Rmu_sc0003017.1_g000007

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003017.1
OG0013503
Physical Location & Seq
Reverse (-)
45825 .. 48237
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003017.1_g000007.1.cds

Sequence Viewer

Length: 1050 bp
atgttgagctccacttgcgctcactcgcttcttcgccgccctttcctcccctcccctatccccagagctagggttccgacccgacccgggggtttgtatccaatttcgcgcagtttaaggatctccgaatctcattccaggcctttcaacactggatggacgaaaatttcatgctttaggcaagaggagatatcttcagaaaccccgaaagctgagtatattggacacttggtgccggaggaagtagtcaagccggaatttgatggttcgaaggaggtgaaaagggactggggattaactcttaaagaggctgcagatacagtgtttagggcaataggcagtcggtggagtgtaccgtggacagcagaaaccatattgcaggttatgctactctgggttgttgctttctggttcataggttcttggatggttccatttgcagctcacctggctggtttcaacagggaatcattaacatttagaggccaagccttattcagcctagtgactgatgtaactgaaggtcttgctggcattatgatccttcatcgctgcttatctcgtttccgtccacttcctcctgattggtttaaatttagcttgaaaggaacatggcagatagatgttgtgctaggctgcctcatgtttccctttgtcaatcggctatcgcaatttaacctcaacctattaccactcttgccgtccacccctgttacgatatcaagtgttgagcaatcaattttggcgcgtgatccgatagcaatggcactgtatgcaatagtagtttcagtgtgtgcgcccgtgtgggaggagatagtctttaggggtttcctactcccttcattgaccaagtacatgcccgtgtggtgtgcaatattggttagtgcagttgtctttgctttagcacacttcaatgtacagaggatgctaccacttgttttccttggggtggtgatgggtgctatatttgcacggtcaaggaatctattaccatcgatgctcttgcacagcctttggaatggctttgtatttttagacttaatgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

349

Amino Acids

39.38

Weight (kDa)

