chitin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50350 |
| fragaria_vesca | FvH4_5g07650 |
| malus_domestica | MD06G1148700.v1.1 MD14G1162500.v1.1 MD14G1162600.v1.1 |
| prunus_persica | Prupe.5G155700_v2.0.a1 Prupe.5G155700_v2.0.a1 |
| pyrus_communis | pycom06g13810 pycom14g13540 |
| rosa_chinensis | RchiOBHm_Chr1g0380401 RchiOBHm_Chr7g0190821 |
| rosa_laevigata | RLG00000004491 RLG00000026306 |
| rosa_multiflora | Rmu_sc0002819.1_g000002 Rmu_sc0005371.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00264270 Rroxscaffold_4G00279420 |
| rosa_rugosa | Rorug01G0420500 Rorug01G0420600 Rorug01G0420700 Rorug06G0507400 |
| rosa_samantha | Rh1AG444900 Rh1BG400000 Rh1CG414700 Rh1DG430000 Rh5AG542600 Rh7AG114000 Rh7BG116600 Rh7CG119300 Rh7DG117800 |
| rosa_wichuraiana | Rw1G038720 Rw7G009950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 257, 598 |
| Acc36I | ACCTGC | 1 cut(s) | 342 |
| AccBSI | CCGCTC | 2 cut(s) | 148, 294 |
| AccI | GTMKAC | 1 cut(s) | 1226 |
| AccII | CGCG | 1 cut(s) | 135 |
| AcsI | RAATTY | 1 cut(s) | 622 |
| AcuI | CTGAAG | 1 cut(s) | 839 |
| AcyI | GRCGYC | 1 cut(s) | 38 |
| AdeI | CACNNNGTG | 1 cut(s) | 824 |
| AfaI | GTAC | 3 cut(s) | 553, 852, 942 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 194, 195, 380, 697, 1044 |
| AflII | CTTAAG | 1 cut(s) | 1529 |
| AgeI | ACCGGT | 1 cut(s) | 181 |
| AgsI | TTSAA | 5 cut(s) | 19, 621, 1119, 1176, 1564 |
| AhlI | ACTAGT | 1 cut(s) | 1283 |
| AjnI | CCWGG | 3 cut(s) | 394, 820, 1393 |
| Alw21I | GWGCWC | 3 cut(s) | 52, 311, 969 |
| Alw26I | GTCTC | 6 cut(s) | 102, 156, 337, 364, 1274, 1598 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 821 |
| Ama87I | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 3 cut(s) | 123, 326, 1374 |
| ApoI | RAATTY | 1 cut(s) | 622 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 77, 109 |
| AsiGI | ACCGGT | 1 cut(s) | 181 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 990, 1582 |
| AspLEI | GCGC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 3 cut(s) | 371, 392, 700 |
| AsuC2I | CCSGG | 3 cut(s) | 112, 233, 633 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 413, 836 |
| AsuII | TTCGAA | 1 cut(s) | 83 |
| AsuNHI | GCTAGC | 1 cut(s) | 1370 |
| AvaI | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| AvaII | GGWCC | 3 cut(s) | 371, 392, 700 |
| BanII | GRGCYC | 3 cut(s) | 311, 969, 1394 |
| BbsI | GAAGAC | 4 cut(s) | 75, 687, 761, 1134 |
| Bbv12I | GWGCWC | 3 cut(s) | 52, 311, 969 |
| BbvI | GCAGC | 3 cut(s) | 110, 313, 1386 |
| BccI | CCATC | 7 cut(s) | 671, 710, 1036, 1145, 1240, 1244, 1533 |
| BceAI | ACGGC | 2 cut(s) | 72, 242 |
| BciT130I | CCWGG | 3 cut(s) | 396, 822, 1395 |
| BcnI | CCSGG | 3 cut(s) | 112, 233, 633 |
| BcoDI | GTCTC | 6 cut(s) | 102, 156, 337, 364, 1274, 1598 |
