Rh7CG119300

chitin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004481
Physical Location & Seq
Reverse (-)
9122414 .. 9126091
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG119300.1

Sequence Viewer

Length: 1590 bp
ATGGCGACCTCGGCGTTCAAATCGACGACGAAGCGGACGCCGATCGGGAGCTCTCCGGCTCCGGCGGAGGACTCGTCTTCGGTTAATCGGTCACACCGGCGCTCGCGGAGCCTCAGCTGCTTCTCGCGCCGGCTGCCGGAGCCGCCGGCCGAGGAGTTTGAAGTCAATCCGACTCCCAGGAGGAAGTTTGTGAACACGGTCAGGGGCTCGGGGTTCCCGGAGATTAGTCTTGATGACTTGGCGATTGAGCTGTTTGATTCTGGCTCGGATGAGAGAGGAGGACGCTCGGCGTTGCGGAGTTCCGAAACTACCCCTGCCCAGAGGCGGGGGAGGTCGGTGTCGAGGCACGGCCCGAGGGTGAGCGGCGGCGGTGGTGAGACGAGGGGCTGTGCTGGTAATAGCTCAGGTGGAGGGAGGGTAGTTTCGGAAAGTAAGGGAAATTCGAGGCAAAGGCGATCGGTTTCTGTTGCTCGGTATCAGATGAGCGATTCCGAGAGTGATCTCGATCATACTCATAATCGTAGCACTGCTAAGTCGAAGAACTTCACTAGCAGTAACAACCAGACGCCCTTGTCCCGTAAGTCATTGGATTCAAATTATAGGCCAGGATTGAGAAGGTCTCTTAGCCAAAAAGATTTGAAGTGCCATGACGGTTACTCTAGCCAGTCTTCTGTCCTAACTGATGATGAGGGGAAGGATGCTTATATCTATAAAAATGGGGCTGAGAAGACTATACGAGCTGTATATTCAGAGAAGAAGGCAGAGCACCCTGCTGGTAATGATATGAAAAGTGGACTTTATGAAGTAATGCGAAAAGAACTTAGACATGCTGTGGAAGAGATTAGGACAGAACTTGAACAGGAAAAGGGCAAAACAAAATCTACTGTTCTAGCACCTGGTGATTCCGTGCGATCTAACGTACTTCAGGCTGTTTCTTCATTCAGGAAGAATTATTCTTCCAAATTGGAACAGTCAGAAAAGCGTAAACAAGATTTATTAGCAGAAATAGTGCTGGAGGAACAACACAGTAGGGAACTGTCAAAGATTGTAAAAGAATTGCTCCCTGAGCCAAAGAAAATTGTCAGTCCAGACAGACCATCACGAACTAGAAGGAGGAGCAATGACAAAGGTAGGATGTCTAAGCGATTGACTGAGGAAGCAGAAAGATATATTGAGGACTTCATTTCAAATGTTGAAGACACAGATATATCATCACTTGATGGTGAAAGAAGTGATACAAGTTCGAGCTTAGGAGGAATAATGAAGGGCGAAACTTTTCAGAGTCCAGCCATGTCAACTCCTCCTCCTCCTGTTTTCATGGACGGCGTTGTACTGCCTTGGTTGCGGTGGGAGACTAGTAATGATGGTACTCCTATGGGGTGCAGGAATAAGACTGAACCACCAATGACCCCGAAGTCTTTTTCATGGGGTGCTTCTCAGGTAATATTTGCAAGTTATGCGTCCCCATTACAGTTTTTGATTGCCAGTGTGGCATGTCTTGTTTTTCATTCATTGTTATCTCTAGTAATATCGGCCTCAAATTTCTTTGAAATTCAATTTACAGGAAGTGACCAATGCACAAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

529

Amino Acids

58.5

Weight (kDa)

9.35

Isoelectric Point (pI)