9.5

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 2 cut(s) 109, 748
AciI CCGC 1 cut(s) 37
AclWI GGATC 3 cut(s) 128, 535, 746
AcsI RAATTY 3 cut(s) 165, 257, 593
AcuI CTGAAG 2 cut(s) 180, 540
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 3 cut(s) 354, 854, 918
AfiI CCNNNNNNNGG 4 cut(s) 69, 87, 88, 949
AgsI TTSAA 4 cut(s) 148, 460, 604, 913
AjnI CCWGG 2 cut(s) 137, 447
AluBI AGCT 5 cut(s) 9, 68, 212, 443, 600
AluI AGCT 5 cut(s) 9, 68, 212, 443, 600
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 3 cut(s) 128, 535, 746
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 2 cut(s) 140, 484
ApeKI GCWGC 4 cut(s) 311, 440, 552, 636
ApoI RAATTY 3 cut(s) 165, 257, 593
AspLEI GCGC 4 cut(s) 20, 111, 748, 799
AsuC2I CCSGG 2 cut(s) 87, 88
AsuHPI GGTGA 3 cut(s) 289, 437, 964
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 298, 452, 539, 623
BccI CCATC 5 cut(s) 150, 257, 421, 949, 1000
BceAI ACGGC 1 cut(s) 685
BcgI CGANNNNNNTGC 2 cut(s) 985, 1019
BciT130I CCWGG 2 cut(s) 139, 449
BciVI GTATCC 1 cut(s) 108
BcnI CCSGG 2 cut(s) 87, 88
BfaI CTAG 3 cut(s) 69, 503, 632
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 370
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 5 cut(s) 37, 312, 441, 553, 637
BlsI GCNGC 5 cut(s) 38, 313, 442, 554, 638
Bme1390I CCNGG 4 cut(s) 87, 88, 139, 449
BmeT110I CYCGRG 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 75, 234, 432
BmrFI CCNGG 4 cut(s) 87, 88, 139, 449
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 915, 987
BmuI ACTGGG 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 87, 88
Bsa29I ATCGAT 1 cut(s) 995
BsaJI CCNNGG 4 cut(s) 86, 87, 356, 943
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 87, 88, 949
Bse1I ACTGG 2 cut(s) 157, 293
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 2 cut(s) 139, 449
BseCI ATCGAT 1 cut(s) 995
BseDI CCNNGG 4 cut(s) 86, 87, 356, 943
BseGI GGATG 3 cut(s) 161, 432, 930
BseLI CCNNNNNNNGG 4 cut(s) 69, 87, 88, 949
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 157, 293
BseRI GAGGAG 2 cut(s) 200, 824
BseXI GCAGC 4 cut(s) 298, 452, 539, 623
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 2 cut(s) 109, 748
BshFI GGCC 2 cut(s) 142, 486
BshNI GGYRCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 3 cut(s) 87, 236, 254
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 69, 87, 88, 949
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 142, 486
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 3 cut(s) 120, 540, 751
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 142, 486
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 995
BspFNI CGCG 2 cut(s) 109, 748
BspLI GGNNCC 3 cut(s) 75, 234, 432
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 3 cut(s) 128, 535, 746
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 2 cut(s) 157, 293
BssECI CCNNGG 4 cut(s) 86, 87, 356, 943
BssMI GATC 3 cut(s) 120, 540, 751
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 2 cut(s) 139, 449
Bst4CI ACNGT 4 cut(s) 322, 357, 771, 975
BstAPI GCANNNNNTGC 2 cut(s) 385, 773
BstAUI TGTACA 1 cut(s) 916
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 161, 432, 930
BstFNI CGCG 2 cut(s) 109, 748
BstHHI GCGC 4 cut(s) 20, 111, 748, 799
BstKTI GATC 3 cut(s) 123, 543, 754
BstMBI GATC 3 cut(s) 120, 540, 751
BstMWI GCNNNNNNNGC 5 cut(s) 15, 385, 449, 773, 968
BstNI CCWGG 2 cut(s) 139, 449
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 4 cut(s) 85, 86, 137, 447
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 2 cut(s) 109, 748
BstV1I GCAGC 4 cut(s) 298, 452, 539, 623
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 995
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 142, 486
BsuTUI ATCGAT 1 cut(s) 995
BtgI CCRYGG 1 cut(s) 356
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 3 cut(s) 161, 432, 930
BtsIMutI CAGTG 4 cut(s) 150, 327, 767, 795
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 532
CfoI GCGC 4 cut(s) 20, 111, 748, 799
Cfr9I CCCGGG 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 995
Csp6I GTAC 3 cut(s) 353, 853, 917
CviAII CATG 4 cut(s) 171, 612, 643, 856
CviQI GTAC 3 cut(s) 353, 853, 917
DdeI CTNAG 1 cut(s) 213
DpnI GATC 3 cut(s) 122, 542, 753
DpnII GATC 3 cut(s) 120, 540, 751
DraI TTTAAA 1 cut(s) 592
DraIII CACNNNGTG 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 943
