MD06G1106400.v1.1

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015621
Physical Location & Seq
Reverse (-)
24546752 .. 24546991
240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1106400.v1.1.491

Sequence Viewer

Length: 240 bp
ATGCATCTCCCACCTGCTGCAGGGGTGGCAAAGCCGCCTCCGGCTTGCTGTAACGGTGTGCAATACCTCACCAAGTACTCAAACGGCAGGGAAGATAGGCGGGCTATATGTGGCTGCATCAAAGGTGCAGCTAATATGATGGGGTCTATTGATTTTTCTCTCATTTCTGATCTGCCTAGCAAGTGTGGTGTTTGTGTTAACCTTCCACCTATCTCAAGAAACATCGATTGTTCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

80

Amino Acids

8.32

Weight (kDa)

8.55

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 9 - 77 6.2e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04531
malus_domestica MD06G1106400.v1.1 MD06G1106500.v1.1
prunus_persica Prupe.5G118600_v2.0.a1 Prupe.5G119200_v2.0.a1 Prupe.5G119400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194911
rosa_laevigata RLG00000004158
rosa_multiflora Rmu_ssc0000157.1_g000006
rosa_roxburghii Rroxscaffold_3G00260900
rosa_rugosa Rorug07G0018700
rosa_samantha Rh7AG146700 Rh7BG147400 Rh7CG150700 Rh7DG147900
rosa_wichuraiana Rw7G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AciI CCGC 2 cut(s) 35, 100
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 17, 114, 128
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 3 cut(s) 4, 101, 140
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 100
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 4 cut(s) 18, 35, 115, 129
BlsI GCNGC 4 cut(s) 19, 36, 116, 130
BmcAI AGTACT 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 13, 126
BmuI ACTGGG 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 4, 101, 140
BsgI GTGCAG 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 225
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 2 cut(s) 35, 100
BspDI ATCGAT 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 22
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 46, 102
BstENI CCTNNNNNAGG 1 cut(s) 18
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 4, 101, 140
Bsu15I ATCGAT 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 225
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 46, 102
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 1 cut(s) 76
CviJI RGCY 5 cut(s) 34, 44, 104, 114, 131
CviKI_1 RGCY 5 cut(s) 34, 44, 104, 114, 131
CviQI GTAC 1 cut(s) 76
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 3 cut(s) 107, 109, 137
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 18, 35, 115, 129
Fsp4HI GCNGC 4 cut(s) 18, 35, 115, 129
FspBI CTAG 1 cut(s) 177
GluI GCNGC 4 cut(s) 18, 35, 115, 129
HapII CCGG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 4, 20, 61, 117, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 6, 27, 54, 73
Lsp1109I GCAGC 3 cut(s) 4, 101, 140
LweI GCATC 2 cut(s) 13, 126
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 104
MnlI CCTC 2 cut(s) 48, 77
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 19, 36, 116, 130
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 4 cut(s) 18, 35, 115, 129
Sau3AI GATC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 77
SetI ASST 6 cut(s) 16, 69, 127, 133, 204, 211
SfaNI GCATC 2 cut(s) 13, 126
SfcI CTRYAG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SsiI CCGC 2 cut(s) 35, 100
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 3 cut(s) 17, 114, 128
XagI CCTNNNNNAGG 1 cut(s) 18
XspI CTAG 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.