MD14G1115700.v1.1

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013503
Physical Location & Seq
Reverse (-)
18815729 .. 18818623
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1115700.v1.1.491

Sequence Viewer

Length: 909 bp
ATGGACAAATTTTGGTGGACTAGAATTTCATGCTTTAGGCAAGAGGAGTTCTCTTCAGATACACCGAAATCGGAATATATTGAACACTTGGTGCCCGAGGAAGTTGTCAAGTCCGAGTTTGATGATTCTAAGGTGGTTAAAAGGGATTGGGGAGTAGCTCTTCGAGAGGCTGCAGATGCAGTGTCTAGGGCAATTGGGAGTCGTTGGAGTGTGCCTTGGTCAGCAGAGACCATATTGCAGGTCATGCTACTATGGGTTGCTGCTTTTTGCTTCATAGGTTCTTGGATGGTTCCATTTGCAGCTCACATGGCAGGTTTCAGCAGGGAATCATTAACAAATAGAGGACAAGCCTTATTTAGCCTGGTAACTGATGTAACTGAAGGTCTTGTTGGAATTACGATAATTTGTCGCTGCTTATCTCGTTTTCGCCCTCTTCCTCCGGATTGGTTTAAATTTAGCTTGAAAGGGACATGGCAGTTGGATGTTGCTCTTGGATGCCTTATGTTTCCCCTGGTCAATCGGCTCTCACAGTTGAACCTTAGTCTGCTCCCTCTTTTGCCGTCCACCCCTGTCACAATATCAAGTGTTGAGCAAGCAATTATGGCACGTGATCCAGTGGCAATGGCAATGTATGCAGTGGTAGTTTCAGTGTGTGCTCCCATGTGGGAGGAGATACTCTTCAGGGGTTTCTTGCTGCCTTCCTTAACCAAGTACATGCCTGTATGGTCTGCAGTATTGGTGAGCTCGGTTGTATTTGCTTTAGCACATTGGAATGTACAGAGGATTCTACCACTTATTTTCCTTGGGGTGGTGATGGGCGTTGTATTCGCACGGTCAAGGAATCTATTACCATCGATGCTCTTGCACAGTCTTTGGAATGGCTTCGTATTTTTAGATTTAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

303

Amino Acids

34.13

Weight (kDa)