73.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 571, 1414
AccBSI CCGCTC 1 cut(s) 363
AccII CGCG 2 cut(s) 106, 127
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 3 cut(s) 439, 1540, 1551
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 2 cut(s) 38, 566
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 3 cut(s) 921, 1332, 1369
AfiI CCNNNNNNNGG 3 cut(s) 136, 324, 325
AgsI TTSAA 9 cut(s) 19, 161, 594, 640, 857, 1188, 1196, 1550, 1556
AhlI ACTAGT 1 cut(s) 1355
AjnI CCWGG 3 cut(s) 176, 604, 895
AluBI AGCT 6 cut(s) 51, 117, 250, 402, 740, 1248
AluI AGCT 6 cut(s) 51, 117, 250, 402, 740, 1248
Alw21I GWGCWC 2 cut(s) 53, 768
Alw26I GTCTC 3 cut(s) 371, 624, 1346
Ama87I CYCGRG 2 cut(s) 208, 352
AoxI GGCC 4 cut(s) 147, 349, 602, 1533
ApeKI GCWGC 2 cut(s) 117, 133
ApoI RAATTY 3 cut(s) 439, 1540, 1551
Asp700I GAANNNNTTC 2 cut(s) 542, 1275
AspLEI GCGC 2 cut(s) 102, 129
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 370, 386, 911, 1235
AvaI CYCGRG 2 cut(s) 208, 352
BanII GRGCYC 2 cut(s) 53, 209
BbsI GAAGAC 4 cut(s) 69, 660, 734, 1203
Bbv12I GWGCWC 2 cut(s) 53, 768
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 104, 120
BccI CCATC 3 cut(s) 1105, 1214, 1358
BceAI ACGGC 2 cut(s) 364, 1339
BciT130I CCWGG 3 cut(s) 178, 606, 897
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 3 cut(s) 371, 624, 1346
BcuI ACTAGT 1 cut(s) 1355
BfaI CTAG 6 cut(s) 549, 660, 890, 1107, 1356, 1523
BfoI RGCGCY 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 1490
BisI GCNGC 5 cut(s) 118, 134, 143, 364, 367
BlsI GCNGC 5 cut(s) 119, 135, 144, 365, 368
Bme1390I CCNGG 4 cut(s) 178, 218, 606, 897
BmeT110I CYCGRG 2 cut(s) 208, 352
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 4 cut(s) 60, 110, 141, 215
BmrFI CCNGG 4 cut(s) 178, 218, 606, 897
BmsI GCATC 1 cut(s) 688
BpiI GAAGAC 4 cut(s) 69, 660, 734, 1203
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 4 cut(s) 113, 403, 1065, 1249
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 38, 566
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 5 cut(s) 9, 150, 176, 353, 1337
BsaXI ACNNNNNCTCC 6 cut(s) 59, 89, 402, 432, 1288, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 324, 325
Bse118I RCCGGY 3 cut(s) 96, 129, 145
Bse1I ACTGG 2 cut(s) 664, 1485
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 3 cut(s) 178, 606, 897
BseDI CCNNGG 5 cut(s) 9, 150, 176, 353, 1337
BseGI GGATG 3 cut(s) 274, 703, 1140
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 136, 324, 325
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 6 cut(s) 127, 417, 714, 1056, 1143, 1451
BseNI ACTGG 2 cut(s) 664, 1485
BseRI GAGGAG 6 cut(s) 167, 291, 1129, 1290, 1293, 1296
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 104, 120
BsgI GTGCAG 1 cut(s) 1402
Bsh1236I CGCG 2 cut(s) 106, 127
Bsh1285I CGRYCG 3 cut(s) 45, 150, 458
BshFI GGCC 4 cut(s) 149, 351, 604, 1535
BsiEI CGRYCG 3 cut(s) 45, 150, 458
BsiHKAI GWGCWC 2 cut(s) 53, 768
BsiHKCI CYCGRG 2 cut(s) 208, 352
BsiSI CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
BslFI GGGAC 2 cut(s) 559, 1447
BslI CCNNNNNNNGG 3 cut(s) 136, 324, 325
BsmAI GTCTC 3 cut(s) 371, 624, 1346
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 559, 1447
BsnI GGCC 4 cut(s) 149, 351, 604, 1535
Bso31I GGTCTC 1 cut(s) 624
BsoBI CYCGRG 2 cut(s) 208, 352
