Rh7DG157600

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013503
Physical Location & Seq
Forward (+)
13661889 .. 13662554
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG157600.1

Sequence Viewer

Length: 666 bp
ATGCTACTCTGGGTTGTTGCTTTCTGGTTCATAGGTTCTTGGATGGTTCCATTTGCAGCTCACCTGGCTGGTTTCAACAGGGAATCATTAACATTTAGAGGCCAAGCCTTATTCAGCCTAGTGACTGATGTAACTGAAGGTCTTGCTGGCATTATGATCCTTCATCGCTGCTTATCTCGTTTCCGTCCACTTCCTCCTGATTGGTTTAAATTTAGCTTGAAAGGAACATGGCAGATAGATGTTGTGCTAGGCTGCCTCATGTTTCCCTTTGTCAATCGGCTATCGCAATTTAACCTCAACCTATTACCACTCTTGCCGTCCACCCCTGTTACGATATCAAGTGTTGAGCAATCAATTTTGGCGCGTGATCCGATAGCAATGGCACTGTATGCAATAGTAGTTTCAGTGTGTGCGCCCGTGTGGGAGGAGATAGTCTTTAGGGGTTTCCTACTCCCTTCATTGACCAAGTACATGCCCGTGTGGTGTGCAATATTGGTTAGTGCAGTTGTCTTTGCTTTAGCACACTTCAATGTACAGAGGATGCTACCACTTGTTTTCCTTGGGGTGGTGATGGGTGCTATATTTGCACGGTCAAGGAATCTATTACCATCGATGCTCTTGCACAGCCTTTGGAATGGCTTTGTATTTTTAGACTTAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

221

Amino Acids

24.94

Weight (kDa)

9.38

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 127 - 213 5.7e-24 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 364
AclWI GGATC 2 cut(s) 151, 362
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 470, 534
AfiI CCNNNNNNNGG 1 cut(s) 565
AgsI TTSAA 3 cut(s) 76, 220, 529
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 59, 216
AluI AGCT 2 cut(s) 59, 216
AlwI GGATC 2 cut(s) 151, 362
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 3 cut(s) 56, 168, 252
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 2 cut(s) 364, 415
AsuHPI GGTGA 2 cut(s) 53, 580
BbvI GCAGC 3 cut(s) 68, 155, 239
BccI CCATC 3 cut(s) 37, 565, 616
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 1 cut(s) 65
BfaI CTAG 2 cut(s) 119, 248
BisI GCNGC 3 cut(s) 57, 169, 253
BlsI GCNGC 3 cut(s) 58, 170, 254
Bme1390I CCNGG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 2 cut(s) 531, 603
Bsa29I ATCGAT 1 cut(s) 611
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 565
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 65
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 2 cut(s) 48, 546
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMI GCAATG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 68, 155, 239
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 565
BsnI GGCC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 2 cut(s) 156, 367
BspANI GGCC 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 151, 362
BsrDI GCAATG 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 2 cut(s) 156, 367
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 387, 591
BstAPI GCANNNNNTGC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 2 cut(s) 48, 546
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 2 cut(s) 364, 415
BstKTI GATC 2 cut(s) 159, 370
BstMBI GATC 2 cut(s) 156, 367
BstMWI GCNNNNNNNGC 3 cut(s) 65, 389, 584
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 68, 155, 239
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 611
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 48, 546
BtsIMutI CAGTG 2 cut(s) 383, 411
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 364, 415
ClaI ATCGAT 1 cut(s) 611
Csp6I GTAC 2 cut(s) 469, 533
CviAII CATG 3 cut(s) 228, 259, 472
CviQI GTAC 2 cut(s) 469, 533
DpnI GATC 2 cut(s) 158, 369
DpnII GATC 2 cut(s) 156, 367
DraI TTTAAA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 559
Eco32I GATATC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 63
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 3 cut(s) 231, 262, 475
FaiI YATR 7 cut(s) 32, 155, 229, 260, 390, 473, 581
FatI CATG 3 cut(s) 227, 258, 471
Fnu4HI GCNGC 3 cut(s) 57, 169, 253
FokI GGATG 2 cut(s) 55, 553
Fsp4HI GCNGC 3 cut(s) 57, 169, 253
FspBI CTAG 2 cut(s) 119, 248
GlaI GCGC 2 cut(s) 363, 414
GluI GCNGC 3 cut(s) 57, 169, 253
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 2 cut(s) 364, 415
Hin1II CATG 3 cut(s) 231, 262, 475
Hin6I GCGC 2 cut(s) 362, 413
HinP1I GCGC 2 cut(s) 362, 413
HinfI GANTC 2 cut(s) 83, 598
HphI GGTGA 2 cut(s) 53, 580
Hpy166II GTNNAC 2 cut(s) 188, 321
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 188, 321
HpyAV CCTTC 3 cut(s) 131, 170, 465
HpyCH4III ACNGT 2 cut(s) 387, 591
HpyCH4V TGCA 6 cut(s) 56, 392, 488, 503, 587, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 389, 584
Hsp92II CATG 3 cut(s) 231, 262, 475
HspAI GCGC 2 cut(s) 362, 413
Kzo9I GATC 2 cut(s) 156, 367
LpnPI CCDG 8 cut(s) 10, 50, 54, 64, 77, 132, 210, 339
Lsp1109I GCAGC 3 cut(s) 68, 155, 239
LweI GCATC 2 cut(s) 531, 603
MaeI CTAG 2 cut(s) 119, 248
MaeIII GTNAC 3 cut(s) 121, 130, 328
MalI GATC 2 cut(s) 158, 369
MboI GATC 2 cut(s) 156, 367
MluCI AATT 3 cut(s) 209, 287, 354
MnlI CCTC 6 cut(s) 92, 204, 266, 305, 418, 531
MseI TTAA 4 cut(s) 89, 207, 291, 656
MslI CAYNNNNRTG 2 cut(s) 476, 528
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 65, 389, 584
NdeII GATC 2 cut(s) 156, 367
NlaIII CATG 3 cut(s) 231, 262, 475
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 475
PfeI GAWTC 2 cut(s) 83, 598
PkrI GCNGC 3 cut(s) 58, 170, 254
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 48
RsaI GTAC 2 cut(s) 470, 534
RsaNI GTAC 2 cut(s) 469, 533
RseI CAYNNNNRTG 2 cut(s) 476, 528
SaqAI TTAA 4 cut(s) 89, 207, 291, 656
SatI GCNGC 3 cut(s) 57, 169, 253
Sau3AI GATC 2 cut(s) 156, 367
ScrFI CCNGG 1 cut(s) 65
SetI ASST 7 cut(s) 37, 61, 66, 142, 218, 297, 303
SfaNI GCATC 2 cut(s) 531, 603
SmiMI CAYNNNNRTG 2 cut(s) 476, 528
Sse9I AATT 3 cut(s) 209, 287, 354
SspI AATATT 1 cut(s) 492
SspMI CTAG 2 cut(s) 119, 248
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 2 cut(s) 387, 591
TaqI TCGA 1 cut(s) 611
TasI AATT 3 cut(s) 209, 287, 354
TatI WGTACW 2 cut(s) 468, 532
TfiI GAWTC 2 cut(s) 83, 598
Tru1I TTAA 4 cut(s) 89, 207, 291, 656
Tru9I TTAA 4 cut(s) 89, 207, 291, 656
TscAI CASTG 2 cut(s) 390, 411
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 56, 168, 252
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 19, 152, 447
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 390, 411
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 475
XspI CTAG 2 cut(s) 119, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.