Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004481

Physical Location & Seq

Genomic Coordinates Forward (+)

25701967 .. 25703085

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1162600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTAAGCGACTGACTGAGGAGGCAGAGAGATACATTGAGGACTTCATTTCAAATGTGGAAGATACAGATATATCATCTATTGACGGAGAAAGGAGCGATACAAGTTCAAGTATAGGAGGAATAACAAAGCACGAAACTTATCTGAGTCCAGCTTTTTCTACTCCTCTTCCTGTCGCAATGGATGGGGTTGTTTTACCTTGGTTGCTGTGGGAGACTAGTAATGATGCTACGCCAATAGGATGCAAGAATAAGAACGAACCACAGGGAGTGATAAAAATGCAAGATCAAAGTAATCAATCTGTTAGCAGCCATGGAAGCTGGAGCCCTGGAATAGTTGACTCCCTGTCAATTAACATGGAAGATGCAGGAAGTAAAGTTGGAGGATATAGAAGCTACGAGTGCCAGTCACGCCTTGGTGGGTCAAATGGTTCACAGTTCGACATGGAAGAGTATCTCCAGCTCAAGAACAATGACGATTTACTCTTTGAAAGGTTGAAGCAACAACGGAGAATTAGTTCCGGTGGTCTCCTGCTATGTAACCGGATGCTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

4.65

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50350
fragaria_vesca	FvH4_5g07650
malus_domestica	MD06G1148700.v1.1 MD14G1162500.v1.1 MD14G1162600.v1.1
prunus_persica	Prupe.5G155700_v2.0.a1 Prupe.5G155700_v2.0.a1
pyrus_communis	pycom06g13810 pycom14g13540
rosa_chinensis	RchiOBHm_Chr1g0380401 RchiOBHm_Chr7g0190821
rosa_laevigata	RLG00000004491 RLG00000026306
rosa_multiflora	Rmu_sc0002819.1_g000002 Rmu_sc0005371.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264270 Rroxscaffold_4G00279420
rosa_rugosa	Rorug01G0420500 Rorug01G0420600 Rorug01G0420700 Rorug06G0507400
rosa_samantha	Rh1AG444900 Rh1BG400000 Rh1CG414700 Rh1DG430000 Rh5AG542600 Rh7AG114000 Rh7BG116600 Rh7CG119300 Rh7DG117800
rosa_wichuraiana	Rw1G038720 Rw7G009950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	54, 111, 491, 499
AhdI	GACNNNNNGTC	1 cut(s)	346
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	328
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	4 cut(s)	155, 321, 396, 463
AluI	AGCT	4 cut(s)	155, 321, 396, 463
Alw26I	GTCTC	2 cut(s)	209, 533
ApeKI	GCWGC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	209, 533
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	330
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	4 cut(s)	217, 233, 355, 537
BpmI	CTGGAG	2 cut(s)	343, 443
BpuEI	CTTGAG	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	4 cut(s)	200, 313, 328, 415
BsaWI	WCCGGW	2 cut(s)	521, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	4 cut(s)	200, 313, 328, 415
BseGI	GGATG	3 cut(s)	190, 248, 552
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	9, 137
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	2 cut(s)	35, 156
BseXI	GCAGC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	522, 544
BsmAI	GTCTC	2 cut(s)	209, 533
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	313
BspCNI	CTCAG	2 cut(s)	10, 138
BspLI	GGNNCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	200, 313, 328, 415
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	3 cut(s)	200, 313, 415
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	2 cut(s)	174, 444
BstDEI	CTNAG	3 cut(s)	6, 18, 146
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	190, 248, 552
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	209, 533
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 402, 411
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	190, 248, 552
CviAII	CATG	3 cut(s)	314, 358, 445
CviJI	RGCY	6 cut(s)	155, 312, 321, 327, 396, 463
CviKI_1	RGCY	6 cut(s)	155, 312, 321, 327, 396, 463
DdeI	CTNAG	3 cut(s)	6, 18, 146
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	174, 444
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	2 cut(s)	174, 444
Eco130I	CCWWGG	3 cut(s)	200, 313, 415
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	3 cut(s)	200, 313, 415
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	3 cut(s)	200, 313, 415
FaeI	CATG	3 cut(s)	317, 361, 448
FaiI	YATR	7 cut(s)	74, 116, 315, 359, 390, 446, 538
FatI	CATG	3 cut(s)	313, 357, 444
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	2 cut(s)	197, 255
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	343, 443
HapII	CCGG	2 cut(s)	522, 544
Hin1II	CATG	3 cut(s)	317, 361, 448
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	148, 341
HpaII	CCGG	2 cut(s)	522, 544
Hpy166II	GTNNAC	2 cut(s)	340, 434
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	340, 434
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	246, 283, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 402, 411
HpyF3I	CTNAG	3 cut(s)	6, 18, 146
Hsp92II	CATG	3 cut(s)	317, 361, 448
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	96, 324
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	4 cut(s)	217, 233, 355, 537
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	408, 539
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	74, 161, 374, 461
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	351, 513
MlyI	GAGTC	2 cut(s)	157, 335
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	6 cut(s)	13, 16, 34, 113, 177, 377
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	1 cut(s)	354
MspI	CCGG	2 cut(s)	522, 544
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	318, 402, 411
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	317, 361, 448
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	2 cut(s)	156, 335
PpsI	GAGTC	2 cut(s)	156, 335
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	157, 335
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	6 cut(s)	157, 202, 323, 398, 465, 497
SfaNI	GCATC	4 cut(s)	217, 233, 355, 537
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	2 cut(s)	351, 513
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	3 cut(s)	200, 313, 415
TaaI	ACNGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	441
TasI	AATT	2 cut(s)	351, 513
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	2 cut(s)	102, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.