Prupe.5G110300_v2.0.a1

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013503
Physical Location & Seq
Reverse (-)
11490720 .. 11494441
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G110300.1

Sequence Viewer

Length: 1050 bp
ATGTTGAGCTCCACTTGCTCTCACTCTCTTATTCGCCGCCCTTTCCTTCAATCACCTGCCCCAAAAACTAGGGTTTCGACCCGACCCGGAGCTCTATATCCAATTTCCCGGAGTTTTAGGATCTTCGAATCTCATTCCAGGCCTTCCAGCACGAGATGGACAAGAATTTCATGCTTTAGACAAGAGAATTCTTCATCAGAAACCCCGAAAGCTGATTATATTGGACACTTGGTGCCTGAGGAAGTAGTTAAGTCCGAATTCGATGATTCTAAGGTGGTTAAAAAGGATTGGGGATTCACTCTTCGAGAGGCTGCAGATGCAGTGTTTAGGGCGATTGGGAGTCGGTGGAGTGTGCCATGGACAGCAGAGACCATAATGCAGGTCATGCTACTATGGGTTGTAGCTTTCTGGTTCATAGGTTCTTGGATGGTTCCATTTGCAGCTCACCTGGCAGGTTTCAGCAGGGAATCATTAACATTTAGAGGACAAGCCTTATTTAGCCTGGTGACTGATGTAACTGAGGGTCTTGCTGGAATTGTGATCCTTTATCGCTGCTTATCTCGTTTCCGTCCGCTTCCCCCAGATTGGTTCAAATTTAGCTTGAAAGGATCCTGGCAGTTGGATGTTGCTCTTGGATGCCTTATGTTTCCCCTGGTCAATCGGCTCTCACAGTTCAACCTCAACCTATTACCTCTTTTGCCTTCCACCCCTGTCACAATATCAAGTGTTGAGCAATCAATTTTGGCACGTGATCCAGTGGCAATGGCACTGTATGCGGTAGTAGTTTCGGTGTGTGCTCCTGTATGGGAGGAGATAGTGTTTAGGGGTTTCCTACTTCCTTCCTTGACCAAGTACATGCCTGTATGGTCTGCAATACTGGTGAGCTCGGTTGTATTTGCTTTAGCGCATTTTAATGTACAGAGGATGCTACCACTTATTTTTCTTGGGGTGGTGATGGGTGTTATATTTGCACGGTCAAGGAACCTATTACCATCAATGCTCTTGCATAGCCTTTGGAATGGCTTTGTATTTTTGGATTTAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

350

Amino Acids

39.41

Weight (kDa)

