Rorug06G0507400

chitin binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
62228123 .. 62236284
8162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0507400.1

Sequence Viewer

Length: 3261 bp
ATGAGCCGGCCAAGTACTCGGAGTAAAAACAAACGAAATAAGCAAGGGGATAATGGTGACACCACTTCTGAAATATTGCGGAAAATTCATGCAACGGGTGAAATAACAAACCAGGATATAAACACACTGTATAAAATTTCAAAGCCGGTTTGTCAGGGCTGCCGTGTGAATACTAAAGACAATCCGAATTGCTTTTGTGGGCTAATTCCACCTCCTAATGGCAGTCGGAAATCTGGCTTGTGGCAGAAGACATCTGAGATTCTGCAAAACCTTGGCCCGGACCCTTCTCAGGATCTTCGTTCTTCTGATGACTGTCCTGCAGGCCTCACAAATCTCGGTGCGACATGTTATGCTAACAGCATACTCCAGTGTTTGTATATGAACAAGCCCTTTCGTGAAGGTATCTTCTTGGTTGAACCTGATGTCTTGGAACAACAGCCGGTGTTGAATCAACTTTCTCGGCTTTTTGCACAGTTGCATCTCAGCAAAATGGCTTTCATAGACTCATCCCCATTTGTGAAAACTTTGGAGTTGGATAATGGAGTTCAACAGGACAGTCATGAATTTCTAACGTTATTGCTGTCTTTGTTGGAACGTTGTCTAAGCCACTCTAAAATTTTGAAGGCAAAAGCTATTGTTCAAGATCTTTTCCGTGGAAGTGTGTCACATGTTACGAGGTGCTCAAAATGTGGAAAAGACTCTGAAGCTTCTTCAAACATGGAAGACTTTTATGAATTGGAGTTGAATGTGAAGGGTTTGAAAAGTTTGGATGAGAGTTTAGATGATTACCTCAGTGTTGAAGAGCTTCAGGGAGACAATCAATATTTCTGCGAGTCATGTAAAACAAGAGTTGATGCTACTCGAAGCATCAAGTTGCGCACATTGCCTACTGTTCTGAATTTTCAGCTTAAGCGATGTGTTTTCCTTCCAAAGACGACAACAAAGAAGAAGATTACATCTGCATTTATGTTTCCTGGAGTACTTGATATGAGGCAGAGGCTATCTGAGCCTTCTCAGATTGAATCAATATATGACTTGTCAGCTGTGCTGATTCACAAGGGAACTGCAGTTAACAGTGGCCACTATGTAGCACATATCAAGGATGAGAAGACAGGGCAATGGTGGGAATTTGACGATGAGCATGTCTCAAACTTAGGGACTCACCCGTTTGGAGAAGGGACTTCTAGTTCCAATAGCAAGCCTCTTAAACCTGAAGCAGTTAACCCATCTTGCTCAGAACAGATGAATGGTGTTTCTAATGGTGATAAGATGGATATTGATCACCAACAACCTTCAGATTCTATTACTAGTTGTGATGTGGAGACATTTTCATCAAGTGATGCATATATGCTGATGTATAATCTCAGGCATTCCTGGAAGGATAATGGGAAAACCCATGTTGAATGTAATGCCAATAATATGAAGATAGAAGATGATAGTGTTTCTGGTTCTCTTCCATTTAATCTTTGTGAAGAGATTAAAAGCAGTAATGCATTATATCTTGAATCTTGCCGAAAATACACATTTAAGAAGGAAGAAGAGATGAGTTGTATCAAAGAACGAAGACAGGAAGTGCGCTCAATTTTGTCTGAAGCTCCTGTTCGATCACTTGAGGAACCATTTTTTTGGGTTTCAACAGATTGGCTTCGTCAGTGGGCTGACAACATTACTCCACCTGTTCTTGACAACAGCTCCATCCAATGCATGCATGGAAAGGTTCCAGCATCTAAGGTTGGCTCCATGAAGCGGTTCTCAGCTGAAGCTTGGACCAAGTTGTTCTCTAAGCACAATGGGGGGCCAATTCTGACCAATGATGACTCCTGCACGATTTGCCTTATTGATGGGGCTCGAGATGTGGTCTCTGCTGACAGCTATAGGGATAGGAGAATATTAATGAAGCAAGTTGCTGAGGATGCCATTGCAGGGAGGTGTTCAGATGGAACATACTATGTTTCTAGATCATGGTTGCAGCAGTGGCTTAAAAGAAAAATTCTTGATGCTCCATCTGAAGCTGATGCAGGACCAACAGTTTCAATCAGGTGTCCTCATGGACAGCTTTTGCCTGAGCAAGCCCCTGGTGCTAAGAGATTGCTTATTCCAGAGATCCTCTGGCTCTTCCTTTATCAAGATGCTTTAACAGTAAAACCTGCTGAGGACCTGGGTTGTTCAACTTTTCTCTCAGACTCTCTACAGTGTTCTGAGTGCAGTGATGAACTATCTGAAGTTGCATGCATGGAGGATTCTTTAAGATTGGTCAGGGAAAAACAGCGCCAGACTCATGATAAATTGGCTGCCGGGAAAAGTATTCCTCTTTCTCTGCATTGCAAGTATTACTTGATACCCTATTCTTGGCTTTCAAAATGGAGAACCTACATCAACGCAGCCGGAAGGAATATTTCTTCAGTAGAGAAACCGGAAACATTAGATGGCATCATGGATTTGATCAAGTGTGAAAAGCACTCACGACTTCTAGAAAGGCCTGTTGATCTGGTCTGTAAACGTGGTTTGATTTCACAAAAGTCTTCCCCTGTGGATGGGTTAATATTCATTACTGAGAGTGACTGGAAATCCTTCTGTGAGGAATGGGGTGGTATTGAGGAAAAAGGTGCATCTGCTGAAATCAAGTTAAGTAATACTGAAGGAAATAACTTGGCAGAGTCCTCTGATGATATGCAAATCTGTGAGGAGGACTTGAGTACTCCAAATCTCGTGAATAGTGAAGTTGATTCTAGATCGCTTGTGATTAGGACTTTCCCTGAGATATGTGAGGACTGCATTGGAGAGAAAGAAAGCAGGGAGCTAATGCGAAAGCTTGAGTACTGCAATGAGGATATATATGTATACTTGGTACATGGCAAGGAAGCTCCAAAATATATTTTACAAGCATCTGAGACTAGTTTTGATCCAGATCGCCGAGTTTCCAAGCGCTCTCGAAAGACAAACACCGGAGATCAAATAAGTTTGAAAGTCTCTGGTTCTACATCGATATACCAGTTAAAAATGATGATATGGGAATCTTTTGGGGTTGTTAAGGAAAACCAGATACTTCACAAAGGCACCCGAATAATTGATAGTGAATGTGCTACTCTGGCAGACTTGAACATATTCCCAGGGGATAAGCTTTGGGTGACTGATTCAGAAGTCCATGAGAACCGAGATATTGCTGATGAGCTTTCTGACCAAAAAATGGATGTTCAACACACTGAAGAGGGTTTTCGAGGGACACTTTTGACGACAAATATCCCATCCCAAGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1086

Amino Acids

122.21

Weight (kDa)

5.45

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 107 - 453 1.7e-51 Ubiquitin carboxyl-terminal hydrolase
UCH_1 PF13423 107 - 382 7.2e-17 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 878
Acc36I ACCTGC 1 cut(s) 2155
AccB1I GGYRCC 1 cut(s) 3056
AccB7I CCANNNNNTGG 1 cut(s) 3187
AccI GTMKAC 1 cut(s) 2841
AciI CCGC 2 cut(s) 79, 1747
AclI AACGTT 2 cut(s) 572, 595
AclWI GGATC 3 cut(s) 300, 2098, 2897
AcoI YGGCCR 2 cut(s) 8, 1078
AcsI RAATTY 7 cut(s) 84, 135, 563, 615, 898, 1127, 1989
AfaI GTAC 5 cut(s) 16, 981, 2698, 2819, 2850
AfeI AGCGCT 1 cut(s) 2927
AfiI CCNNNNNNNGG 8 cut(s) 218, 277, 289, 1746, 1923, 2349, 2534, 3187
AflII CTTAAG 1 cut(s) 908
AflIII ACRYGT 2 cut(s) 344, 667
AhlI ACTAGT 2 cut(s) 1307, 2894
AjnI CCWGG 6 cut(s) 111, 973, 1373, 2074, 2157, 3109
