Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003061.1

Orthogroup ID

OG0013503

Physical Location & Seq

Genomic Coordinates Forward (+)

157 .. 831

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgcaggttatgctactctgggttgttgctttctggttcataggttcttggatggttccatttgcagctcacctggctggtttcaacagggaatcattaacatttagaggccaagccttattcagcctagtgactgatgtaactgaaggtcttgctggcattatgatccttcatcgctgcttatctcgtttccgtccacttcctcctgattggtttaaatttagcttgaaaggaacatggcagatagatgttgtgctaggctgcctcatgtttccctttgtcaatcggctatcgcaatttaacctcaacctattaccactcttgccgtccacccctgttacgatatcaagtgttgagcaatcaattttggcgcgtgatccgatagcaatggcactgtatgcaatagtagtttcagtgtgtgcgcccgtgtgggaggagatagtctttaggggtttcctactcccttcattgaccaagtacatgcccgtgtggtgtgcaatattggttagtgcagttgtctttgctttagcacacttcaatgtacagaggatgctaccacttgttttccttggggtggtgatgggtgctatatttgcacggtcaaggaatctattaccatcgatgctcttgcacagcctttggaatggctttgtatttttagacttaatgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

224

Amino Acids

25.29

Weight (kDa)

9.38

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60750
fragaria_vesca	FvH4_5g03580
malus_domestica	MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica	Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis	pycom06g09200
rosa_chinensis	RchiOBHm_Chr7g0196131
rosa_laevigata	RLG00000004061
rosa_multiflora	Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259750
rosa_rugosa	Rorug07G0030800
rosa_samantha	Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana	Rw7G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	373
AclWI	GGATC	2 cut(s)	160, 371
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	479, 543
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	85, 229, 538
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	68, 225
AluI	AGCT	2 cut(s)	68, 225
AlwI	GGATC	2 cut(s)	160, 371
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	65, 177, 261
ApoI	RAATTY	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	373, 424
AsuHPI	GGTGA	2 cut(s)	62, 589
BbvI	GCAGC	3 cut(s)	77, 164, 248
BccI	CCATC	3 cut(s)	46, 574, 625
BceAI	ACGGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	610, 644
BciT130I	CCWGG	1 cut(s)	74
BfaI	CTAG	2 cut(s)	128, 257
BisI	GCNGC	3 cut(s)	66, 178, 262
BlsI	GCNGC	3 cut(s)	67, 179, 263
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	540, 612
Bsa29I	ATCGAT	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	57, 555
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	77, 164, 248
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	574
BsnI	GGCC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	165, 376
BspANI	GGCC	1 cut(s)	111
BspDI	ATCGAT	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	160, 371
BsrDI	GCAATG	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	165, 376
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	396, 600
BstAPI	GCANNNNNTGC	2 cut(s)	10, 398
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	57, 555
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	373, 424
BstKTI	GATC	2 cut(s)	168, 379
BstMBI	GATC	2 cut(s)	165, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 74, 398, 593
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	77, 164, 248
Bsu15I	ATCGAT	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	620
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	57, 555
BtsIMutI	CAGTG	2 cut(s)	392, 420
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	2 cut(s)	373, 424
ClaI	ATCGAT	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	478, 542
CviAII	CATG	3 cut(s)	237, 268, 481
CviQI	GTAC	2 cut(s)	478, 542
DpnI	GATC	2 cut(s)	167, 378
DpnII	GATC	2 cut(s)	165, 376
DraI	TTTAAA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	3 cut(s)	240, 271, 484
FaiI	YATR	8 cut(s)	11, 41, 164, 238, 269, 399, 482, 590
FatI	CATG	3 cut(s)	236, 267, 480
Fnu4HI	GCNGC	3 cut(s)	66, 178, 262
FokI	GGATG	2 cut(s)	64, 562
Fsp4HI	GCNGC	3 cut(s)	66, 178, 262
FspBI	CTAG	2 cut(s)	128, 257
GlaI	GCGC	2 cut(s)	372, 423
GluI	GCNGC	3 cut(s)	66, 178, 262
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	2 cut(s)	373, 424
Hin1II	CATG	3 cut(s)	240, 271, 484
Hin6I	GCGC	2 cut(s)	371, 422
HinP1I	GCGC	2 cut(s)	371, 422
HinfI	GANTC	2 cut(s)	92, 607
HphI	GGTGA	2 cut(s)	62, 589
Hpy166II	GTNNAC	2 cut(s)	197, 330
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	197, 330
HpyAV	CCTTC	3 cut(s)	140, 179, 474
HpyCH4III	ACNGT	2 cut(s)	396, 600
HpyCH4V	TGCA	7 cut(s)	4, 65, 401, 497, 512, 596, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 74, 398, 593
Hsp92II	CATG	3 cut(s)	240, 271, 484
HspAI	GCGC	2 cut(s)	371, 422
Kzo9I	GATC	2 cut(s)	165, 376
LpnPI	CCDG	9 cut(s)	4, 19, 59, 63, 73, 86, 141, 219, 348
Lsp1109I	GCAGC	3 cut(s)	77, 164, 248
LweI	GCATC	2 cut(s)	540, 612
MaeI	CTAG	2 cut(s)	128, 257
MaeIII	GTNAC	3 cut(s)	130, 139, 337
MalI	GATC	2 cut(s)	167, 378
MboI	GATC	2 cut(s)	165, 376
MluCI	AATT	3 cut(s)	218, 296, 363
MnlI	CCTC	6 cut(s)	101, 213, 275, 314, 427, 540
MseI	TTAA	4 cut(s)	98, 216, 300, 665
MslI	CAYNNNNRTG	2 cut(s)	485, 537
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	10, 74, 398, 593
NdeII	GATC	2 cut(s)	165, 376
NlaIII	CATG	3 cut(s)	240, 271, 484
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	92, 607
PkrI	GCNGC	3 cut(s)	67, 179, 263
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	479, 543
RsaNI	GTAC	2 cut(s)	478, 542
RseI	CAYNNNNRTG	2 cut(s)	485, 537
SaqAI	TTAA	4 cut(s)	98, 216, 300, 665
SatI	GCNGC	3 cut(s)	66, 178, 262
Sau3AI	GATC	2 cut(s)	165, 376
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	8 cut(s)	9, 46, 70, 75, 151, 227, 306, 312
SfaNI	GCATC	2 cut(s)	540, 612
SmiMI	CAYNNNNRTG	2 cut(s)	485, 537
Sse9I	AATT	3 cut(s)	218, 296, 363
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	2 cut(s)	128, 257
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	396, 600
TaqI	TCGA	1 cut(s)	620
TasI	AATT	3 cut(s)	218, 296, 363
TatI	WGTACW	2 cut(s)	477, 541
TfiI	GAWTC	2 cut(s)	92, 607
Tru1I	TTAA	4 cut(s)	98, 216, 300, 665
Tru9I	TTAA	4 cut(s)	98, 216, 300, 665
TscAI	CASTG	2 cut(s)	399, 420
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	65, 177, 261
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	28, 161, 456
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	399, 420
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	2 cut(s)	128, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.