Prupe.4G273700_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018096
Physical Location & Seq
Forward (+)
22735845 .. 22738228
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G273700.1

Sequence Viewer

Length: 579 bp
ATGGTCTTGCTTATGATGATATCGTTATTCCAGAGTGGTTTTGCTATAGAACCTGCTTTAACGAGAGTTGTGAACATAACTAATGACCTGGGGTCGGGGATTGGGTTGATTATTCACTGCAAATCAGCGGACAATGATCTTGGCAAACACGAAGTCCCGTTTCAATCCCACTTTTCATGGAGCTTCAAATCCAATCCCCTTTTTCAAAACACAGAATTCTATTGCTACATGTGGTGGGAAAATGTTAGCGGAAGCTTCGATGTGTACAAAGCTGTTAGAGATGATGAAAGATGTGCAAGTAAGTGTTGGTGGAGCATTAGAACCATTGGAGCCTTTTCTTATAATGAAAACCTAGATAGGTGGGATCTTATGTATATTTGCAACCAATGGCAGTACTTTCTTCTTCTGCAACTCCACGTTCCCACATGTGCTTTATATGCTTTCTTCTTCTGCATCTGCACATATTCCCAAACCCCAAACCCATATGTTGATGACGTATGTGTCTTTGTGTCTTTGAGATACACAAAGGCACATACGCATCAAAATCCTGACTATTTGCCTCTAAACCAAACCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

193

Amino Acids

22.44

Weight (kDa)

5.58

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AasI GACNNNNNNGTC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 2 cut(s) 128, 249
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 2 cut(s) 266, 395
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 2 cut(s) 228, 425
AgsI TTSAA 3 cut(s) 164, 187, 206
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 183, 255, 272
AluI AGCT 3 cut(s) 183, 255, 272
AlwI GGATC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 462, 547
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 442
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 136, 364
BspACI CCGC 2 cut(s) 128, 249
BspLI GGNNCC 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 136, 364
Bst2UI CCWGG 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 264
BstKTI GATC 2 cut(s) 139, 367
BstMBI GATC 2 cut(s) 136, 364
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 2 cut(s) 232, 429
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 265, 394
CviAII CATG 3 cut(s) 177, 229, 426
CviJI RGCY 4 cut(s) 183, 255, 272, 332
CviKI_1 RGCY 4 cut(s) 183, 255, 272, 332
CviQI GTAC 2 cut(s) 265, 394
DpnI GATC 2 cut(s) 138, 366
DpnII GATC 2 cut(s) 136, 364
DrdI GACNNNNNNGTC 1 cut(s) 500
DriI GACNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 500
Eam1105I GACNNNNNGTC 1 cut(s) 91
Eco32I GATATC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 21
FaeI CATG 3 cut(s) 180, 232, 429
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 176, 228, 425
FauNDI CATATG 1 cut(s) 484
FspBI CTAG 1 cut(s) 353
Hin1II CATG 3 cut(s) 180, 232, 429
HindIII AAGCTT 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 73, 265
Hpy188III TCNNGA 2 cut(s) 31, 548
Hpy8I GTNNAC 2 cut(s) 73, 265
HpyCH4IV ACGT 2 cut(s) 417, 495
HpyCH4V TGCA 6 cut(s) 120, 296, 381, 409, 453, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpySE526I ACGT 2 cut(s) 417, 495
Hsp92II CATG 3 cut(s) 180, 232, 429
Kzo9I GATC 2 cut(s) 136, 364
LmnI GCTCC 3 cut(s) 180, 312, 329
LpnPI CCDG 5 cut(s) 44, 66, 74, 101, 561
LweI GCATC 2 cut(s) 462, 547
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 417, 495
MalI GATC 2 cut(s) 138, 366
MboI GATC 2 cut(s) 136, 364
MboII GAAGA 4 cut(s) 392, 395, 436, 439
MflI RGATCY 1 cut(s) 364
MluCI AATT 1 cut(s) 215
MnlI CCTC 1 cut(s) 570
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeI CATATG 1 cut(s) 484
NdeII GATC 2 cut(s) 136, 364
NlaIII CATG 3 cut(s) 180, 232, 429
NlaIV GGNNCC 1 cut(s) 331
NspI RCATGY 2 cut(s) 232, 429
PciI ACATGT 2 cut(s) 228, 425
PscI ACATGT 2 cut(s) 228, 425
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 266, 395
RsaNI GTAC 2 cut(s) 265, 394
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 2 cut(s) 136, 364
ScaI AGTACT 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 89
SetI ASST 9 cut(s) 55, 90, 185, 257, 274, 354, 362, 420, 498
SfaNI GCATC 2 cut(s) 462, 547
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 215
SsiI CCGC 2 cut(s) 128, 249
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 2 cut(s) 420, 498
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 215
TatI WGTACW 2 cut(s) 264, 393
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 165, 300, 360
TspRI CASTG 1 cut(s) 122
XapI RAATTY 1 cut(s) 215
XceI RCATGY 2 cut(s) 232, 429
XspI CTAG 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.