RLG00000018689

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018096
Physical Location & Seq
Forward (+)
33969006 .. 33969410
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018689

Sequence Viewer

Length: 405 bp
ATGGTTAAGATATCGGTAGCCTTGCTTCTCTTCACATTACATATCTTATTGCTATCGGAGGGTGGTTCTGCGTCTCAAGACAGAGTGGTGAACATAACCAATGATTTGAATGAATTTATTCCGTTGACGATTCACTGCCAATCCAAGGACAATGACCTTGGGGAACACGAGCTCCAGTATCACACCTTCTTTCATTGGCAGTTCAAATCCAATATTCCACTACGCAACACGGTTTTTTGGTGCAGCATGTCGTGGCAAGGTATCGTCAATGGAACCTTTGATGTGTATAGAGCTGAAAGAGACGATGAGCGGTGTGCGCAATTTTGCATGTGGAAAATCAGACAAACAGGAGCTTACTCCTTTAGTGAGGCTGATCAGAGATGGGATCTCATGTATATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.83

Weight (kDa)

5.41

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 134 1.1e-30 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 109, 205
AloI GAACNNNNNNTCC 2 cut(s) 156, 188
AluBI AGCT 3 cut(s) 172, 293, 353
AluI AGCT 3 cut(s) 172, 293, 353
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 78, 294
AlwI GGATC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 4 cut(s) 9, 41, 170, 202
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 375
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 78, 294
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 144, 157
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 144, 157
BseLI CCNNNNNNNGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 78, 294
BsmBI CGTCTC 2 cut(s) 78, 294
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 373, 385
BspACI CCGC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 393
BsrBI CCGCTC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 144, 157
BssMI GATC 2 cut(s) 373, 385
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 144, 157
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 35
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 376, 388
BstMAI GTCTC 2 cut(s) 78, 294
BstMBI GATC 2 cut(s) 373, 385
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNSI RCATGY 2 cut(s) 250, 331
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 319
CseI GACGC 1 cut(s) 60
CviAII CATG 3 cut(s) 247, 328, 391
CviJI RGCY 5 cut(s) 20, 172, 293, 353, 371
CviKI_1 RGCY 5 cut(s) 20, 172, 293, 353, 371
DpnI GATC 2 cut(s) 375, 387
DpnII GATC 2 cut(s) 373, 385
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 144, 157
Eco24I GRGCYC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 2 cut(s) 144, 157
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 144, 157
Esp3I CGTCTC 2 cut(s) 78, 294
FaeI CATG 3 cut(s) 250, 331, 394
FaiI YATR 7 cut(s) 42, 95, 248, 288, 329, 392, 396
FatI CATG 3 cut(s) 246, 327, 390
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 244
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 158
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 250, 331, 394
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 1 cut(s) 130
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 91, 126
Hpy188I TCNGA 3 cut(s) 58, 341, 378
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 2 cut(s) 91, 126
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 243, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
Hsp92II CATG 3 cut(s) 250, 331, 394
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 373, 385
LmnI GCTCC 2 cut(s) 177, 350
LpnPI CCDG 2 cut(s) 188, 333
Lsp1109I GCAGC 1 cut(s) 255
MalI GATC 2 cut(s) 375, 387
MbiI CCGCTC 1 cut(s) 310
MboI GATC 2 cut(s) 373, 385
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 113, 320
MnlI CCTC 2 cut(s) 52, 361
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 2 cut(s) 373, 385
NlaIII CATG 3 cut(s) 250, 331, 394
NlaIV GGNNCC 1 cut(s) 274
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 2 cut(s) 250, 331
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 385
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 373, 385
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 159, 174, 188, 262, 278, 295, 355
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 2 cut(s) 113, 320
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 214
SstI GAGCTC 1 cut(s) 174
StyI CCWWGG 2 cut(s) 144, 157
TaaI ACNGT 1 cut(s) 232
TasI AATT 2 cut(s) 113, 320
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 140
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 126, 182
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 1 cut(s) 140
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 250, 331
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.