AloI GAACNNNNNNTCC 2 cut(s) 1171, 1203
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 6 cut(s) 807, 1150, 1316, 1864, 2885, 2974
AlwI GGATC 3 cut(s) 300, 2098, 2897
Ama87I CYCGRG 1 cut(s) 1848
Aor51HI AGCGCT 1 cut(s) 2927
AoxI GGCC 6 cut(s) 8, 274, 322, 1078, 1796, 2477
ApeKI GCWGC 4 cut(s) 159, 1969, 2291, 2381
ApoI RAATTY 7 cut(s) 84, 135, 563, 615, 898, 1127, 1989
AseI ATTAAT 1 cut(s) 1892
Asp700I GAANNNNTTC 4 cut(s) 804, 1748, 2570, 3104
AspLEI GCGC 4 cut(s) 879, 1578, 2271, 2928
AspS9I GGNCC 6 cut(s) 275, 280, 1767, 1796, 2021, 2155
AsuC2I CCSGG 2 cut(s) 278, 2296
AsuHPI GGTGA 6 cut(s) 68, 110, 1154, 1274, 1274, 3139
AvaI CYCGRG 1 cut(s) 1848
AvaII GGWCC 4 cut(s) 280, 1767, 2021, 2155
BalI TGGCCA 1 cut(s) 1080
BanI GGYRCC 1 cut(s) 3056
BanII GRGCYC 1 cut(s) 1849
BauI CACGAG 1 cut(s) 2708
BbsI GAAGAC 5 cut(s) 254, 729, 1115, 1570, 2514
Bbv12I GWGCWC 1 cut(s) 683
BbvCI CCTCAGC 2 cut(s) 1908, 2151
BbvI GCAGC 4 cut(s) 146, 1981, 2278, 2393
BccI CCATC 9 cut(s) 1234, 1264, 1703, 1835, 1931, 2011, 2420, 2528, 3253
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 6 cut(s) 113, 975, 1375, 2076, 2159, 3111
BclI TGATCA 2 cut(s) 1279, 2442
BcnI CCSGG 2 cut(s) 278, 2296
BcoDI GTCTC 6 cut(s) 807, 1150, 1316, 1864, 2885, 2974
BcuI ACTAGT 2 cut(s) 1307, 2894
BfaI CTAG 6 cut(s) 1185, 1308, 1956, 2471, 2730, 2895
BfmI CTRYAG 4 cut(s) 318, 1065, 1873, 2189
BfoI RGCGCY 2 cut(s) 2272, 2929
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 2155
BglII AGATCT 1 cut(s) 643
BisI GCNGC 4 cut(s) 160, 1970, 2292, 2382
BlsI GCNGC 4 cut(s) 161, 1971, 2293, 2383
BmcAI AGTACT 4 cut(s) 16, 981, 2698, 2819
Bme1390I CCNGG 8 cut(s) 113, 278, 975, 1375, 2076, 2159, 2296, 3111
Bme18I GGWCC 4 cut(s) 280, 1767, 2021, 2155
BmeT110I CYCGRG 1 cut(s) 1848
BmgT120I GGNCC 6 cut(s) 275, 280, 1767, 1796, 2021, 2155
BmiI GGNNCC 6 cut(s) 282, 1617, 1719, 1738, 1797, 3058
BmrFI CCNGG 8 cut(s) 113, 278, 975, 1375, 2076, 2159, 2296, 3111
BpiI GAAGAC 5 cut(s) 254, 729, 1115, 1570, 2514
BplI GAGNNNNNCTC 2 cut(s) 1130, 1162
BpmI CTGGAG 2 cut(s) 350, 996
Bpu10I CCTNAGC 3 cut(s) 1908, 2064, 2151
BpuEI CTTGAG 3 cut(s) 1631, 2713, 2834
BpuMI CCSGG 2 cut(s) 278, 2296
