MD06G1095700.v1.1

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013503
Physical Location & Seq
Reverse (-)
22943389 .. 22946668
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1095700.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGTTGAGCTCCACTTGCTCTCACTCTCTTATCCACCGCCCCTTCCTCCATTCCTCCTCCGCCGCCAGAGCTAGGGTTCCGACCCGACCCGGAGCTTTACGTCCAATTTCCCGGAGTTTTAGGACCTTCGAATCTCAATCCAGACCGTATAATACGAGGTGGACTAGAATTTCATGTTTTAGGCAAGAGAAGTTCCCTTCAGAAACACCGAAACCGGAATATATTGAACACTTGGTGCCCGAGGAAGTAGTCAAGTCCGAGTTCGATGATTCTAAGGTGGTTAAAAGGGATTGGGGAGGAACGCTCCGAGAGGCTGCAGATGTAGTGTCTAGAGCAATTGGGAGTCGTTGGAGTGTGCCGTGGTCAGCAGAGACCATATTGCAGGTCATGCTACTATGGGTTGCTGCTTTCTGCTTCACAGGTTCTTGGATGGTTCCATTTGCAGCTCACGTGGCAGGTTTCAGCAGGGAATCATTAACGAATAGAGGACAAGCCTTATTTAGCCTGGTGACTGATGTAACTGAAGGTCTTGTTGGAATTATGATAATTTGTCGCTGCTTATCTCGTTTTCGCCCTCTTCCTCCTGATTGGTTTAAATTTAGCTTGAAGGGGACCTGGCAGTTGGATGTTGCTCTTGGATGCCTTATGTTTCCCCTTGTCAATCGGCTCTCACAGTTCAACCTCAGTCTGCTCCCTCTTTTGCCTTCCACCCCGGTCACAGTATCAAGTGTTGAGCAATCAATTATGGCACGTGATCCAGTGGCTATGGCAATGTATGCAGTAGTAGTTTCAGTGTGTGCTCCCATGTGGGAGGAGATACTCTTCAGGGGTTTCTTACTGCCTTCCTTAACCAAGTACATGCCCGTATGGTCTGCGGTATTGGTGAGCTCGGTTGTATTTGCTTTAGCACATTGGAATGTACAGAGGATTCTACCGCTTATTTTCCTTGGGGTGGTGATGGGCGTTGTATTCGCACGGTCAAGGAATCTATTGCCATCGATGCTCTTGCACAGCCTTTGGAATGGCTTTGTATTTTTAGATTTAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

351

Amino Acids

39.49

Weight (kDa)

