Rroxscaffold_3G00260900

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015621
Physical Location & Seq
Reverse (-)
55214577 .. 55214915
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260900.1

Sequence Viewer

Length: 339 bp
ATGTCTCACCTAACCAAGATCGTAGTCTTCTTGGTGATCGTACTCGTCTCCGAGTCCGCCATGGGTGCACCCGAGTGTGCGCCAATCCTTAGGACATTAGATCCCTGCCTTCCTTACCTGGTGCAGAACCCGGGCCGCGAGGACAGCCCATCCAAGGCTTGCTGCGACGGTCTCACAACACTCAGCGCGTTGCCGAATGTCAAGGATGAATGTGAGTGCATCAAGGCCACAGTGCTGTTGACGCCTTTAGATTTGCCTCGATTTGCTGCTCTCCCCAGTGTTTGTGGCACCACCTTGAAGATTCCGGCCATCTCCGGCGACATGGATTGTTCTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

112

Amino Acids

11.82

Weight (kDa)

4.72

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 13 - 100 1.2e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 26 - 109 2.7e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04531
malus_domestica MD06G1106400.v1.1 MD06G1106500.v1.1
prunus_persica Prupe.5G118600_v2.0.a1 Prupe.5G119200_v2.0.a1 Prupe.5G119400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194911
rosa_laevigata RLG00000004158
rosa_multiflora Rmu_ssc0000157.1_g000006
rosa_roxburghii Rroxscaffold_3G00260900
rosa_rugosa Rorug07G0018700
rosa_samantha Rh7AG146700 Rh7BG147400 Rh7CG150700 Rh7DG147900
rosa_wichuraiana Rw7G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 2 cut(s) 138, 188
AciI CCGC 2 cut(s) 57, 136
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 3 cut(s) 9, 52, 176
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 2 cut(s) 71, 130
AoxI GGCC 3 cut(s) 133, 225, 306
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 162, 266
AspLEI GCGC 2 cut(s) 82, 188
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 131, 132
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 2 cut(s) 71, 130
AxyI CCTNAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 149, 253
BccI CCATC 2 cut(s) 157, 317
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 2 cut(s) 131, 132
BcoDI GTCTC 3 cut(s) 9, 52, 176
BisI GCNGC 3 cut(s) 136, 163, 267
BlsI GCNGC 3 cut(s) 137, 164, 268
Bme1390I CCNGG 3 cut(s) 119, 131, 132
BmeT110I CYCGRG 2 cut(s) 71, 130
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 3 cut(s) 119, 131, 132
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 131, 132
BsaAI YACGTR 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 60, 130, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 276
Bse21I CCTNAGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 60, 130, 153
BseGI GGATG 2 cut(s) 149, 211
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 149, 253
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 138, 188
BshFI GGCC 3 cut(s) 135, 227, 308
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 2 cut(s) 71, 130
BsiSI CCGG 3 cut(s) 131, 305, 315
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 9, 52, 176
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 3 cut(s) 135, 227, 308
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 71, 130
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 18, 36, 100
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 57, 136
BspANI GGCC 3 cut(s) 135, 227, 308
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 2 cut(s) 138, 188
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 60, 130, 153
BssMI GATC 3 cut(s) 18, 36, 100
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 60, 153
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 170, 232
BstACI GRCGYC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 89, 182
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 149, 211
BstFNI CGCG 2 cut(s) 138, 188
BstHHI GCGC 2 cut(s) 82, 188
BstKTI GATC 3 cut(s) 21, 39, 103
BstMAI GTCTC 3 cut(s) 9, 52, 176
BstMBI GATC 3 cut(s) 18, 36, 100
BstMWI GCNNNNNNNGC 3 cut(s) 65, 144, 241