Bsa29I ATCGAT 1 cut(s) 2984
BsaBI GATNNNNATC 2 cut(s) 1278, 2907
BsaI GGTCTC 1 cut(s) 1864
BsaJI CCNNGG 6 cut(s) 271, 652, 2074, 2158, 3109, 3110
BsaWI WCCGGW 2 cut(s) 2413, 2945
BsaXI ACNNNNNCTCC 2 cut(s) 1676, 1706
Bsc4I CCNNNNNNNGG 8 cut(s) 218, 277, 289, 1746, 1923, 2349, 2534, 3187
Bse118I RCCGGY 3 cut(s) 6, 145, 439
Bse1I ACTGG 3 cut(s) 367, 2567, 2992
Bse3DI GCAATG 5 cut(s) 881, 1124, 1917, 2320, 2830
Bse8I GATNNNNATC 2 cut(s) 1278, 2907
BseBI CCWGG 6 cut(s) 113, 975, 1375, 2076, 2159, 3111
BseCI ATCGAT 1 cut(s) 2984
BseDI CCNNGG 6 cut(s) 271, 652, 2074, 2158, 3109, 3110
BseGI GGATG 8 cut(s) 506, 775, 1108, 1695, 1918, 2539, 3196, 3245
BseJI GATNNNNATC 2 cut(s) 1278, 2907
BseLI CCNNNNNNNGG 8 cut(s) 218, 277, 289, 1746, 1923, 2349, 2534, 3187
BseMI GCAATG 5 cut(s) 881, 1124, 1917, 2320, 2830
BseNI ACTGG 3 cut(s) 367, 2567, 2992
BseRI GAGGAG 1 cut(s) 2699
BseXI GCAGC 4 cut(s) 146, 1981, 2278, 2393
BsgI GTGCAG 2 cut(s) 1807, 2224
BshFI GGCC 6 cut(s) 10, 276, 324, 1080, 1798, 2479
BshNI GGYRCC 1 cut(s) 3056
BshVI ATCGAT 1 cut(s) 2984
BsiHKAI GWGCWC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 1848
BsiSI CCGG 8 cut(s) 7, 146, 278, 440, 2295, 2385, 2414, 2946
BslFI GGGAC 3 cut(s) 1171, 1192, 3235
BslI CCNNNNNNNGG 8 cut(s) 218, 277, 289, 1746, 1923, 2349, 2534, 3187
BsmAI GTCTC 6 cut(s) 807, 1150, 1316, 1864, 2885, 2974
BsmFI GGGAC 3 cut(s) 1171, 1192, 3235
BsmI GAATGC 1 cut(s) 1369
BsnI GGCC 6 cut(s) 10, 276, 324, 1080, 1798, 2479
Bso31I GGTCTC 1 cut(s) 1864
BsoBI CYCGRG 1 cut(s) 1848
Bsp1286I GDGCHC 2 cut(s) 683, 1849
BspACI CCGC 2 cut(s) 79, 1747
BspANI GGCC 6 cut(s) 10, 276, 324, 1080, 1798, 2479
BspDI ATCGAT 1 cut(s) 2984
BspHI TCATGA 2 cut(s) 559, 2278
BspLI GGNNCC 6 cut(s) 282, 1617, 1719, 1738, 1797, 3058
BspMAI CTGCAG 2 cut(s) 322, 1069
BspMI ACCTGC 1 cut(s) 2155
BspPI GGATC 3 cut(s) 300, 2098, 2897
BspQI GCTCTTC 2 cut(s) 795, 2120
BspT107I GGYRCC 1 cut(s) 3056
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 1864
BsrDI GCAATG 5 cut(s) 881, 1124, 1917, 2320, 2830
BsrFI RCCGGY 3 cut(s) 6, 145, 439
BsrI ACTGG 3 cut(s) 367, 2567, 2992
BssAI RCCGGY 3 cut(s) 6, 145, 439
BssECI CCNNGG 6 cut(s) 271, 652, 2074, 2158, 3109, 3110
