Prupe.5G118600_v2.0.a1

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015621
Physical Location & Seq
Reverse (-)
11964010 .. 11964911
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G118600.1

Sequence Viewer

Length: 345 bp
ATGATTCATCAAGCCATTCTTCTACTGTTCTTGCTGGCTTCTGCTTCTGCTTCAGCCATGGGCCCCAAACCCTCGTGCCCCGACATCACGTATCAGTTGGCCCCCTGCGTTTCTTACCTGCTGCAAATTGAGGTGGCGCCGCCTCCGGCTTGCTGTGATGGTGTCAAGTACCTCAGCCAGTATTCAAGTGACAAGGAAGATAGAGAGGCTATATGTTGGTGTATCAAGGGCGCAGCTAGTATGATGGGGCTTACTGATTTTCCTCTCATTTCTGCTCTGCCTAATACCTGCGGCGTTTCTGTAAAACTTCCACCTATCTCTAGCGACATTGATTGTTCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

115

Amino Acids

12.1

Weight (kDa)

4.56

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04531
malus_domestica MD06G1106400.v1.1 MD06G1106500.v1.1
prunus_persica Prupe.5G118600_v2.0.a1 Prupe.5G119200_v2.0.a1 Prupe.5G119400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194911
rosa_laevigata RLG00000004158
rosa_multiflora Rmu_ssc0000157.1_g000006
rosa_roxburghii Rroxscaffold_3G00260900
rosa_rugosa Rorug07G0018700
rosa_samantha Rh7AG146700 Rh7BG147400 Rh7CG150700 Rh7DG147900
rosa_wichuraiana Rw7G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 126, 296
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 2 cut(s) 140, 291
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 186
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 61, 99
ApaI GGGCCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 121, 233
AspLEI GCGC 2 cut(s) 139, 233
AspS9I GGNCC 3 cut(s) 61, 62, 100
BaeGI GKGCMC 2 cut(s) 65, 80
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 65
BauI CACGAG 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 108, 245
BccI CCATC 2 cut(s) 152, 238
BfaI CTAG 2 cut(s) 237, 321
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 2 cut(s) 126, 296
BisI GCNGC 4 cut(s) 122, 140, 234, 292
BlsI GCNGC 4 cut(s) 123, 141, 235, 293
BmgT120I GGNCC 3 cut(s) 61, 62, 100
BmiI GGNNCC 4 cut(s) 63, 64, 102, 138
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 178, 340
BseDI CCNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 2 cut(s) 178, 340
BseSI GKGCMC 2 cut(s) 65, 80
BseXI GCAGC 2 cut(s) 108, 245
BshFI GGCC 2 cut(s) 63, 101
BshNI GGYRCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 146
BsnI GGCC 2 cut(s) 63, 101
Bsp120I GGGCCC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 65, 80
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 140, 291
BspANI GGCC 2 cut(s) 63, 101
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 4 cut(s) 63, 64, 102, 138
BspMI ACCTGC 2 cut(s) 126, 296
BspT107I GGYRCC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 178, 340
BssECI CCNNGG 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 36, 151
BstDEI CTNAG 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 233
BstSLI GKGCMC 2 cut(s) 65, 80
BstV1I GCAGC 2 cut(s) 108, 245
BsuRI GGCC 2 cut(s) 63, 101
BtgI CCRYGG 1 cut(s) 57
BveI ACCTGC 2 cut(s) 126, 296
Cac8I GCNNGC 2 cut(s) 36, 151
CfoI GCGC 2 cut(s) 139, 233
Cfr13I GGNCC 3 cut(s) 61, 62, 100
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 58
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 173
DinI GGCGCC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 59, 212, 214, 242
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 122, 140, 234, 292
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 122, 140, 234, 292
FspBI CTAG 2 cut(s) 237, 321
GlaI GCGC 2 cut(s) 138, 232
GluI GCNGC 4 cut(s) 122, 140, 234, 292
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 63, 101
HapII CCGG 1 cut(s) 146
HhaI GCGC 2 cut(s) 139, 233
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 2 cut(s) 137, 231
HinP1I GCGC 2 cut(s) 137, 231
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 2 cut(s) 137, 231
KasI GGCGCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 20, 118, 131, 159, 191, 301
Lsp1109I GCAGC 2 cut(s) 108, 245
MaeI CTAG 2 cut(s) 237, 321
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 2 cut(s) 11, 209
MhlI GDGCHC 2 cut(s) 65, 80
MluCI AATT 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 137
MnlI CCTC 6 cut(s) 82, 124, 153, 182, 199, 273
MspI CCGG 1 cut(s) 146
NarI GGCGCC 1 cut(s) 137
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 4 cut(s) 63, 64, 102, 138
NmuCI GTSAC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 123, 141, 235, 293
PluTI GGCGCC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 63, 64, 102, 138
PspOMI GGGCCC 1 cut(s) 61
PspPI GGNCC 3 cut(s) 61, 62, 100
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 4 cut(s) 122, 140, 234, 292
Sau96I GGNCC 3 cut(s) 61, 62, 100
SduI GDGCHC 2 cut(s) 65, 80
SetI ASST 7 cut(s) 92, 120, 135, 174, 238, 290, 316
SfoI GGCGCC 1 cut(s) 138
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 140, 291
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 2 cut(s) 237, 321
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 92
TasI AATT 1 cut(s) 126
TauI GCSGC 2 cut(s) 142, 294
TfiI GAWTC 1 cut(s) 4
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 121, 233
Tsp45I GTSAC 1 cut(s) 188
XspI CTAG 2 cut(s) 237, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.