Eco147I AGGCCT 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 11
Eco32I GATATC 2 cut(s) 192, 720
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 180, 540
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 137, 447
EcoRV GATATC 2 cut(s) 192, 720
EcoT14I CCWWGG 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 943
FaeI CATG 4 cut(s) 174, 615, 646, 859
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 170, 611, 642, 855
Fnu4HI GCNGC 5 cut(s) 37, 312, 441, 553, 637
FokI GGATG 3 cut(s) 168, 439, 937
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 5 cut(s) 37, 312, 441, 553, 637
FspBI CTAG 3 cut(s) 69, 503, 632
GlaI GCGC 4 cut(s) 19, 110, 747, 798
GluI GCNGC 5 cut(s) 37, 312, 441, 553, 637
HaeIII GGCC 2 cut(s) 142, 486
HapII CCGG 3 cut(s) 87, 236, 254
HhaI GCGC 4 cut(s) 20, 111, 748, 799
Hin1II CATG 4 cut(s) 174, 615, 646, 859
Hin6I GCGC 4 cut(s) 18, 109, 746, 797
HinP1I GCGC 4 cut(s) 18, 109, 746, 797
HinfI GANTC 3 cut(s) 128, 467, 982
HpaII CCGG 3 cut(s) 87, 236, 254
HphI GGTGA 3 cut(s) 289, 437, 964
Hpy166II GTNNAC 4 cut(s) 353, 360, 572, 705
Hpy188I TCNGA 4 cut(s) 78, 127, 199, 756
Hpy188III TCNNGA 1 cut(s) 581
Hpy8I GTNNAC 4 cut(s) 353, 360, 572, 705
HpyAV CCTTC 4 cut(s) 265, 515, 554, 849
HpyCH4III ACNGT 4 cut(s) 322, 357, 771, 975
HpyCH4V TGCA 8 cut(s) 314, 379, 440, 776, 872, 887, 971, 1006
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 385, 449, 773, 968
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 4 cut(s) 174, 615, 646, 859
HspAI GCGC 4 cut(s) 18, 109, 746, 797
Kzo9I GATC 3 cut(s) 120, 540, 751
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 4 cut(s) 298, 452, 539, 623
LweI GCATC 2 cut(s) 915, 987
MaeI CTAG 3 cut(s) 69, 503, 632
MaeIII GTNAC 3 cut(s) 505, 514, 712
MalI GATC 3 cut(s) 122, 542, 753
MboI GATC 3 cut(s) 120, 540, 751
MboII GAAGA 2 cut(s) 23, 186
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 102, 165, 257, 593, 671, 738
MmeI TCCRAC 1 cut(s) 101
MseI TTAA 7 cut(s) 116, 296, 303, 473, 591, 675, 1040
MslI CAYNNNNRTG 2 cut(s) 860, 912
MspI CCGG 3 cut(s) 87, 236, 254
MspR9I CCNGG 4 cut(s) 87, 88, 139, 449
MvaI CCWGG 2 cut(s) 139, 449
MvnI CGCG 2 cut(s) 109, 748
MwoI GCNNNNNNNGC 5 cut(s) 15, 385, 449, 773, 968
NciI CCSGG 2 cut(s) 87, 88
NdeII GATC 3 cut(s) 120, 540, 751
NlaIII CATG 4 cut(s) 174, 615, 646, 859
NlaIV GGNNCC 3 cut(s) 75, 234, 432
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 1 cut(s) 859
NspV TTCGAA 1 cut(s) 269
PceI AGGCCT 1 cut(s) 142
PfeI GAWTC 3 cut(s) 128, 467, 982
PkrI GCNGC 5 cut(s) 38, 313, 442, 554, 638
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 137, 447
PspGI CCWGG 2 cut(s) 137, 447
PspN4I GGNNCC 3 cut(s) 75, 234, 432
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 3 cut(s) 354, 854, 918
RsaNI GTAC 3 cut(s) 353, 853, 917
RseI CAYNNNNRTG 2 cut(s) 860, 912
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 7 cut(s) 116, 296, 303, 473, 591, 675, 1040
SatI GCNGC 5 cut(s) 37, 312, 441, 553, 637
Sau3AI GATC 3 cut(s) 120, 540, 751
ScrFI CCNGG 4 cut(s) 87, 88, 139, 449
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 2 cut(s) 915, 987
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 88
SmiMI CAYNNNNRTG 2 cut(s) 860, 912
Sse9I AATT 6 cut(s) 102, 165, 257, 593, 671, 738
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 1 cut(s) 37
SspI AATATT 1 cut(s) 876
SspMI CTAG 3 cut(s) 69, 503, 632
SstI GAGCTC 1 cut(s) 11
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 4 cut(s) 85, 86, 137, 447
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 4 cut(s) 322, 357, 771, 975
TaqI TCGA 2 cut(s) 269, 995
TasI AATT 6 cut(s) 102, 165, 257, 593, 671, 738
TatI WGTACW 2 cut(s) 852, 916
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 3 cut(s) 128, 467, 982
Tru1I TTAA 7 cut(s) 116, 296, 303, 473, 591, 675, 1040
Tru9I TTAA 7 cut(s) 116, 296, 303, 473, 591, 675, 1040
TscAI CASTG 4 cut(s) 157, 327, 774, 795
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 4 cut(s) 311, 440, 552, 636
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 159, 403, 536, 831
TspGWI ACGGA 1 cut(s) 557
TspMI CCCGGG 1 cut(s) 86
TspRI CASTG 4 cut(s) 157, 327, 774, 795
XapI RAATTY 3 cut(s) 165, 257, 593
XceI RCATGY 1 cut(s) 859
XmaI CCCGGG 1 cut(s) 86
XspI CTAG 3 cut(s) 69, 503, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.