BssNAI GTATAC 1 cut(s) 2842
BssSI CACGAG 1 cut(s) 2708
BssT1I CCWWGG 1 cut(s) 271
Bst1107I GTATAC 1 cut(s) 2842
Bst2BI CACGAG 1 cut(s) 2708
Bst2UI CCWGG 6 cut(s) 113, 975, 1375, 2076, 2159, 3111
Bst4CI ACNGT 9 cut(s) 129, 314, 474, 557, 892, 1076, 2029, 2140, 2193
Bst6I CTCTTC 6 cut(s) 795, 1458, 1467, 1533, 2120, 3201
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 1830
BstC8I GCNNGC 6 cut(s) 8, 322, 1199, 1706, 2070, 2230
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 8 cut(s) 506, 775, 1108, 1695, 1918, 2539, 3196, 3245
BstH2I RGCGCY 2 cut(s) 2272, 2929
BstHHI GCGC 4 cut(s) 879, 1578, 2271, 2928
BstMAI GTCTC 6 cut(s) 807, 1150, 1316, 1864, 2885, 2974
BstMWI GCNNNNNNNGC 7 cut(s) 883, 1006, 1830, 1913, 1975, 2078, 3089
BstNI CCWGG 6 cut(s) 113, 975, 1375, 2076, 2159, 3111
BstNSI RCATGY 5 cut(s) 348, 671, 1145, 1708, 2232
BstSCI CCNGG 8 cut(s) 111, 276, 973, 1373, 2074, 2157, 2294, 3109
BstSFI CTRYAG 4 cut(s) 318, 1065, 1873, 2189
BstV1I GCAGC 4 cut(s) 146, 1981, 2278, 2393
BstV2I GAAGAC 5 cut(s) 254, 729, 1115, 1570, 2514
BstX2I RGATCY 3 cut(s) 292, 643, 2103
BstXI CCANNNNNNTGG 1 cut(s) 1626
BstYI RGATCY 3 cut(s) 292, 643, 2103
BstZ17I GTATAC 1 cut(s) 2842
Bsu15I ATCGAT 1 cut(s) 2984
BsuRI GGCC 6 cut(s) 10, 276, 324, 1080, 1798, 2479
BsuTUI ATCGAT 1 cut(s) 2984
BtgI CCRYGG 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 928
BtsCI GGATG 8 cut(s) 506, 775, 1108, 1695, 1918, 2539, 3196, 3245
BtsI GCAGTG 2 cut(s) 1979, 2212
BtsIMutI CAGTG 9 cut(s) 125, 374, 799, 1081, 1658, 1979, 2198, 2212, 3201
BveI ACCTGC 1 cut(s) 2155
Cac8I GCNNGC 6 cut(s) 8, 322, 1199, 1706, 2070, 2230
CciI TCATGA 2 cut(s) 559, 2278
CfoI GCGC 4 cut(s) 879, 1578, 2271, 2928
Cfr10I RCCGGY 3 cut(s) 6, 145, 439
Cfr13I GGNCC 6 cut(s) 275, 280, 1767, 1796, 2021, 2155
ClaI ATCGAT 1 cut(s) 2984
Csp6I GTAC 5 cut(s) 15, 980, 2697, 2818, 2849
CviQI GTAC 5 cut(s) 15, 980, 2697, 2818, 2849
EaeI YGGCCR 2 cut(s) 8, 1078
Eam1104I CTCTTC 6 cut(s) 795, 1458, 1467, 1533, 2120, 3201
EarI CTCTTC 6 cut(s) 795, 1458, 1467, 1533, 2120, 3201
Eco130I CCWWGG 1 cut(s) 271
Eco147I AGGCCT 2 cut(s) 324, 2479
Eco24I GRGCYC 1 cut(s) 1849
Eco31I GGTCTC 1 cut(s) 1864