7.62

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 209 - 294 6e-23 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60750
fragaria_vesca FvH4_5g03580
malus_domestica MD06G1095700.v1.1 MD14G1115700.v1.1
prunus_persica Prupe.5G110300_v2.0.a1 Prupe.5G110300_v2.0.a1
pyrus_communis pycom06g09200
rosa_chinensis RchiOBHm_Chr7g0196131
rosa_laevigata RLG00000004061
rosa_multiflora Rmu_sc0003017.1_g000007 Rmu_sc0003061.1_g000001
rosa_roxburghii Rroxscaffold_3G00259750
rosa_rugosa Rorug07G0030800
rosa_samantha Rh7AG156800 Rh7BG158500 Rh7CG162300 Rh7DG157600
rosa_wichuraiana Rw7G013390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 229, 302
AccB1I GGYRCC 1 cut(s) 91
AccIII TCCGGA 1 cut(s) 439
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 3 cut(s) 8, 24, 452
AcuI CTGAAG 3 cut(s) 39, 399, 664
AcvI CACGTG 1 cut(s) 608
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 2 cut(s) 713, 777
AfiI CCNNNNNNNGG 1 cut(s) 808
AgsI TTSAA 3 cut(s) 83, 463, 535
AjnI CCWGG 2 cut(s) 360, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 158, 302, 459, 744
AluI AGCT 4 cut(s) 158, 302, 459, 744
Alw21I GWGCWC 2 cut(s) 658, 746
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 439
ApeKI GCWGC 5 cut(s) 170, 260, 299, 411, 694
ApoI RAATTY 3 cut(s) 8, 24, 452
Asp700I GAANNNNTTC 1 cut(s) 881
AsuHPI GGTGA 2 cut(s) 751, 823
AvaI CYCGRG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 746
BbrPI CACGTG 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 658, 746
BbvI GCAGC 5 cut(s) 157, 247, 311, 398, 681
BccI CCATC 3 cut(s) 280, 808, 859
BceAI ACGGC 1 cut(s) 544
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BciT130I CCWGG 2 cut(s) 362, 512
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 21, 186
BfmI CTRYAG 2 cut(s) 171, 729
BfuAI ACCTGC 2 cut(s) 229, 302
BisI GCNGC 5 cut(s) 171, 261, 300, 412, 695
BlsI GCNGC 5 cut(s) 172, 262, 301, 413, 696
Bme1390I CCNGG 2 cut(s) 362, 512
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 93, 291
BmrFI CCNGG 2 cut(s) 362, 512
BmsI GCATC 3 cut(s) 166, 485, 846
BplI GAGNNNNNCTC 2 cut(s) 35, 67
Bsa29I ATCGAT 1 cut(s) 854
BsaAI YACGTR 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 96, 215, 510, 802
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 614
Bse3DI GCAATG 2 cut(s) 627, 633
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 2 cut(s) 362, 512
BseCI ATCGAT 1 cut(s) 854
BseDI CCNNGG 4 cut(s) 96, 215, 510, 802
BseGI GGATG 3 cut(s) 291, 487, 500
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMI GCAATG 2 cut(s) 627, 633
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 2 cut(s) 59, 683
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 5 cut(s) 157, 247, 311, 398, 681
BshNI GGYRCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 854
BsiHKAI GWGCWC 2 cut(s) 658, 746
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 481
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 96, 658, 746
Bsp13I TCCGGA 1 cut(s) 439
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 854
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 93, 291
BspMAI CTGCAG 2 cut(s) 175, 733
BspMI ACCTGC 2 cut(s) 229, 302
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 627, 633
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 4 cut(s) 96, 215, 510, 802
BssMI GATC 1 cut(s) 610
BssT1I CCWWGG 2 cut(s) 215, 802
Bst2UI CCWGG 2 cut(s) 362, 512
Bst4CI ACNGT 3 cut(s) 531, 834, 869
Bst6I CTCTTC 4 cut(s) 58, 165, 438, 683
BstAPI GCANNNNNTGC 2 cut(s) 244, 632
BstAUI TGTACA 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 129, 539
BstF5I GGATG 3 cut(s) 291, 487, 500
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 5 cut(s) 176, 244, 308, 602, 632
BstNI CCWGG 2 cut(s) 362, 512
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 360, 510
BstSFI CTRYAG 2 cut(s) 171, 729
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 5 cut(s) 157, 247, 311, 398, 681
Bsu15I ATCGAT 1 cut(s) 854
BsuTUI ATCGAT 1 cut(s) 854
BtsCI GGATG 3 cut(s) 291, 487, 500
BtsI GCAGTG 2 cut(s) 186, 642
BtsIMutI CAGTG 4 cut(s) 186, 621, 642, 654
BveI ACCTGC 2 cut(s) 229, 302
Cac8I GCNNGC 1 cut(s) 594
ClaI ATCGAT 1 cut(s) 854
Csp6I GTAC 2 cut(s) 712, 776
CviAII CATG 6 cut(s) 30, 244, 307, 471, 661, 715
CviJI RGCY 9 cut(s) 158, 170, 302, 350, 360, 459, 523, 744, 882
CviKI_1 RGCY 9 cut(s) 158, 170, 302, 350, 360, 459, 523, 744, 882
CviQI GTAC 2 cut(s) 712, 776