9.67

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 257 - 342 7.9e-23 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 373, 446
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 5 cut(s) 37, 60, 63, 875, 935
AclWI GGATC 1 cut(s) 749
AcsI RAATTY 2 cut(s) 168, 596
AcuI CTGAAG 3 cut(s) 183, 543, 808
AcvI CACGTG 2 cut(s) 451, 752
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 857, 921
AfiI CCNNNNNNNGG 2 cut(s) 72, 952
AgsI TTSAA 3 cut(s) 227, 607, 679
AjnI CCWGG 2 cut(s) 504, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 6 cut(s) 9, 71, 95, 446, 603, 888
AluI AGCT 6 cut(s) 9, 71, 95, 446, 603, 888
Alw21I GWGCWC 3 cut(s) 11, 802, 890
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 4 cut(s) 314, 404, 443, 555
ApoI RAATTY 2 cut(s) 168, 596
AspS9I GGNCC 2 cut(s) 123, 612
AsuC2I CCSGG 3 cut(s) 90, 112, 713
AsuHPI GGTGA 3 cut(s) 520, 895, 967
AsuII TTCGAA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 123, 612
BaeGI GKGCMC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 2 cut(s) 11, 890
BbrPI CACGTG 2 cut(s) 451, 752
Bbv12I GWGCWC 3 cut(s) 11, 802, 890
BbvI GCAGC 4 cut(s) 301, 391, 455, 542
BccI CCATC 3 cut(s) 424, 952, 1003
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 988, 1022
BciT130I CCWGG 2 cut(s) 506, 616
BcnI CCSGG 3 cut(s) 90, 112, 713
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 3 cut(s) 72, 165, 330
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 2 cut(s) 373, 446
BisI GCNGC 5 cut(s) 63, 315, 405, 444, 556
BlsI GCNGC 5 cut(s) 64, 316, 406, 445, 557
Bme1390I CCNGG 5 cut(s) 90, 112, 506, 616, 713
Bme18I GGWCC 2 cut(s) 123, 612
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 123, 612
BmiI GGNNCC 4 cut(s) 78, 237, 435, 613
BmrFI CCNGG 5 cut(s) 90, 112, 506, 616, 713
BmsI GCATC 2 cut(s) 629, 990
BplI GAGNNNNNCTC 2 cut(s) 288, 320
Bpu14I TTCGAA 1 cut(s) 129
BpuMI CCSGG 3 cut(s) 90, 112, 713
Bsa29I ATCGAT 1 cut(s) 998
BsaAI YACGTR 2 cut(s) 451, 752
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 4 cut(s) 240, 359, 711, 946
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 952
Bse1I ACTGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 2 cut(s) 506, 616
BseCI ATCGAT 1 cut(s) 998
BseDI CCNNGG 4 cut(s) 240, 359, 711, 946
BseGI GGATG 3 cut(s) 435, 631, 644
BseLI CCNNNNNNNGG 2 cut(s) 72, 952
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 2 cut(s) 46, 827
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 4 cut(s) 301, 391, 455, 542
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 998
BsiHKAI GWGCWC 3 cut(s) 11, 802, 890
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 90, 112, 215, 713
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 2 cut(s) 72, 952
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 625
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 4 cut(s) 11, 240, 802, 890
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 1 cut(s) 754
BspACI CCGC 5 cut(s) 37, 60, 63, 875, 935
BspCNI CTCAG 1 cut(s) 696
BspDI ATCGAT 1 cut(s) 998
BspLI GGNNCC 4 cut(s) 78, 237, 435, 613
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 2 cut(s) 373, 446
BspPI GGATC 1 cut(s) 749
BspT104I TTCGAA 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 1 cut(s) 758
BssECI CCNNGG 4 cut(s) 240, 359, 711, 946
BssMI GATC 1 cut(s) 754
BssT1I CCWWGG 1 cut(s) 946
Bst2UI CCWGG 2 cut(s) 506, 616
Bst4CI ACNGT 4 cut(s) 147, 675, 721, 978
Bst6I CTCTTC 2 cut(s) 582, 827
BstAPI GCANNNNNTGC 2 cut(s) 388, 776
BstAUI TGTACA 1 cut(s) 919
BstBAI YACGTR 2 cut(s) 451, 752
BstBI TTCGAA 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 273, 683
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 3 cut(s) 435, 631, 644
BstKTI GATC 1 cut(s) 757
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 1 cut(s) 754
BstMWI GCNNNNNNNGC 6 cut(s) 15, 68, 388, 452, 776, 1000
BstNI CCWGG 2 cut(s) 506, 616
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 5 cut(s) 88, 110, 504, 614, 711
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 301, 391, 455, 542
Bsu15I ATCGAT 1 cut(s) 998
BsuTUI ATCGAT 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 3 cut(s) 435, 631, 644
BtsIMutI CAGTG 2 cut(s) 765, 798
BveI ACCTGC 2 cut(s) 373, 446
Cfr13I GGNCC 2 cut(s) 123, 612
ClaI ATCGAT 1 cut(s) 998
Csp6I GTAC 2 cut(s) 856, 920
CviAII CATG 4 cut(s) 174, 388, 805, 859
CviQI GTAC 2 cut(s) 856, 920
DdeI CTNAG 2 cut(s) 273, 683
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
DraI TTTAAA 1 cut(s) 595
DraIII CACNNNGTG 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 582, 827
EarI CTCTTC 2 cut(s) 582, 827
EciI GGCGGA 1 cut(s) 49
Ecl136II GAGCTC 2 cut(s) 9, 888
Eco130I CCWWGG 1 cut(s) 946