Eco47I GGWCC 4 cut(s) 280, 1767, 2021, 2155
Eco47III AGCGCT 1 cut(s) 2927
Eco88I CYCGRG 1 cut(s) 1848
EcoO109I RGGNCCY 1 cut(s) 2155
EcoRII CCWGG 6 cut(s) 111, 973, 1373, 2074, 2157, 3109
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 5 cut(s) 1345, 1495, 1706, 1710, 2234
EcoT38I GRGCYC 1 cut(s) 1849
ErhI CCWWGG 1 cut(s) 271
FalI AAGNNNNNCTT 2 cut(s) 2318, 2350
FaqI GGGAC 3 cut(s) 1171, 1192, 3235
FbaI TGATCA 2 cut(s) 1279, 2442
FblI GTMKAC 1 cut(s) 2841
Fnu4HI GCNGC 4 cut(s) 160, 1970, 2292, 2382
FokI GGATG 8 cut(s) 493, 782, 1115, 1682, 1925, 2546, 3203, 3232
FriOI GRGCYC 1 cut(s) 1849
Fsp4HI GCNGC 4 cut(s) 160, 1970, 2292, 2382
FspBI CTAG 6 cut(s) 1185, 1308, 1956, 2471, 2730, 2895
FspI TGCGCA 1 cut(s) 878
GlaI GCGC 4 cut(s) 878, 1577, 2270, 2927
GluI GCNGC 4 cut(s) 160, 1970, 2292, 2382
GsuI CTGGAG 2 cut(s) 350, 996
HaeII RGCGCY 2 cut(s) 2272, 2929
HaeIII GGCC 6 cut(s) 10, 276, 324, 1080, 1798, 2479
HapII CCGG 8 cut(s) 7, 146, 278, 440, 2295, 2385, 2414, 2946
HhaI GCGC 4 cut(s) 879, 1578, 2271, 2928
Hin6I GCGC 4 cut(s) 877, 1576, 2269, 2926
HinP1I GCGC 4 cut(s) 877, 1576, 2269, 2926
HincII GTYRAC 2 cut(s) 1072, 1222
HindII GTYRAC 2 cut(s) 1072, 1222
HindIII AAGCTT 4 cut(s) 705, 1761, 2810, 3119
HpaI GTTAAC 2 cut(s) 1072, 1222
HpaII CCGG 8 cut(s) 7, 146, 278, 440, 2295, 2385, 2414, 2946
HphI GGTGA 6 cut(s) 68, 110, 1154, 1274, 1274, 3139
Hpy166II GTNNAC 4 cut(s) 1072, 1222, 2498, 2842
Hpy8I GTNNAC 4 cut(s) 1072, 1222, 2498, 2842
HpyCH4III ACNGT 9 cut(s) 129, 314, 474, 557, 892, 1076, 2029, 2140, 2193
HpyCH4IV ACGT 3 cut(s) 572, 595, 2500
HpyF10VI GCNNNNNNNGC 7 cut(s) 883, 1006, 1830, 1913, 1975, 2078, 3089
HpySE526I ACGT 3 cut(s) 572, 595, 2500
HspAI GCGC 4 cut(s) 877, 1576, 2269, 2926
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Ksp22I TGATCA 2 cut(s) 1279, 2442
KspAI GTTAAC 2 cut(s) 1072, 1222
LguI GCTCTTC 2 cut(s) 795, 2120
LmnI GCTCC 6 cut(s) 1600, 1697, 1742, 2005, 2797, 2869
Lsp1109I GCAGC 4 cut(s) 146, 1981, 2278, 2393
MaeI CTAG 6 cut(s) 1185, 1308, 1956, 2471, 2730, 2895
MaeII ACGT 3 cut(s) 572, 595, 2500
MaeIII GTNAC 5 cut(s) 56, 663, 670, 2558, 3127
MflI RGATCY 3 cut(s) 292, 643, 2103
MhlI GDGCHC 2 cut(s) 683, 1849
