207, 1212 |
| Mox20I | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| Mph1103I | ATGCAT | 1 cut(s) | 616 |
| MroI | TCCGGA | 1 cut(s) | 3174 |
| MroNI | GCCGGC | 2 cut(s) | 2101, 2203 |
| MscI | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 1113 |
| Msp20I | TGGCCA | 4 cut(s) | 717, 1008, 3545, 4007 |
| MspA1I | CMGCKG | 6 cut(s) | 548, 683, 1607, 1919, 2740, 3581 |
| MspCI | CTTAAG | 1 cut(s) | 2773 |
| MspI | CCGG | 7 cut(s) | 333, 398, 1976, 2102, 2204, 2464, 3175 |
| MspR9I | CCNGG | 7 cut(s) | 398, 1167, 1826, 2465, 3202, 3295, 3676 |
| MunI | CAATTG | 3 cut(s) | 1425, 2226, 3351 |
| MvaI | CCWGG | 5 cut(s) | 1167, 1826, 3202, 3295, 3676 |
| MvnI | CGCG | 1 cut(s) | 27 |
| NaeI | GCCGGC | 2 cut(s) | 2103, 2205 |
| NciI | CCSGG | 2 cut(s) | 398, 2465 |
| NcoI | CCATGG | 1 cut(s) | 2679 |
| NdeI | CATATG | 2 cut(s) | 2667, 2992 |
| NgoMIV | GCCGGC | 2 cut(s) | 2101, 2203 |
| NlaIV | GGNNCC | 4 cut(s) | 133, 396, 3261, 3890 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 1569 |
| NmuCI | GTSAC | 7 cut(s) | 145, 1742, 2092, 2239, 2726, 2893, 3871 |
| NruI | TCGCGA | 1 cut(s) | 27 |
| NsiI | ATGCAT | 1 cut(s) | 616 |
| NspI | RCATGY | 2 cut(s) | 2000, 2432 |
| PaeI | GCATGC | 1 cut(s) | 2432 |
| PaeR7I | CTCGAG | 1 cut(s) | 1884 |
| PagI | TCATGA | 5 cut(s) | 625, 1114, 1558, 1723, 2686 |
| PceI | AGGCCT | 1 cut(s) | 2365 |
| PdiI | GCCGGC | 2 cut(s) | 2103, 2205 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 724, 811, 859, 907, 1015 |
| PinAI | ACCGGT | 1 cut(s) | 1975 |
| PleI | GAGTC | 9 cut(s) | 172, 328, 427, 487, 658, 1102, 2161, 2278, 2308 |
| PpsI | GAGTC | 9 cut(s) | 172, 328, 427, 487, 658, 1102, 2161, 2278, 2308 |
| PpuMI | RGGWCCY | 2 cut(s) | 394, 3888 |
| PshBI | ATTAAT | 5 cut(s) | 780, 963, 984, 2217, 3789 |
| Psp1406I | AACGTT | 1 cut(s) | 2343 |
| Psp5II | RGGWCCY | 2 cut(s) | 394, 3888 |
| Psp6I | CCWGG | 5 cut(s) | 1165, 1824, 3200, 3293, 3674 |
| PspGI | CCWGG | 5 cut(s) | 1165, 1824, 3200, 3293, 3674 |
| PspN4I | GGNNCC | 4 cut(s) | 133, 396, 3261, 3890 |
| PspPI | GGNCC | 6 cut(s) | 394, 1253, 2499, 3248, 3667, 3888 |
| PspPPI | RGGWCCY | 2 cut(s) | 394, 3888 |
| PstI | CTGCAG | 3 cut(s) | 2971, 3114, 3388 |
| PstNI | CAGNNNCTG | 7 cut(s) | 347, 1505, 2009, 2117, 2156, 2303, 3476 |
| PsuI | RGATCY | 3 cut(s) | 560, 1878, 2839 |