| BcuI | ACTAGT | 1 cut(s) | 1283 |
| BfaI | CTAG | 4 cut(s) | 530, 687, 1284, 1371 |
| BfmI | CTRYAG | 1 cut(s) | 1302 |
| BfoI | RGCGCY | 1 cut(s) | 109 |
| BfrI | CTTAAG | 1 cut(s) | 1529 |
| BfuAI | ACCTGC | 1 cut(s) | 342 |
| BglII | AGATCT | 1 cut(s) | 644 |
| BisI | GCNGC | 5 cut(s) | 124, 292, 327, 1017, 1375 |
| BlsI | GCNGC | 5 cut(s) | 125, 293, 328, 1018, 1376 |
| Bme1390I | CCNGG | 6 cut(s) | 112, 233, 396, 633, 822, 1395 |
| Bme18I | GGWCC | 3 cut(s) | 371, 392, 700 |
| BmeT110I | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| BmgT120I | GGNCC | 3 cut(s) | 371, 392, 700 |
| BmiI | GGNNCC | 5 cut(s) | 60, 116, 186, 1391, 1498 |
| BmrFI | CCNGG | 6 cut(s) | 112, 233, 396, 633, 822, 1395 |
| BmsI | GCATC | 4 cut(s) | 715, 1282, 1298, 1602 |
| BmtI | GCTAGC | 1 cut(s) | 1374 |
| BpiI | GAAGAC | 4 cut(s) | 75, 687, 761, 1134 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 82, 114, 631, 663, 1457, 1489 |
| BpmI | CTGGAG | 1 cut(s) | 1408 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| Bpu14I | TTCGAA | 1 cut(s) | 83 |
| BpuMI | CCSGG | 3 cut(s) | 112, 233, 633 |
| BsaBI | GATNNNNATC | 2 cut(s) | 531, 1518 |
| BsaHI | GRCGYC | 1 cut(s) | 38 |
| BsaI | GGTCTC | 2 cut(s) | 364, 1598 |
| BsaJI | CCNNGG | 6 cut(s) | 9, 54, 286, 1265, 1378, 1393 |
| BsaWI | WCCGGW | 1 cut(s) | 181 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 194, 195, 380, 697, 1044 |
| Bse118I | RCCGGY | 3 cut(s) | 102, 154, 181 |
| Bse1I | ACTGG | 2 cut(s) | 330, 691 |
| Bse8I | GATNNNNATC | 2 cut(s) | 531, 1518 |
| BseBI | CCWGG | 3 cut(s) | 396, 822, 1395 |
| BseDI | CCNNGG | 6 cut(s) | 9, 54, 286, 1265, 1378, 1393 |
| BseGI | GGATG | 5 cut(s) | 730, 1255, 1313, 1519, 1617 |
| BseJI | GATNNNNATC | 2 cut(s) | 531, 1518 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 194, 195, 380, 697, 1044 |
| BseMII | CTCAG | 5 cut(s) | 110, 510, 664, 1074, 1495 |
| BseNI | ACTGG | 2 cut(s) | 330, 691 |
| BseRI | GAGGAG | 6 cut(s) | 265, 655, 877, 1060, 1100, 1221 |
| BseXI | GCAGC | 3 cut(s) | 110, 313, 1386 |
| BseYI | CCCAGC | 1 cut(s) | 188 |
| Bsh1236I | CGCG | 1 cut(s) | 135 |
| Bsh1285I | CGRYCG | 3 cut(s) | 45, 286, 485 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BshTI | ACCGGT | 1 cut(s) | 181 |
| BsiEI | CGRYCG | 3 cut(s) | 45, 286, 485 |
| BsiHKAI | GWGCWC | 3 cut(s) | 52, 311, 969 |
| BsiHKCI | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| BsiSI | CCGG | 9 cut(s) | 62, 103, 112, 143, 155, 182, 233, 632, 1587 |
| BslFI | GGGAC | 1 cut(s) | 586 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 194, 195, 380, 697, 1044 |
| BsmAI | GTCTC | 6 cut(s) | 102, 156, 337, 364, 1274, 1598 |
| BsmBI | CGTCTC | 3 cut(s) | 102, 156, 337 |
