Rorug07G0018700

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015621
Physical Location & Seq
Forward (+)
1427608 .. 1429339
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0018700.1

Sequence Viewer

Length: 879 bp
ATGGCCAGCTCTGCACATACAATGAATGGTGGGGATGGAAAGTACAGCTACAGCTACTCTGTTCACTCTTTTAATCAGGCCCAACAGAAACAACCTAAGTCAGCAGAAATTCAAGTTTACTTTAGTGATTTGGTGTCAAATGATTTCATTCATCTCTTTGCCCGTCTCCCGCAAGATAGGCAATATTTTGCGGCTGGAGTTCCGGGATCTTTTCATGGAAGATTGTTTCCTAAAGCCTCCCTAGATTTTGTTTACTCTCAATGTGCTTTCCAATGGCTTTCTAGGGTACCACCGGAGTTACTTGACTCCAACTCACCTGCATTTAACAAGGGGAGGATTATGTATGGAAATTCGGCTAGTGAAGTTGGTCAGGCATTTTCGGATCAGTATGCCAAGGACATGCAGTCTTTTTTTGATGCTCGAGCCCAAGAGCTTGCTCCTGGAGGGTTATTGTTGTTCTTGATTCCAGGGCGTCCAGATGGAACTGTTCCGGCACAACATTCCTTTCATCCGCTTTTTGAACCCATGGAGTCTAGTCTATCCGATATGGTTAATGAGGGTTTAATAAGTGGAGATAAACTTGACTCTTTCAACTTGCCTATCTACTCTCCATCCATGGAAGAGCTAAGGAAGATAATAGAAAACAGCGACTGCTTTGATGTATTAAGGTTGGAGATCCAATTACCTGAGAGGGCAACCCCTTTGCGCAGTGAGCATGCCAGATCAGGCTTTGAGAAAATTCTCATCAAACACTTTGGGACTGAAATTATAGAACCACTTTTCGATCGATACTCCAAGAAAGTAAAAGGTCGTTCTCCCATTACTTCTTGTGATGGTATGGCTGTTGGATTGTTCGTCCTTCTCAAGCGCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

292

Amino Acids

32.68

Weight (kDa)