Eco24I GRGCYC 2 cut(s) 11, 890
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 2 cut(s) 123, 612
Eco53kI GAGCTC 2 cut(s) 9, 888
Eco57I CTGAAG 3 cut(s) 183, 543, 808
Eco72I CACGTG 2 cut(s) 451, 752
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 2 cut(s) 9, 888
EcoO109I RGGNCCY 2 cut(s) 123, 612
EcoRII CCWGG 2 cut(s) 504, 614
EcoT14I CCWWGG 1 cut(s) 946
EcoT38I GRGCYC 2 cut(s) 11, 890
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 4 cut(s) 177, 391, 808, 862
FaqI GGGAC 1 cut(s) 625
FatI CATG 4 cut(s) 173, 387, 804, 858
Fnu4HI GCNGC 5 cut(s) 63, 315, 405, 444, 556
FokI GGATG 3 cut(s) 442, 638, 651
FriOI GRGCYC 2 cut(s) 11, 890
Fsp4HI GCNGC 5 cut(s) 63, 315, 405, 444, 556
FspBI CTAG 3 cut(s) 72, 165, 330
GluI GCNGC 5 cut(s) 63, 315, 405, 444, 556
HapII CCGG 4 cut(s) 90, 112, 215, 713
Hin1II CATG 4 cut(s) 177, 391, 808, 862
HinfI GANTC 6 cut(s) 131, 269, 343, 470, 928, 985
HpaII CCGG 4 cut(s) 90, 112, 215, 713
HphI GGTGA 3 cut(s) 520, 895, 967
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 4 cut(s) 81, 202, 259, 308
Hpy188III TCNNGA 3 cut(s) 141, 330, 584
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 7 cut(s) 52, 136, 207, 518, 601, 714, 852
HpyCH4III ACNGT 4 cut(s) 147, 675, 721, 978
HpyCH4IV ACGT 3 cut(s) 100, 450, 751
HpyCH4V TGCA 5 cut(s) 317, 382, 443, 779, 1009
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 68, 388, 452, 776, 1000
HpyF3I CTNAG 2 cut(s) 273, 683
HpySE526I ACGT 3 cut(s) 100, 450, 751
Hsp92II CATG 4 cut(s) 177, 391, 808, 862
Kzo9I GATC 1 cut(s) 754
LmnI GCTCC 5 cut(s) 14, 92, 309, 696, 805
Lsp1109I GCAGC 4 cut(s) 301, 391, 455, 542
LweI GCATC 2 cut(s) 629, 990
MaeI CTAG 3 cut(s) 72, 165, 330
MaeII ACGT 3 cut(s) 100, 450, 751
MaeIII GTNAC 3 cut(s) 508, 517, 715
MalI GATC 1 cut(s) 756
MboI GATC 1 cut(s) 754
MboII GAAGA 2 cut(s) 569, 814
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 4 cut(s) 11, 240, 802, 890
MluCI AATT 7 cut(s) 105, 168, 336, 537, 546, 596, 741
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 4 cut(s) 104, 329, 514, 603
MseI TTAA 5 cut(s) 282, 476, 594, 848, 1043
MslI CAYNNNNRTG 1 cut(s) 915
MspI CCGG 4 cut(s) 90, 112, 215, 713
MspR9I CCNGG 5 cut(s) 90, 112, 506, 616, 713
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 506, 616
MwoI GCNNNNNNNGC 6 cut(s) 15, 68, 388, 452, 776, 1000
NciI CCSGG 3 cut(s) 90, 112, 713
NdeII GATC 1 cut(s) 754
NlaIII CATG 4 cut(s) 177, 391, 808, 862
NlaIV GGNNCC 4 cut(s) 78, 237, 435, 613
NmuCI GTSAC 2 cut(s) 508, 715
NspI RCATGY 1 cut(s) 862
NspV TTCGAA 1 cut(s) 129
PfeI GAWTC 5 cut(s) 131, 269, 470, 928, 985
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 5 cut(s) 64, 316, 406, 445, 557
PleI GAGTC 1 cut(s) 351
PmaCI CACGTG 2 cut(s) 451, 752
PmlI CACGTG 2 cut(s) 451, 752
PpsI GAGTC 1 cut(s) 351
Ppu21I YACGTR 2 cut(s) 451, 752
PpuMI RGGWCCY 2 cut(s) 123, 612
Psp124BI GAGCTC 2 cut(s) 11, 890
Psp5II RGGWCCY 2 cut(s) 123, 612
Psp6I CCWGG 2 cut(s) 504, 614
PspCI CACGTG 2 cut(s) 451, 752
PspGI CCWGG 2 cut(s) 504, 614
PspN4I GGNNCC 4 cut(s) 78, 237, 435, 613
PspPI GGNCC 2 cut(s) 123, 612
PspPPI RGGWCCY 2 cut(s) 123, 612
PstI CTGCAG 1 cut(s) 319
RsaI GTAC 2 cut(s) 857, 921
RsaNI GTAC 2 cut(s) 856, 920
RseI CAYNNNNRTG 1 cut(s) 915
SacI GAGCTC 2 cut(s) 11, 890
SaqAI TTAA 5 cut(s) 282, 476, 594, 848, 1043
SatI GCNGC 5 cut(s) 63, 315, 405, 444, 556
Sau3AI GATC 1 cut(s) 754
Sau96I GGNCC 2 cut(s) 123, 612
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 5 cut(s) 90, 112, 506, 616, 713
SduI GDGCHC 4 cut(s) 11, 240, 802, 890
SfaNI GCATC 2 cut(s) 629, 990
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 2 cut(s) 123, 612
SmiMI CAYNNNNRTG 1 cut(s) 915
Sse9I AATT 7 cut(s) 105, 168, 336, 537, 546, 596, 741
SsiI CCGC 5 cut(s) 37, 60, 63, 875, 935
SspMI CTAG 3 cut(s) 72, 165, 330
SstI GAGCTC 2 cut(s) 11, 890
StyD4I CCNGG 5 cut(s) 88, 110, 504, 614, 711
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 4 cut(s) 147, 675, 721, 978
TaiI ACGT 3 cut(s) 103, 453, 754
TaqI TCGA 3 cut(s) 129, 264, 998
TasI AATT 7 cut(s) 105, 168, 336, 537, 546, 596, 741
TatI WGTACW 2 cut(s) 855, 919
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 5 cut(s) 131, 269, 470, 928, 985
Tru1I TTAA 5 cut(s) 282, 476, 594, 848, 1043
Tru9I TTAA 5 cut(s) 282, 476, 594, 848, 1043
TscAI CASTG 2 cut(s) 765, 798
TseFI GTSAC 2 cut(s) 508, 715
TseI GCWGC 4 cut(s) 314, 404, 443, 555
Tsp45I GTSAC 2 cut(s) 508, 715
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 2 cut(s) 765, 798
VpaK11BI GGWCC 2 cut(s) 123, 612
XapI RAATTY 2 cut(s) 168, 596
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 862
XspI CTAG 3 cut(s) 72, 165, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.