| PvuII | CAGCTG | 6 cut(s) | 548, 683, 1607, 1919, 2740, 3581 |
| RruI | TCGCGA | 1 cut(s) | 27 |
| RsaI | GTAC | 5 cut(s) | 544, 1377, 2997, 3053, 3208 |
| RsaNI | GTAC | 5 cut(s) | 543, 1376, 2996, 3052, 3207 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 1113 |
| Sau96I | GGNCC | 6 cut(s) | 394, 1253, 2499, 3248, 3667, 3888 |
| SchI | GAGTC | 9 cut(s) | 173, 329, 428, 488, 659, 1103, 2162, 2279, 2309 |
| ScrFI | CCNGG | 7 cut(s) | 398, 1167, 1826, 2465, 3202, 3295, 3676 |
| SduI | GDGCHC | 6 cut(s) | 644, 765, 1137, 1597, 2166, 2517 |
| SfcI | CTRYAG | 5 cut(s) | 2967, 3002, 3110, 3384, 3858 |
| Sfr274I | CTCGAG | 1 cut(s) | 1884 |
| SinI | GGWCC | 3 cut(s) | 394, 3248, 3888 |
| SlaI | CTCGAG | 1 cut(s) | 1884 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 1113 |
| SmlI | CTYRAG | 6 cut(s) | 1708, 1884, 2081, 2570, 2773, 2898 |
| SmoI | CTYRAG | 6 cut(s) | 1708, 1884, 2081, 2570, 2773, 2898 |
| SphI | GCATGC | 1 cut(s) | 2432 |
| SseBI | AGGCCT | 1 cut(s) | 2365 |
| SspMI | CTAG | 4 cut(s) | 1718, 1740, 1983, 2391 |
| StuI | AGGCCT | 1 cut(s) | 2365 |
| StyD4I | CCNGG | 7 cut(s) | 396, 1165, 1824, 2463, 3200, 3293, 3674 |
| StyI | CCWWGG | 8 cut(s) | 51, 114, 654, 2679, 3228, 3921, 3977, 4012 |
| TaaI | ACNGT | 9 cut(s) | 1292, 1408, 1732, 2098, 2317, 3472, 3835, 3906, 4000 |
| TaiI | ACGT | 4 cut(s) | 900, 1377, 2346, 3604 |
| TaqI | TCGA | 2 cut(s) | 1885, 3846 |
| TatI | WGTACW | 3 cut(s) | 542, 2995, 3206 |
| TauI | GCSGC | 3 cut(s) | 155, 3240, 4041 |
| TscAI | CASTG | 7 cut(s) | 91, 1255, 2182, 2290, 2320, 3321, 3393 |
| TseFI | GTSAC | 7 cut(s) | 145, 1742, 2092, 2239, 2726, 2893, 3871 |
| Tsp45I | GTSAC | 7 cut(s) | 145, 1742, 2092, 2239, 2726, 2893, 3871 |
| TspGWI | ACGGA | 1 cut(s) | 571 |
| TspRI | CASTG | 7 cut(s) | 91, 1255, 2182, 2290, 2320, 3321, 3393 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 724, 811, 859, 907, 1015 |
| Vha464I | CTTAAG | 1 cut(s) | 2773 |
| VpaK11BI | GGWCC | 3 cut(s) | 394, 3248, 3888 |
| VspI | ATTAAT | 5 cut(s) | 780, 963, 984, 2217, 3789 |
| XapI | RAATTY | 4 cut(s) | 1621, 1654, 1937, 2525 |
| XceI | RCATGY | 2 cut(s) | 2000, 2432 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3301 |
| XhoI | CTCGAG | 1 cut(s) | 1884 |
| XspI | CTAG | 4 cut(s) | 1718, 1740, 1983, 2391 |
| ZraI | GACGTC | 1 cut(s) | 898 |
| Zsp2I | ATGCAT | 1 cut(s) | 616 |