| BsmFI | GGGAC | 1 cut(s) | 586 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bso31I | GGTCTC | 2 cut(s) | 364, 1598 |
| BsoBI | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| Bsp119I | TTCGAA | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 4 cut(s) | 52, 311, 969, 1394 |
| Bsp143I | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| Bsp19I | CCATGG | 1 cut(s) | 1378 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 5 cut(s) | 111, 511, 663, 1075, 1494 |
| BspFNI | CGCG | 1 cut(s) | 135 |
| BspLI | GGNNCC | 5 cut(s) | 60, 116, 186, 1391, 1498 |
| BspMI | ACCTGC | 1 cut(s) | 342 |
| BspOI | GCTAGC | 1 cut(s) | 1374 |
| BspT104I | TTCGAA | 1 cut(s) | 83 |
| BspTI | CTTAAG | 1 cut(s) | 1529 |
| BspTNI | GGTCTC | 2 cut(s) | 364, 1598 |
| BsrBI | CCGCTC | 2 cut(s) | 148, 294 |
| BsrFI | RCCGGY | 3 cut(s) | 102, 154, 181 |
| BsrI | ACTGG | 2 cut(s) | 330, 691 |
| BssAI | RCCGGY | 3 cut(s) | 102, 154, 181 |
| BssECI | CCNNGG | 6 cut(s) | 9, 54, 286, 1265, 1378, 1393 |
| BssMI | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| BssNI | GRCGYC | 1 cut(s) | 38 |
| BssT1I | CCWWGG | 2 cut(s) | 1265, 1378 |
| Bst2UI | CCWGG | 3 cut(s) | 396, 822, 1395 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 371, 811, 903 |
| Bst6I | CTCTTC | 1 cut(s) | 1239 |
| BstACI | GRCGYC | 1 cut(s) | 38 |
| BstAFI | CTTAAG | 1 cut(s) | 1529 |
| BstBI | TTCGAA | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 1372 |
| BstDEI | CTNAG | 8 cut(s) | 119, 519, 558, 650, 972, 1071, 1083, 1481 |
| BstDSI | CCRYGG | 2 cut(s) | 54, 1378 |
| BstF5I | GGATG | 5 cut(s) | 730, 1255, 1313, 1519, 1617 |
| BstFNI | CGCG | 1 cut(s) | 135 |
| BstH2I | RGCGCY | 1 cut(s) | 109 |
| BstHHI | GCGC | 1 cut(s) | 108 |
| BstKTI | GATC | 8 cut(s) | 45, 240, 485, 529, 535, 647, 873, 1354 |
| BstMAI | GTCTC | 6 cut(s) | 102, 156, 337, 364, 1274, 1598 |
| BstMBI | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| BstMCI | CGRYCG | 3 cut(s) | 45, 286, 485 |
| BstNI | CCWGG | 3 cut(s) | 396, 822, 1395 |
| BstSCI | CCNGG | 6 cut(s) | 110, 231, 394, 631, 820, 1393 |
| BstSFI | CTRYAG | 1 cut(s) | 1302 |
| BstUI | CGCG | 1 cut(s) | 135 |
| BstV1I | GCAGC | 3 cut(s) | 110, 313, 1386 |
| BstV2I | GAAGAC | 4 cut(s) | 75, 687, 761, 1134 |
| BstX2I | RGATCY | 1 cut(s) | 644 |
| BstYI | RGATCY | 1 cut(s) | 644 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtgI | CCRYGG | 2 cut(s) | 54, 1378 |
| BtgZI | GCGATG | 1 cut(s) | 1259 |
| BtsCI | GGATG | 5 cut(s) | 730, 1255, 1313, 1519, 1617 |
| BtsI | GCAGTG | 2 cut(s) | 421, 1280 |
| BtsIMutI | CAGTG | 5 cut(s) | 337, 421, 807, 1280, 1489 |
| BveI | ACCTGC | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 1372 |
| CaiI | CAGNNNCTG | 1 cut(s) | 821 |
| CfoI | GCGC | 1 cut(s) | 108 |
| Cfr10I | RCCGGY | 3 cut(s) | 102, 154, 181 |