DdeI CTNAG 2 cut(s) 129, 539
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
DraI TTTAAA 1 cut(s) 451
DraIII CACNNNGTG 1 cut(s) 91
Eam1104I CTCTTC 4 cut(s) 58, 165, 438, 683
EarI CTCTTC 4 cut(s) 58, 165, 438, 683
Ecl136II GAGCTC 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 215, 802
Eco24I GRGCYC 1 cut(s) 746
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 744
Eco57I CTGAAG 3 cut(s) 39, 399, 664
Eco72I CACGTG 1 cut(s) 608
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 360, 510
EcoT14I CCWWGG 2 cut(s) 215, 802
EcoT38I GRGCYC 1 cut(s) 746
ErhI CCWWGG 2 cut(s) 215, 802
FaeI CATG 6 cut(s) 33, 247, 310, 474, 664, 718
FaqI GGGAC 1 cut(s) 481
FatI CATG 6 cut(s) 29, 243, 306, 470, 660, 714
Fnu4HI GCNGC 5 cut(s) 171, 261, 300, 412, 695
FokI GGATG 3 cut(s) 298, 494, 507
FriOI GRGCYC 1 cut(s) 746
Fsp4HI GCNGC 5 cut(s) 171, 261, 300, 412, 695
FspBI CTAG 2 cut(s) 21, 186
GluI GCNGC 5 cut(s) 171, 261, 300, 412, 695
HapII CCGG 1 cut(s) 440
Hin1II CATG 6 cut(s) 33, 247, 310, 474, 664, 718
HinfI GANTC 5 cut(s) 125, 199, 326, 784, 841
HpaII CCGG 1 cut(s) 440
HphI GGTGA 2 cut(s) 751, 823
Hpy166II GTNNAC 2 cut(s) 18, 564
Hpy188I TCNGA 3 cut(s) 58, 73, 115
Hpy188III TCNNGA 2 cut(s) 164, 440
Hpy8I GTNNAC 2 cut(s) 18, 564
HpyAV CCTTC 2 cut(s) 374, 708
HpyCH4III ACNGT 3 cut(s) 531, 834, 869
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 7 cut(s) 173, 179, 238, 299, 635, 731, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 244, 308, 602, 632
HpyF3I CTNAG 2 cut(s) 129, 539
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 6 cut(s) 33, 247, 310, 474, 664, 718
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 1 cut(s) 610
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 552, 661
Lsp1109I GCAGC 5 cut(s) 157, 247, 311, 398, 681
LweI GCATC 3 cut(s) 166, 485, 846
MaeI CTAG 2 cut(s) 21, 186
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 3 cut(s) 364, 373, 571
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 4 cut(s) 45, 152, 425, 670
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 3 cut(s) 96, 658, 746
MluCI AATT 7 cut(s) 8, 24, 192, 393, 402, 452, 597
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 3 cut(s) 185, 370, 459
MnlI CCTC 9 cut(s) 37, 91, 160, 335, 441, 447, 561, 661, 774
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 5 cut(s) 138, 332, 450, 704, 899
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 362, 512
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 2 cut(s) 362, 512
MwoI GCNNNNNNNGC 5 cut(s) 176, 244, 308, 602, 632
NdeII GATC 1 cut(s) 610
NlaIII CATG 6 cut(s) 33, 247, 310, 474, 664, 718
NlaIV GGNNCC 2 cut(s) 93, 291
NmuCI GTSAC 1 cut(s) 571
NspI RCATGY 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 4 cut(s) 125, 326, 784, 841
PkrI GCNGC 5 cut(s) 172, 262, 301, 413, 696
PleI GAGTC 1 cut(s) 207
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
PpsI GAGTC 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 360, 510
PspCI CACGTG 1 cut(s) 608
PspGI CCWGG 2 cut(s) 360, 510
PspN4I GGNNCC 2 cut(s) 93, 291
PstI CTGCAG 2 cut(s) 175, 733
RsaI GTAC 2 cut(s) 713, 777
RsaNI GTAC 2 cut(s) 712, 776
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 1 cut(s) 746
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 138, 332, 450, 704, 899
SatI GCNGC 5 cut(s) 171, 261, 300, 412, 695
Sau3AI GATC 1 cut(s) 610
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 362, 512
SduI GDGCHC 3 cut(s) 96, 658, 746
SfaNI GCATC 3 cut(s) 166, 485, 846
SfcI CTRYAG 2 cut(s) 171, 729
SmiMI CAYNNNNRTG 1 cut(s) 771
Sse9I AATT 7 cut(s) 8, 24, 192, 393, 402, 452, 597
SspMI CTAG 2 cut(s) 21, 186
SstI GAGCTC 1 cut(s) 746
StyD4I CCNGG 2 cut(s) 360, 510
StyI CCWWGG 2 cut(s) 215, 802
TaaI ACNGT 3 cut(s) 531, 834, 869
TaiI ACGT 1 cut(s) 610
TaqI TCGA 2 cut(s) 163, 854
TasI AATT 7 cut(s) 8, 24, 192, 393, 402, 452, 597
TatI WGTACW 2 cut(s) 711, 775
TfiI GAWTC 4 cut(s) 125, 326, 784, 841
Tru1I TTAA 5 cut(s) 138, 332, 450, 704, 899
Tru9I TTAA 5 cut(s) 138, 332, 450, 704, 899
TscAI CASTG 4 cut(s) 186, 621, 642, 654
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 5 cut(s) 170, 260, 299, 411, 694
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 2 cut(s) 18, 262
TspRI CASTG 4 cut(s) 186, 621, 642, 654
XapI RAATTY 3 cut(s) 8, 24, 452
XceI RCATGY 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 2 cut(s) 21, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.