MlsI TGGCCA 1 cut(s) 1080
MluNI TGGCCA 1 cut(s) 1080
MlyI GAGTC 8 cut(s) 497, 692, 842, 1153, 1811, 2177, 2269, 2666
MmeI TCCRAC 3 cut(s) 206, 513, 570
Mox20I TGGCCA 1 cut(s) 1080
Mph1103I ATGCAT 5 cut(s) 1345, 1495, 1706, 1710, 2234
MroNI GCCGGC 1 cut(s) 6
MroXI GAANNNNTTC 4 cut(s) 804, 1748, 2570, 3104
MscI TGGCCA 1 cut(s) 1080
Msp20I TGGCCA 1 cut(s) 1080
MspA1I CMGCKG 2 cut(s) 1043, 1757
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 8 cut(s) 7, 146, 278, 440, 2295, 2385, 2414, 2946
MspR9I CCNGG 8 cut(s) 113, 278, 975, 1375, 2076, 2159, 2296, 3111
Mva1269I GAATGC 1 cut(s) 1369
MvaI CCWGG 6 cut(s) 113, 975, 1375, 2076, 2159, 3111
MwoI GCNNNNNNNGC 7 cut(s) 883, 1006, 1830, 1913, 1975, 2078, 3089
NaeI GCCGGC 1 cut(s) 8
NciI CCSGG 2 cut(s) 278, 2296
NgoMIV GCCGGC 1 cut(s) 6
NlaIV GGNNCC 6 cut(s) 282, 1617, 1719, 1738, 1797, 3058
NmeAIII GCCGAG 2 cut(s) 439, 2939
NmuCI GTSAC 4 cut(s) 56, 663, 2558, 3127
NsbI TGCGCA 1 cut(s) 878
NsiI ATGCAT 5 cut(s) 1345, 1495, 1706, 1710, 2234
NspI RCATGY 5 cut(s) 348, 671, 1145, 1708, 2232
PaeI GCATGC 2 cut(s) 1708, 2232
PaeR7I CTCGAG 1 cut(s) 1848
PagI TCATGA 2 cut(s) 559, 2278
PasI CCCWGGG 1 cut(s) 3110
PceI AGGCCT 2 cut(s) 324, 2479
PciI ACATGT 2 cut(s) 344, 667
PciSI GCTCTTC 2 cut(s) 795, 2120
PctI GAATGC 1 cut(s) 1369
PdiI GCCGGC 1 cut(s) 8
PdmI GAANNNNTTC 4 cut(s) 804, 1748, 2570, 3104
PflMI CCANNNNNTGG 1 cut(s) 3187
PfoI TCCNGGA 2 cut(s) 973, 1373
PkrI GCNGC 4 cut(s) 161, 1971, 2293, 2383
PleI GAGTC 8 cut(s) 497, 692, 841, 1153, 1811, 2177, 2269, 2665
PpsI GAGTC 8 cut(s) 497, 692, 841, 1153, 1811, 2177, 2269, 2665
PpuMI RGGWCCY 1 cut(s) 2155
PscI ACATGT 2 cut(s) 344, 667
PshBI ATTAAT 1 cut(s) 1892
Psp1406I AACGTT 2 cut(s) 572, 595
Psp5II RGGWCCY 1 cut(s) 2155
Psp6I CCWGG 6 cut(s) 111, 973, 1373, 2074, 2157, 3109
PspGI CCWGG 6 cut(s) 111, 973, 1373, 2074, 2157, 3109
PspN4I GGNNCC 6 cut(s) 282, 1617, 1719, 1738, 1797, 3058
PspPI GGNCC 6 cut(s) 275, 280, 1767, 1796, 2021, 2155
PspPPI RGGWCCY 1 cut(s) 2155
PstI CTGCAG 2 cut(s) 322, 1069
PsuI RGATCY 3 cut(s) 292, 643, 2103
PvuII CAGCTG 2 cut(s) 1043, 1757
RsaI GTAC 5 cut(s) 16, 981, 2698, 2819, 2850
RsaNI GTAC 5 cut(s) 15, 980, 2697, 2818, 2849