6.07

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 28 - 290 1.5e-75 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04531
malus_domestica MD06G1106400.v1.1 MD06G1106500.v1.1
prunus_persica Prupe.5G118600_v2.0.a1 Prupe.5G119200_v2.0.a1 Prupe.5G119400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194911
rosa_laevigata RLG00000004158
rosa_multiflora Rmu_ssc0000157.1_g000006
rosa_roxburghii Rroxscaffold_3G00260900
rosa_rugosa Rorug07G0018700
rosa_samantha Rh7AG146700 Rh7BG147400 Rh7CG150700 Rh7DG147900
rosa_wichuraiana Rw7G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc16I TGCGCA 1 cut(s) 707
Acc36I ACCTGC 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AciI CCGC 3 cut(s) 170, 191, 512
AclWI GGATC 3 cut(s) 214, 390, 670
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 108, 349, 738
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 2 cut(s) 44, 288
AgsI TTSAA 3 cut(s) 113, 521, 592
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 2 cut(s) 439, 466
AluBI AGCT 5 cut(s) 9, 48, 54, 433, 625
AluI AGCT 5 cut(s) 9, 48, 54, 433, 625
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 3 cut(s) 214, 390, 670
AlwNI CAGNNNCTG 1 cut(s) 651
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 2 cut(s) 3, 78
ApoI RAATTY 3 cut(s) 108, 349, 738
Asp718I GGTACC 1 cut(s) 286
AspLEI GCGC 2 cut(s) 708, 870
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 420
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 427
BccI CCATC 4 cut(s) 29, 473, 619, 827
BciT130I CCWGG 2 cut(s) 441, 468
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 4 cut(s) 242, 282, 357, 534
BfmI CTRYAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 3 cut(s) 204, 441, 468
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 204, 441, 468
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 2 cut(s) 216, 462
Bpu10I CCTNAGC 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 787
BsaHI GRCGYC 1 cut(s) 472
BsaJI CCNNGG 4 cut(s) 393, 467, 525, 615
BsaWI WCCGGW 1 cut(s) 292
BseBI CCWGG 2 cut(s) 441, 468
BseCI ATCGAT 1 cut(s) 787
BseDI CCNNGG 4 cut(s) 393, 467, 525, 615
BseGI GGATG 3 cut(s) 40, 508, 611
BseMII CTCAG 1 cut(s) 678
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 2 cut(s) 5, 80
BshNI GGYRCC 1 cut(s) 286
BshVI ATCGAT 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 787
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 3 cut(s) 203, 293, 491
BslFI GGGAC 1 cut(s) 772
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 2 cut(s) 5, 80
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 5 cut(s) 206, 382, 675, 722, 784
Bsp19I CCATGG 2 cut(s) 525, 615
BspACI CCGC 3 cut(s) 170, 191, 512
BspANI GGCC 2 cut(s) 5, 80
BspCNI CTCAG 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 787
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 3 cut(s) 214, 390, 670
BspQI GCTCTTC 1 cut(s) 615
BspT107I GGYRCC 1 cut(s) 286
BssECI CCNNGG 4 cut(s) 393, 467, 525, 615
BssMI GATC 5 cut(s) 206, 382, 675, 722, 784
BssNI GRCGYC 1 cut(s) 472
BssT1I CCWWGG 3 cut(s) 393, 525, 615
Bst2UI CCWGG 2 cut(s) 441, 468
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 7, 435, 717
BstDEI CTNAG 3 cut(s) 96, 626, 687
BstDSI CCRYGG 2 cut(s) 525, 615
BstF5I GGATG 3 cut(s) 40, 508, 611
BstHHI GCGC 2 cut(s) 708, 870
BstKTI GATC 5 cut(s) 209, 385, 678, 725, 787
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 206, 382, 675, 722, 784
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 3 cut(s) 11, 178, 712
BstNI CCWGG 2 cut(s) 441, 468
BstNSI RCATGY 2 cut(s) 403, 719
BstSCI CCNGG 3 cut(s) 202, 439, 466
BstSFI CTRYAG 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 206, 675
BstYI RGATCY 2 cut(s) 206, 675
Bsu15I ATCGAT 1 cut(s) 787
BsuRI GGCC 2 cut(s) 5, 80
BsuTUI ATCGAT 1 cut(s) 787
BtgI CCRYGG 2 cut(s) 525, 615
BtsCI GGATG 3 cut(s) 40, 508, 611
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 3 cut(s) 7, 435, 717
CaiI CAGNNNCTG 1 cut(s) 651
CfoI GCGC 2 cut(s) 708, 870
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 787
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 43, 287
CviAII CATG 5 cut(s) 215, 400, 526, 616, 716
CviQI GTAC 2 cut(s) 43, 287
DdeI CTNAG 3 cut(s) 96, 626, 687
DpnI GATC 5 cut(s) 208, 384, 677, 724, 786
DpnII GATC 5 cut(s) 206, 382, 675, 722, 784