| Cfr13I | GGNCC | 3 cut(s) | 371, 392, 700 |
| CpoI | CGGWCCG | 1 cut(s) | 371 |
| CseI | GACGC | 1 cut(s) | 46 |
| CsiI | ACCWGGT | 2 cut(s) | 394, 820 |
| Csp6I | GTAC | 3 cut(s) | 552, 851, 941 |
| CspAI | ACCGGT | 1 cut(s) | 181 |
| CspI | CGGWCCG | 1 cut(s) | 371 |
| CviAII | CATG | 4 cut(s) | 674, 1379, 1423, 1510 |
| CviQI | GTAC | 3 cut(s) | 552, 851, 941 |
| DdeI | CTNAG | 8 cut(s) | 119, 519, 558, 650, 972, 1071, 1083, 1481 |
| DpnI | GATC | 8 cut(s) | 44, 239, 484, 528, 534, 646, 872, 1353 |
| DpnII | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| DraIII | CACNNNGTG | 1 cut(s) | 824 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 257, 598 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 257, 598 |
| Eam1104I | CTCTTC | 1 cut(s) | 1239 |
| EarI | CTCTTC | 1 cut(s) | 1239 |
| EciI | GGCGGA | 2 cut(s) | 80, 268 |
| Ecl136II | GAGCTC | 2 cut(s) | 309, 967 |
| Eco130I | CCWWGG | 2 cut(s) | 1265, 1378 |
| Eco24I | GRGCYC | 3 cut(s) | 311, 969, 1394 |
| Eco31I | GGTCTC | 2 cut(s) | 364, 1598 |
| Eco47I | GGWCC | 3 cut(s) | 371, 392, 700 |
| Eco53kI | GAGCTC | 2 cut(s) | 309, 967 |
| Eco57I | CTGAAG | 1 cut(s) | 839 |
| Eco88I | CYCGRG | 4 cut(s) | 223, 361, 435, 995 |
| EcoICRI | GAGCTC | 2 cut(s) | 309, 967 |
| EcoRII | CCWGG | 3 cut(s) | 394, 820, 1393 |
| EcoT14I | CCWWGG | 2 cut(s) | 1265, 1378 |
| EcoT38I | GRGCYC | 3 cut(s) | 311, 969, 1394 |
| ErhI | CCWWGG | 2 cut(s) | 1265, 1378 |
| Esp3I | CGTCTC | 3 cut(s) | 102, 156, 337 |
| FaeI | CATG | 4 cut(s) | 677, 1382, 1426, 1513 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 837, 869, 975, 1007 |
| FaqI | GGGAC | 1 cut(s) | 586 |
| FatI | CATG | 4 cut(s) | 673, 1378, 1422, 1509 |
| FauI | CCCGC | 2 cut(s) | 128, 151 |
| FblI | GTMKAC | 1 cut(s) | 1226 |
| Fnu4HI | GCNGC | 5 cut(s) | 124, 292, 327, 1017, 1375 |
| FokI | GGATG | 4 cut(s) | 737, 1262, 1320, 1526 |
| FriOI | GRGCYC | 3 cut(s) | 311, 969, 1394 |
| Fsp4HI | GCNGC | 5 cut(s) | 124, 292, 327, 1017, 1375 |
| FspBI | CTAG | 4 cut(s) | 530, 687, 1284, 1371 |
| GlaI | GCGC | 1 cut(s) | 107 |
| GluI | GCNGC | 5 cut(s) | 124, 292, 327, 1017, 1375 |
| GsaI | CCCAGC | 1 cut(s) | 192 |
| GsuI | CTGGAG | 1 cut(s) | 1408 |
| HaeII | RGCGCY | 1 cut(s) | 109 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 9 cut(s) | 62, 103, 112, 143, 155, 182, 233, 632, 1587 |
| HgaI | GACGC | 1 cut(s) | 46 |
| HhaI | GCGC | 1 cut(s) | 108 |
| Hin1I | GRCGYC | 1 cut(s) | 38 |
| Hin1II | CATG | 4 cut(s) | 677, 1382, 1426, 1513 |
| Hin6I | GCGC | 1 cut(s) | 106 |
| HinP1I | GCGC | 1 cut(s) | 106 |
| HincII | GTYRAC | 2 cut(s) | 208, 612 |
| HindII | GTYRAC | 2 cut(s) | 208, 612 |
| HinfI | GANTC | 7 cut(s) | 71, 85, 228, 515, 617, 1202, 1213 |
| HpaII | CCGG | 9 cut(s) | 62, 103, 112, 143, 155, 182, 233, 632, 1587 |
