MD06G1007800.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0018096
Physical Location & Seq
Reverse (-)
866236 .. 866628
393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1007800.v1.1.491

Sequence Viewer

Length: 393 bp
ATGATGAAGATAACGCTGCTCGTCTTGCTCATTTTTTTGTCATTGCTGTTGTTATGCAGCGGTAATTTGGAGAGAGAGGTGGTTATAACTAATTATTTAGGTCCAGGGATCGTTTTGAGGATTCGCTGCCAATCCGGAGACGATAACCTTGGCCTGCATGACTTAATGTTTATGGACTCGTTTTCATGGAAGTTCAAAACTAATTCGCTCACCACATTGTTCTTTTGCACCATGTGGTGGGAAGATGTCAGCGGAAGCTTTGAGGTGTACAATGCTCTGAGAGATGAAAAGCGGTGTATAACTCACTGTTGGTGGAACATTCTTCAACTTGCAGCTTTTACGTATAATGAATTCAACGGAGCATGGGATATTGGGTATGAGTGGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

131

Amino Acids

15.28

Weight (kDa)

5.02

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 26 - 128 9.6e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 3 cut(s) 60, 252, 292
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 3 cut(s) 196, 326, 355
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 258, 335
AluI AGCT 2 cut(s) 258, 335
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 4 cut(s) 16, 57, 126, 332
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 101
BbvI GCAGC 4 cut(s) 3, 69, 113, 344
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 4 cut(s) 17, 58, 127, 333
BlsI GCNGC 4 cut(s) 18, 59, 128, 334
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 104, 148
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 104, 148
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 3, 69, 113, 344
BshFI GGCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 3 cut(s) 60, 252, 292
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 134
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 104, 148
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 278
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSNI TACGTA 1 cut(s) 342
BstV1I GCAGC 4 cut(s) 3, 69, 113, 344
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 268
CviAII CATG 4 cut(s) 158, 186, 232, 363
CviJI RGCY 3 cut(s) 153, 258, 335
CviKI_1 RGCY 3 cut(s) 153, 258, 335
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DraIII CACNNNGTG 1 cut(s) 234
Eco105I TACGTA 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 4 cut(s) 161, 189, 235, 366
FatI CATG 4 cut(s) 157, 185, 231, 362
Fnu4HI GCNGC 4 cut(s) 17, 58, 127, 333
Fsp4HI GCNGC 4 cut(s) 17, 58, 127, 333
GluI GCNGC 4 cut(s) 17, 58, 127, 333
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 135
Hin1II CATG 4 cut(s) 161, 189, 235, 366
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 2 cut(s) 121, 176
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 57, 157, 228, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 4 cut(s) 161, 189, 235, 366
Kpn2I TCCGGA 1 cut(s) 134
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 4 cut(s) 90, 117, 148, 167
Lsp1109I GCAGC 4 cut(s) 3, 69, 113, 344
MaeII ACGT 1 cut(s) 341
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 3 cut(s) 19, 254, 314
MluCI AATT 4 cut(s) 64, 91, 202, 350
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 3 cut(s) 70, 111, 256
MroI TCCGGA 1 cut(s) 134
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 60, 252
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 1 cut(s) 108
NlaIII CATG 4 cut(s) 161, 189, 235, 366
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 4 cut(s) 18, 59, 128, 334
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 342
PsiI TTATAA 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 17, 58, 127, 333
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 105
SetI ASST 7 cut(s) 81, 103, 150, 260, 267, 337, 344
SinI GGWCC 1 cut(s) 101
SnaBI TACGTA 1 cut(s) 342
Sse9I AATT 4 cut(s) 64, 91, 202, 350
SsiI CCGC 3 cut(s) 60, 252, 292
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 344
TasI AATT 4 cut(s) 64, 91, 202, 350
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 311
TseI GCWGC 4 cut(s) 16, 57, 126, 332
TspDTI ATGAA 4 cut(s) 20, 174, 300, 363
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.