9.77

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 64
Acc36I ACCTGC 3 cut(s) 64, 370, 443
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 3 cut(s) 37, 572, 776
AclWI GGATC 5 cut(s) 128, 535, 603, 616, 746
AcsI RAATTY 4 cut(s) 165, 187, 257, 593
AcvI CACGTG 1 cut(s) 749
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 2 cut(s) 854, 918
AfiI CCNNNNNNNGG 1 cut(s) 585
AgsI TTSAA 4 cut(s) 50, 592, 604, 676
AjnI CCWGG 5 cut(s) 137, 447, 501, 611, 651
AluBI AGCT 7 cut(s) 9, 92, 212, 404, 443, 600, 885
AluI AGCT 7 cut(s) 9, 92, 212, 404, 443, 600, 885
Alw21I GWGCWC 4 cut(s) 11, 94, 799, 887
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 5 cut(s) 128, 535, 603, 616, 746
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 311, 440, 552
ApoI RAATTY 4 cut(s) 165, 187, 257, 593
AspLEI GCGC 1 cut(s) 907
AsuC2I CCSGG 2 cut(s) 87, 109
AsuHPI GGTGA 5 cut(s) 45, 437, 517, 892, 964
AsuII TTCGAA 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 237
BamHI GGATCC 1 cut(s) 608
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 3 cut(s) 11, 94, 887
BauI CACGAG 1 cut(s) 151
BbrPI CACGTG 1 cut(s) 749
Bbv12I GWGCWC 4 cut(s) 11, 94, 799, 887
BbvI GCAGC 3 cut(s) 298, 452, 539
BccI CCATC 4 cut(s) 150, 421, 949, 1000
BciT130I CCWGG 5 cut(s) 139, 449, 503, 613, 653
BcnI CCSGG 2 cut(s) 87, 109
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 3 cut(s) 64, 370, 443
BisI GCNGC 4 cut(s) 37, 312, 441, 553
BlsI GCNGC 4 cut(s) 38, 313, 442, 554
Bme1390I CCNGG 7 cut(s) 87, 109, 139, 449, 503, 613, 653
BmiI GGNNCC 4 cut(s) 234, 432, 610, 983
BmrFI CCNGG 7 cut(s) 87, 109, 139, 449, 503, 613, 653
BmsI GCATC 3 cut(s) 307, 626, 915
Bpu14I TTCGAA 1 cut(s) 126
BpuMI CCSGG 2 cut(s) 87, 109
BsaAI YACGTR 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 356, 651
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 585
Bse1I ACTGG 2 cut(s) 755, 882
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 5 cut(s) 139, 449, 503, 613, 653
BseDI CCNNGG 2 cut(s) 356, 651
BseGI GGATG 4 cut(s) 432, 628, 641, 930
BseLI CCNNNNNNNGG 1 cut(s) 585
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 228, 510
BseNI ACTGG 2 cut(s) 755, 882
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 3 cut(s) 298, 452, 539
BshFI GGCC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 4 cut(s) 11, 94, 799, 887
BsiSI CCGG 2 cut(s) 87, 109
BslI CCNNNNNNNGG 1 cut(s) 585
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 1 cut(s) 142
Bso31I GGTCTC 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 4 cut(s) 11, 94, 799, 887
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 4 cut(s) 120, 540, 608, 751
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 3 cut(s) 37, 572, 776
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 2 cut(s) 229, 511
BspLI GGNNCC 4 cut(s) 234, 432, 610, 983
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 3 cut(s) 64, 370, 443
BspPI GGATC 5 cut(s) 128, 535, 603, 616, 746
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 2 cut(s) 755, 882
BssECI CCNNGG 2 cut(s) 356, 651
BssMI GATC 4 cut(s) 120, 540, 608, 751
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 5 cut(s) 139, 449, 503, 613, 653
Bst4CI ACNGT 3 cut(s) 672, 771, 975
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 2 cut(s) 385, 773
BstAUI TGTACA 1 cut(s) 916
BstBAI YACGTR 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 237, 270, 519
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 4 cut(s) 432, 628, 641, 930
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 4 cut(s) 123, 543, 611, 754
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 4 cut(s) 120, 540, 608, 751
BstMWI GCNNNNNNNGC 5 cut(s) 15, 317, 385, 449, 773
BstNI CCWGG 5 cut(s) 139, 449, 503, 613, 653
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 7 cut(s) 85, 107, 137, 447, 501, 611, 651
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 298, 452, 539
BstX2I RGATCY 2 cut(s) 120, 608
BstYI RGATCY 2 cut(s) 120, 608
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 432, 628, 641, 930
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 327, 762, 767
BveI ACCTGC 3 cut(s) 64, 370, 443
CfoI GCGC 1 cut(s) 907
Csp6I GTAC 2 cut(s) 853, 917
CviAII CATG 4 cut(s) 171, 357, 385, 856
CviQI GTAC 2 cut(s) 853, 917
DdeI CTNAG 3 cut(s) 237, 270, 519
DpnI GATC 4 cut(s) 122, 542, 610, 753
DpnII GATC 4 cut(s) 120, 540, 608, 751
DraIII CACNNNGTG 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 3 cut(s) 9, 92, 885
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 142
Eco24I GRGCYC 3 cut(s) 11, 94, 887
Eco31I GGTCTC 1 cut(s) 362