| HphI | GGTGA | 3 cut(s) | 92, 413, 836 |
| Hpy166II | GTNNAC | 4 cut(s) | 208, 392, 612, 1227 |
| Hpy188III | TCNNGA | 6 cut(s) | 225, 361, 530, 874, 995, 1032 |
| Hpy8I | GTNNAC | 4 cut(s) | 208, 392, 612, 1227 |
| Hpy99I | CGWCG | 2 cut(s) | 31, 263 |
| HpyAV | CCTTC | 4 cut(s) | 435, 471, 778, 1035 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 371, 811, 903 |
| HpyCH4IV | ACGT | 1 cut(s) | 832 |
| HpyCH4V | TGCA | 5 cut(s) | 573, 1259, 1273, 1311, 1348 |
| HpyF3I | CTNAG | 8 cut(s) | 119, 519, 558, 650, 972, 1071, 1083, 1481 |
| HpySE526I | ACGT | 1 cut(s) | 832 |
| Hsp92I | GRCGYC | 1 cut(s) | 38 |
| Hsp92II | CATG | 4 cut(s) | 677, 1382, 1426, 1513 |
| HspAI | GCGC | 1 cut(s) | 106 |
| KroI | GCCGGC | 1 cut(s) | 154 |
| KroNI | GCCGGC | 1 cut(s) | 156 |
| Kzo9I | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| Lsp1109I | GCAGC | 3 cut(s) | 110, 313, 1386 |
| LweI | GCATC | 4 cut(s) | 715, 1282, 1298, 1602 |
| MabI | ACCWGGT | 2 cut(s) | 394, 820 |
| MaeI | CTAG | 4 cut(s) | 530, 687, 1284, 1371 |
| MaeII | ACGT | 1 cut(s) | 832 |
| MaeIII | GTNAC | 2 cut(s) | 1049, 1286 |
| MalI | GATC | 8 cut(s) | 44, 239, 484, 528, 534, 646, 872, 1353 |
| MbiI | CCGCTC | 2 cut(s) | 148, 294 |
| MboI | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| MfeI | CAATTG | 1 cut(s) | 1146 |
| MflI | RGATCY | 1 cut(s) | 644 |
| MhlI | GDGCHC | 4 cut(s) | 52, 311, 969, 1394 |
| MluCI | AATT | 9 cut(s) | 427, 466, 622, 880, 893, 986, 1146, 1416, 1578 |
| MlyI | GAGTC | 2 cut(s) | 65, 1222 |
| MmeI | TCCRAC | 1 cut(s) | 759 |
| MroNI | GCCGGC | 1 cut(s) | 154 |
| MroXI | GAANNNNTTC | 2 cut(s) | 990, 1582 |
| MseI | TTAA | 4 cut(s) | 270, 666, 1419, 1530 |
| MspCI | CTTAAG | 1 cut(s) | 1529 |
| MspI | CCGG | 9 cut(s) | 62, 103, 112, 143, 155, 182, 233, 632, 1587 |
| MspR9I | CCNGG | 6 cut(s) | 112, 233, 396, 633, 822, 1395 |
| MunI | CAATTG | 1 cut(s) | 1146 |
| MvaI | CCWGG | 3 cut(s) | 396, 822, 1395 |
| MvnI | CGCG | 1 cut(s) | 135 |
| NaeI | GCCGGC | 1 cut(s) | 156 |
| NciI | CCSGG | 3 cut(s) | 112, 233, 633 |
| NcoI | CCATGG | 1 cut(s) | 1378 |
| NdeII | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| NgoMIV | GCCGGC | 1 cut(s) | 154 |
| NheI | GCTAGC | 1 cut(s) | 1370 |
| NlaIII | CATG | 4 cut(s) | 677, 1382, 1426, 1513 |
| NlaIV | GGNNCC | 5 cut(s) | 60, 116, 186, 1391, 1498 |
| NspV | TTCGAA | 1 cut(s) | 83 |
| PaeR7I | CTCGAG | 2 cut(s) | 361, 435 |
| PdiI | GCCGGC | 1 cut(s) | 156 |
| PdmI | GAANNNNTTC | 2 cut(s) | 990, 1582 |
| PfeI | GAWTC | 5 cut(s) | 85, 228, 515, 617, 1202 |
| PfoI | TCCNGGA | 2 cut(s) | 110, 231 |
| PinAI | ACCGGT | 1 cut(s) | 181 |
| PkrI | GCNGC | 5 cut(s) | 125, 293, 328, 1018, 1376 |
| Ple19I | CGATCG | 2 cut(s) | 45, 485 |
| PleI | GAGTC | 2 cut(s) | 65, 1221 |