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 615
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 3 cut(s) 393, 525, 615
Eco24I GRGCYC 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 439, 466
EcoT14I CCWWGG 3 cut(s) 393, 525, 615
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 3 cut(s) 393, 525, 615
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 5 cut(s) 218, 403, 529, 619, 719
FaqI GGGAC 1 cut(s) 772
FatI CATG 5 cut(s) 214, 399, 525, 615, 715
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 3 cut(s) 47, 495, 598
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 4 cut(s) 242, 282, 357, 534
FspI TGCGCA 1 cut(s) 707
GlaI GCGC 2 cut(s) 707, 869
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 216, 462
HaeIII GGCC 2 cut(s) 5, 80
HapII CCGG 3 cut(s) 203, 293, 491
HgaI GACGC 1 cut(s) 461
HhaI GCGC 2 cut(s) 708, 870
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 5 cut(s) 218, 403, 529, 619, 719
Hin6I GCGC 2 cut(s) 706, 868
HinP1I GCGC 2 cut(s) 706, 868
HinfI GANTC 4 cut(s) 305, 463, 530, 584
HpaII CCGG 3 cut(s) 203, 293, 491
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 3 cut(s) 64, 118, 253
Hpy188I TCNGA 2 cut(s) 382, 544
Hpy188III TCNNGA 2 cut(s) 460, 476
Hpy8I GTNNAC 3 cut(s) 64, 118, 253
HpyAV CCTTC 1 cut(s) 869
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 14, 320, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 178, 712
HpyF3I CTNAG 3 cut(s) 96, 626, 687
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 5 cut(s) 218, 403, 529, 619, 719
HspAI GCGC 2 cut(s) 706, 868
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 5 cut(s) 206, 382, 675, 722, 784
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 1 cut(s) 442
LweI GCATC 1 cut(s) 406
MaeI CTAG 4 cut(s) 242, 282, 357, 534
MaeIII GTNAC 1 cut(s) 297
MalI GATC 5 cut(s) 208, 384, 677, 724, 786
MboI GATC 5 cut(s) 206, 382, 675, 722, 784
MboII GAAGA 3 cut(s) 231, 632, 643
MflI RGATCY 2 cut(s) 206, 675
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 108, 349, 680, 738, 765
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 299, 539, 578
MmeI TCCRAC 3 cut(s) 333, 651, 826
MnlI CCTC 5 cut(s) 247, 327, 437, 550, 684
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 72, 324, 552, 563, 665, 877
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 203, 293, 491
MspR9I CCNGG 3 cut(s) 204, 441, 468
MvaI CCWGG 2 cut(s) 441, 468
MwoI GCNNNNNNNGC 3 cut(s) 11, 178, 712
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 2 cut(s) 525, 615
NdeII GATC 5 cut(s) 206, 382, 675, 722, 784
NlaIII CATG 5 cut(s) 218, 403, 529, 619, 719
NlaIV GGNNCC 1 cut(s) 288
NsbI TGCGCA 1 cut(s) 707
NspI RCATGY 2 cut(s) 403, 719
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 615
PfeI GAWTC 1 cut(s) 463
PfoI TCCNGGA 2 cut(s) 202, 439
PkrI GCNGC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 787
PleI GAGTC 3 cut(s) 299, 538, 578
PpsI GAGTC 3 cut(s) 299, 538, 578
Psp6I CCWGG 2 cut(s) 439, 466
PspGI CCWGG 2 cut(s) 439, 466
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 651
PsuI RGATCY 2 cut(s) 206, 675
PvuI CGATCG 1 cut(s) 787
RsaI GTAC 2 cut(s) 44, 288
RsaNI GTAC 2 cut(s) 43, 287
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 6 cut(s) 72, 324, 552, 563, 665, 877
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 5 cut(s) 206, 382, 675, 722, 784
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 3 cut(s) 299, 539, 578
ScrFI CCNGG 3 cut(s) 204, 441, 468
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 420, 863
SmoI CTYRAG 2 cut(s) 420, 863
SphI GCATGC 1 cut(s) 719
Sse9I AATT 5 cut(s) 108, 349, 680, 738, 765
SsiI CCGC 3 cut(s) 170, 191, 512
SspI AATATT 1 cut(s) 185
SspMI CTAG 4 cut(s) 242, 282, 357, 534
StyD4I CCNGG 3 cut(s) 202, 439, 466
StyI CCWWGG 3 cut(s) 393, 525, 615
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 421, 783, 787
TasI AATT 5 cut(s) 108, 349, 680, 738, 765
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 6 cut(s) 72, 324, 552, 563, 665, 877
Tru9I TTAA 6 cut(s) 72, 324, 552, 563, 665, 877
TscAI CASTG 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 38, 136, 140, 203, 497
TspRI CASTG 1 cut(s) 715
XapI RAATTY 3 cut(s) 108, 349, 738
XceI RCATGY 2 cut(s) 403, 719
XhoI CTCGAG 1 cut(s) 420
XspI CTAG 4 cut(s) 242, 282, 357, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.