Eco53kI GAGCTC 3 cut(s) 9, 92, 885
Eco72I CACGTG 1 cut(s) 749
Eco81I CCTNAGG 1 cut(s) 237
EcoICRI GAGCTC 3 cut(s) 9, 92, 885
EcoRI GAATTC 2 cut(s) 187, 257
EcoRII CCWGG 5 cut(s) 137, 447, 501, 611, 651
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 3 cut(s) 11, 94, 887
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 174, 360, 388, 859
FatI CATG 4 cut(s) 170, 356, 384, 855
Fnu4HI GCNGC 4 cut(s) 37, 312, 441, 553
FokI GGATG 4 cut(s) 439, 635, 648, 937
FriOI GRGCYC 3 cut(s) 11, 94, 887
Fsp4HI GCNGC 4 cut(s) 37, 312, 441, 553
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 906
GluI GCNGC 4 cut(s) 37, 312, 441, 553
HaeIII GGCC 1 cut(s) 142
HapII CCGG 2 cut(s) 87, 109
HhaI GCGC 1 cut(s) 907
Hin1II CATG 4 cut(s) 174, 360, 388, 859
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HinfI GANTC 5 cut(s) 128, 266, 294, 340, 467
HpaII CCGG 2 cut(s) 87, 109
HphI GGTGA 5 cut(s) 45, 437, 517, 892, 964
Hpy188I TCNGA 2 cut(s) 199, 256
Hpy188III TCNNGA 1 cut(s) 305
HpyAV CCTTC 4 cut(s) 56, 153, 711, 849
HpyCH4III ACNGT 3 cut(s) 672, 771, 975
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 7 cut(s) 314, 320, 379, 440, 872, 971, 1006
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 317, 385, 449, 773
HpyF3I CTNAG 3 cut(s) 237, 270, 519
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 4 cut(s) 174, 360, 388, 859
HspAI GCGC 1 cut(s) 905
Kzo9I GATC 4 cut(s) 120, 540, 608, 751
LmnI GCTCC 3 cut(s) 14, 89, 802
Lsp1109I GCAGC 3 cut(s) 298, 452, 539
LweI GCATC 3 cut(s) 307, 626, 915
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 3 cut(s) 505, 514, 712
MalI GATC 4 cut(s) 122, 542, 610, 753
MboI GATC 4 cut(s) 120, 540, 608, 751
MboII GAAGA 3 cut(s) 115, 183, 293
MflI RGATCY 2 cut(s) 120, 608
MhlI GDGCHC 4 cut(s) 11, 94, 799, 887
MluCI AATT 7 cut(s) 102, 165, 187, 257, 534, 593, 738
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 600
MnlI CCTC 8 cut(s) 232, 301, 476, 514, 689, 702, 802, 915
MseI TTAA 5 cut(s) 249, 279, 473, 912, 1040
MslI CAYNNNNRTG 1 cut(s) 912
MspI CCGG 2 cut(s) 87, 109
MspR9I CCNGG 7 cut(s) 87, 109, 139, 449, 503, 613, 653
MvaI CCWGG 5 cut(s) 139, 449, 503, 613, 653
MwoI GCNNNNNNNGC 5 cut(s) 15, 317, 385, 449, 773
NciI CCSGG 2 cut(s) 87, 109
NcoI CCATGG 1 cut(s) 356
NdeII GATC 4 cut(s) 120, 540, 608, 751
NlaIII CATG 4 cut(s) 174, 360, 388, 859
NlaIV GGNNCC 4 cut(s) 234, 432, 610, 983
NmuCI GTSAC 2 cut(s) 505, 712
NspI RCATGY 1 cut(s) 859
NspV TTCGAA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 64
PceI AGGCCT 1 cut(s) 142
PfeI GAWTC 4 cut(s) 128, 266, 294, 467
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 4 cut(s) 38, 313, 442, 554
PleI GAGTC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 749
PmlI CACGTG 1 cut(s) 749
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 749
Psp124BI GAGCTC 3 cut(s) 11, 94, 887
Psp6I CCWGG 5 cut(s) 137, 447, 501, 611, 651
PspCI CACGTG 1 cut(s) 749
PspGI CCWGG 5 cut(s) 137, 447, 501, 611, 651
PspN4I GGNNCC 4 cut(s) 234, 432, 610, 983
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 2 cut(s) 120, 608
RsaI GTAC 2 cut(s) 854, 918
RsaNI GTAC 2 cut(s) 853, 917
RseI CAYNNNNRTG 1 cut(s) 912
SacI GAGCTC 3 cut(s) 11, 94, 887
SaqAI TTAA 5 cut(s) 249, 279, 473, 912, 1040
SatI GCNGC 4 cut(s) 37, 312, 441, 553
Sau3AI GATC 4 cut(s) 120, 540, 608, 751
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 7 cut(s) 87, 109, 139, 449, 503, 613, 653
SduI GDGCHC 4 cut(s) 11, 94, 799, 887
SfaNI GCATC 3 cut(s) 307, 626, 915
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 912
Sse9I AATT 7 cut(s) 102, 165, 187, 257, 534, 593, 738
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 37, 572, 776
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 3 cut(s) 11, 94, 887
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 7 cut(s) 85, 107, 137, 447, 501, 611, 651
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 3 cut(s) 672, 771, 975
TaiI ACGT 1 cut(s) 751
TaqI TCGA 4 cut(s) 77, 126, 261, 304
TasI AATT 7 cut(s) 102, 165, 187, 257, 534, 593, 738
TatI WGTACW 2 cut(s) 852, 916
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 4 cut(s) 128, 266, 294, 467
Tru1I TTAA 5 cut(s) 249, 279, 473, 912, 1040
Tru9I TTAA 5 cut(s) 249, 279, 473, 912, 1040
TscAI CASTG 3 cut(s) 327, 762, 774
TseFI GTSAC 2 cut(s) 505, 712
TseI GCWGC 3 cut(s) 311, 440, 552
Tsp45I GTSAC 2 cut(s) 505, 712
TspDTI ATGAA 3 cut(s) 159, 183, 403
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 3 cut(s) 327, 762, 774
XapI RAATTY 4 cut(s) 165, 187, 257, 593
XceI RCATGY 1 cut(s) 859
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.