SapI GCTCTTC 2 cut(s) 795, 2120
SatI GCNGC 4 cut(s) 160, 1970, 2292, 2382
Sau96I GGNCC 6 cut(s) 275, 280, 1767, 1796, 2021, 2155
SbfI CCTGCAGG 1 cut(s) 322
ScaI AGTACT 4 cut(s) 16, 981, 2698, 2819
SchI GAGTC 8 cut(s) 497, 692, 842, 1153, 1811, 2177, 2269, 2666
ScrFI CCNGG 8 cut(s) 113, 278, 975, 1375, 2076, 2159, 2296, 3111
SdaI CCTGCAGG 1 cut(s) 322
SduI GDGCHC 2 cut(s) 683, 1849
SfcI CTRYAG 4 cut(s) 318, 1065, 1873, 2189
Sfr274I CTCGAG 1 cut(s) 1848
SinI GGWCC 4 cut(s) 280, 1767, 2021, 2155
SlaI CTCGAG 1 cut(s) 1848
SmlI CTYRAG 5 cut(s) 908, 1610, 1848, 2692, 2813
SmoI CTYRAG 5 cut(s) 908, 1610, 1848, 2692, 2813
SpeI ACTAGT 2 cut(s) 1307, 2894
SphI GCATGC 2 cut(s) 1708, 2232
Sse8387I CCTGCAGG 1 cut(s) 322
SseBI AGGCCT 2 cut(s) 324, 2479
SsiI CCGC 2 cut(s) 79, 1747
SspI AATATT 5 cut(s) 75, 824, 1890, 2395, 2544
SspMI CTAG 6 cut(s) 1185, 1308, 1956, 2471, 2730, 2895
StuI AGGCCT 2 cut(s) 324, 2479
StyD4I CCNGG 8 cut(s) 111, 276, 973, 1373, 2074, 2157, 2294, 3109
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 9 cut(s) 129, 314, 474, 557, 892, 1076, 2029, 2140, 2193
TaiI ACGT 3 cut(s) 575, 598, 2503
TaqI TCGA 6 cut(s) 862, 1603, 1849, 2932, 2984, 3217
TatI WGTACW 4 cut(s) 14, 979, 2696, 2817
TscAI CASTG 9 cut(s) 132, 374, 799, 1081, 1658, 1979, 2198, 2212, 3208
TseFI GTSAC 4 cut(s) 56, 663, 2558, 3127
TseI GCWGC 4 cut(s) 159, 1969, 2291, 2381
Tsp45I GTSAC 4 cut(s) 56, 663, 2558, 3127
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 9 cut(s) 132, 374, 799, 1081, 1658, 1979, 2198, 2212, 3208
Van91I CCANNNNNTGG 1 cut(s) 3187
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 4 cut(s) 280, 1767, 2021, 2155
VspI ATTAAT 1 cut(s) 1892
XapI RAATTY 7 cut(s) 84, 135, 563, 615, 898, 1127, 1989
XbaI TCTAGA 3 cut(s) 1955, 2470, 2729
XceI RCATGY 5 cut(s) 348, 671, 1145, 1708, 2232
XcmI CCANNNNNNNNNTGG 2 cut(s) 1706, 2106
XhoI CTCGAG 1 cut(s) 1848
XmiI GTMKAC 1 cut(s) 2841
XmnI GAANNNNTTC 4 cut(s) 804, 1748, 2570, 3104
XspI CTAG 6 cut(s) 1185, 1308, 1956, 2471, 2730, 2895
ZrmI AGTACT 4 cut(s) 16, 981, 2698, 2819
Zsp2I ATGCAT 5 cut(s) 1345, 1495, 1706, 1710, 2234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.