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 3 cut(s) 117, 129, 130
BstSLI GKGCMC 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 336
BstUI CGCG 2 cut(s) 138, 188
BstV1I GCAGC 2 cut(s) 149, 253
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 3 cut(s) 135, 227, 308
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 149, 211
BtsIMutI CAGTG 2 cut(s) 237, 283
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 2 cut(s) 82, 188
Cfr13I GGNCC 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 130
CseI GACGC 1 cut(s) 250
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 61, 322
CviJI RGCY 5 cut(s) 135, 147, 158, 227, 308
CviKI_1 RGCY 5 cut(s) 135, 147, 158, 227, 308
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 89, 182
DpnI GATC 3 cut(s) 20, 38, 102
DpnII GATC 3 cut(s) 18, 36, 100
EaeI YGGCCR 1 cut(s) 306
EciI GGCGGA 1 cut(s) 46
Eco105I TACGTA 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 60, 153
Eco31I GGTCTC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 2 cut(s) 71, 130
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 60, 153
ErhI CCWWGG 2 cut(s) 60, 153
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 64, 325
FaiI YATR 2 cut(s) 62, 323
FatI CATG 2 cut(s) 60, 321
Fnu4HI GCNGC 3 cut(s) 136, 163, 267
FokI GGATG 2 cut(s) 136, 218
Fsp4HI GCNGC 3 cut(s) 136, 163, 267
GlaI GCGC 2 cut(s) 81, 187
GluI GCNGC 3 cut(s) 136, 163, 267
HaeIII GGCC 3 cut(s) 135, 227, 308
HapII CCGG 3 cut(s) 131, 305, 315
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 82, 188
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 64, 325
Hin6I GCGC 2 cut(s) 80, 186
HinP1I GCGC 2 cut(s) 80, 186
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 2 cut(s) 53, 301
HpaII CCGG 3 cut(s) 131, 305, 315
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 68, 240
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 68, 240
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 170, 232
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 68, 124, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 144, 241
HpyF3I CTNAG 2 cut(s) 89, 182
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 64, 325
HspAI GCGC 2 cut(s) 80, 186
Kzo9I GATC 3 cut(s) 18, 36, 100
LpnPI CCDG 7 cut(s) 104, 118, 131, 144, 289, 318, 328
Lsp1109I GCAGC 2 cut(s) 149, 253
LweI GCATC 1 cut(s) 228
MabI ACCWGGT 1 cut(s) 117
MaeII ACGT 1 cut(s) 335
MalI GATC 3 cut(s) 20, 38, 102
MboI GATC 3 cut(s) 18, 36, 100
MboII GAAGA 2 cut(s) 19, 310
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 133, 267
MslI CAYNNNNRTG 1 cut(s) 73
MspI CCGG 3 cut(s) 131, 305, 315
MspR9I CCNGG 3 cut(s) 119, 131, 132
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 138, 188
MwoI GCNNNNNNNGC 3 cut(s) 65, 144, 241
NciI CCSGG 2 cut(s) 131, 132
NcoI CCATGG 1 cut(s) 60
NdeII GATC 3 cut(s) 18, 36, 100
NlaIII CATG 2 cut(s) 64, 325
NlaIV GGNNCC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 137, 164, 268
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 73
SatI GCNGC 3 cut(s) 136, 163, 267
Sau3AI GATC 3 cut(s) 18, 36, 100
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 119, 131, 132
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 12, 120, 296, 338
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 228
SmaI CCCGGG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 73
SnaBI TACGTA 1 cut(s) 336
SsiI CCGC 2 cut(s) 57, 136
StyD4I CCNGG 3 cut(s) 117, 129, 130
StyI CCWWGG 2 cut(s) 60, 153
TaaI ACNGT 2 cut(s) 170, 232
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 259
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 2 cut(s) 237, 283
TseI GCWGC 2 cut(s) 162, 266
TspDTI ATGAA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 130
TspRI CASTG 2 cut(s) 237, 283
VneI GTGCAC 1 cut(s) 66
XmaI CCCGGG 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.