| PpsI | GAGTC | 2 cut(s) | 65, 1221 |
| Psp124BI | GAGCTC | 2 cut(s) | 311, 969 |
| Psp6I | CCWGG | 3 cut(s) | 394, 820, 1393 |
| PspFI | CCCAGC | 1 cut(s) | 188 |
| PspGI | CCWGG | 3 cut(s) | 394, 820, 1393 |
| PspN4I | GGNNCC | 5 cut(s) | 60, 116, 186, 1391, 1498 |
| PspPI | GGNCC | 3 cut(s) | 371, 392, 700 |
| PspXI | VCTCGAGB | 1 cut(s) | 435 |
| PstNI | CAGNNNCTG | 1 cut(s) | 821 |
| PsuI | RGATCY | 1 cut(s) | 644 |
| PvuI | CGATCG | 2 cut(s) | 45, 485 |
| RsaI | GTAC | 3 cut(s) | 553, 852, 942 |
| RsaNI | GTAC | 3 cut(s) | 552, 851, 941 |
| Rsr2I | CGGWCCG | 1 cut(s) | 371 |
| RsrII | CGGWCCG | 1 cut(s) | 371 |
| SacI | GAGCTC | 2 cut(s) | 311, 969 |
| SaqAI | TTAA | 4 cut(s) | 270, 666, 1419, 1530 |
| SatI | GCNGC | 5 cut(s) | 124, 292, 327, 1017, 1375 |
| Sau3AI | GATC | 8 cut(s) | 42, 237, 482, 526, 532, 644, 870, 1351 |
| Sau96I | GGNCC | 3 cut(s) | 371, 392, 700 |
| SchI | GAGTC | 2 cut(s) | 65, 1222 |
| ScrFI | CCNGG | 6 cut(s) | 112, 233, 396, 633, 822, 1395 |
| SduI | GDGCHC | 4 cut(s) | 52, 311, 969, 1394 |
| SexAI | ACCWGGT | 2 cut(s) | 394, 820 |
| SfaNI | GCATC | 4 cut(s) | 715, 1282, 1298, 1602 |
| SfcI | CTRYAG | 1 cut(s) | 1302 |
| Sfr274I | CTCGAG | 2 cut(s) | 361, 435 |
| SfuI | TTCGAA | 1 cut(s) | 83 |
| SgrAI | CRCCGGYG | 1 cut(s) | 102 |
| SinI | GGWCC | 3 cut(s) | 371, 392, 700 |
| SlaI | CTCGAG | 2 cut(s) | 361, 435 |
| SmlI | CTYRAG | 3 cut(s) | 361, 435, 1529 |
| SmoI | CTYRAG | 3 cut(s) | 361, 435, 1529 |
| SpeI | ACTAGT | 1 cut(s) | 1283 |
| Sse9I | AATT | 9 cut(s) | 427, 466, 622, 880, 893, 986, 1146, 1416, 1578 |
| SspMI | CTAG | 4 cut(s) | 530, 687, 1284, 1371 |
| SstI | GAGCTC | 2 cut(s) | 311, 969 |
| StyD4I | CCNGG | 6 cut(s) | 110, 231, 394, 631, 820, 1393 |
| StyI | CCWWGG | 2 cut(s) | 1265, 1378 |
| TaaI | ACNGT | 4 cut(s) | 214, 371, 811, 903 |
| TaiI | ACGT | 1 cut(s) | 835 |
| TaqII | GACCGA | 3 cut(s) | 300, 346, 688 |
| TasI | AATT | 9 cut(s) | 427, 466, 622, 880, 893, 986, 1146, 1416, 1578 |
| TatI | WGTACW | 2 cut(s) | 850, 940 |
| TauI | GCSGC | 2 cut(s) | 294, 1019 |
| TfiI | GAWTC | 5 cut(s) | 85, 228, 515, 617, 1202 |
| Tru1I | TTAA | 4 cut(s) | 270, 666, 1419, 1530 |
| Tru9I | TTAA | 4 cut(s) | 270, 666, 1419, 1530 |
| TscAI | CASTG | 5 cut(s) | 337, 421, 814, 1280, 1489 |
| TseI | GCWGC | 3 cut(s) | 123, 326, 1374 |
| TspDTI | ATGAA | 2 cut(s) | 189, 1102 |
| TspGWI | ACGGA | 1 cut(s) | 1148 |
| TspRI | CASTG | 5 cut(s) | 337, 421, 814, 1280, 1489 |
| Vha464I | CTTAAG | 1 cut(s) | 1529 |
| VpaK11BI | GGWCC | 3 cut(s) | 371, 392, 700 |
| XapI | RAATTY | 1 cut(s) | 622 |
| XbaI | TCTAGA | 1 cut(s) | 529 |
| XhoI | CTCGAG | 2 cut(s) | 361, 435 |
| XmiI | GTMKAC | 1 cut(s) | 1226 |
| XmnI | GAANNNNTTC | 2 cut(s) | 990, 1582 |
| XspI | CTAG | 4 cut(s) | 530, 687, 1284, 1371 |