Bsp1286I GDGCHC 3 cut(s) 53, 209, 768
Bsp143I GATC 5 cut(s) 42, 455, 499, 505, 911
BspANI GGCC 4 cut(s) 149, 351, 604, 1535
BspCNI CTCAG 6 cut(s) 126, 416, 715, 1057, 1144, 1450
BspFNI CGCG 2 cut(s) 106, 127
BspLI GGNNCC 4 cut(s) 60, 110, 141, 215
BspTNI GGTCTC 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 1126
BsrFI RCCGGY 3 cut(s) 96, 129, 145
BsrI ACTGG 2 cut(s) 664, 1485
BssAI RCCGGY 3 cut(s) 96, 129, 145
BssECI CCNNGG 5 cut(s) 9, 150, 176, 353, 1337
BssMI GATC 5 cut(s) 42, 455, 499, 505, 911
BssNI GRCGYC 2 cut(s) 38, 566
BssT1I CCWWGG 1 cut(s) 1337
Bst2UI CCWGG 3 cut(s) 178, 606, 897
Bst4CI ACNGT 7 cut(s) 199, 653, 886, 972, 1028, 1038, 1473
Bst6I CTCTTC 1 cut(s) 831
BstACI GRCGYC 2 cut(s) 38, 566
BstAPI GCANNNNNTGC 1 cut(s) 1457
BstC8I GCNNGC 3 cut(s) 104, 131, 147
BstF5I GGATG 3 cut(s) 274, 703, 1140
BstFNI CGCG 2 cut(s) 106, 127
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 129
BstKTI GATC 5 cut(s) 45, 458, 502, 508, 914
BstMAI GTCTC 3 cut(s) 371, 624, 1346
BstMBI GATC 5 cut(s) 42, 455, 499, 505, 911
BstMCI CGRYCG 3 cut(s) 45, 150, 458
BstNI CCWGG 3 cut(s) 178, 606, 897
BstNSI RCATGY 2 cut(s) 830, 1497
BstSCI CCNGG 4 cut(s) 176, 216, 604, 895
BstUI CGCG 2 cut(s) 106, 127
BstV1I GCAGC 2 cut(s) 104, 120
BstV2I GAAGAC 4 cut(s) 69, 660, 734, 1203
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 4 cut(s) 149, 351, 604, 1535
BtsCI GGATG 3 cut(s) 274, 703, 1140
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 1492
Cac8I GCNNGC 3 cut(s) 104, 131, 147
CfoI GCGC 2 cut(s) 102, 129
Cfr10I RCCGGY 3 cut(s) 96, 129, 145
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 4 cut(s) 46, 291, 574, 1449
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 3 cut(s) 920, 1331, 1368
CviAII CATG 6 cut(s) 647, 827, 1291, 1318, 1425, 1494
CviQI GTAC 3 cut(s) 920, 1331, 1368
DpnI GATC 5 cut(s) 44, 457, 501, 507, 913
DpnII GATC 5 cut(s) 42, 455, 499, 505, 911
DraIII CACNNNGTG 1 cut(s) 899
DrdI GACNNNNNNGTC 2 cut(s) 571, 1414
DseDI GACNNNNNNGTC 2 cut(s) 571, 1414
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 831
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 1337
Eco24I GRGCYC 2 cut(s) 53, 209
Eco31I GGTCTC 1 cut(s) 624
Eco52I CGGCCG 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 908
Eco88I CYCGRG 2 cut(s) 208, 352
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 176, 604, 895
EcoT14I CCWWGG 1 cut(s) 1337
EcoT38I GRGCYC 2 cut(s) 53, 209
ErhI CCWWGG 1 cut(s) 1337
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 6 cut(s) 650, 830, 1294, 1321, 1428, 1497
FaqI GGGAC 2 cut(s) 559, 1447
FatI CATG 6 cut(s) 646, 826, 1290, 1317, 1424, 1493
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 118, 134, 143, 364, 367
FokI GGATG 3 cut(s) 281, 710, 1147
FriOI GRGCYC 2 cut(s) 53, 209
Fsp4HI GCNGC 5 cut(s) 118, 134, 143, 364, 367
FspBI CTAG 6 cut(s) 549, 660, 890, 1107, 1356, 1523
GlaI GCGC 2 cut(s) 101, 128
GluI GCNGC 5 cut(s) 118, 134, 143, 364, 367
GsuI CTGGAG 1 cut(s) 1034
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 4 cut(s) 149, 351, 604, 1535
HapII CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
HgaI GACGC 4 cut(s) 46, 291, 574, 1449
HhaI GCGC 2 cut(s) 102, 129
Hin1I GRCGYC 2 cut(s) 38, 566
Hin1II CATG 6 cut(s) 650, 830, 1294, 1321, 1428, 1497
Hin6I GCGC 2 cut(s) 100, 127
HinP1I GCGC 2 cut(s) 100, 127
HincII GTYRAC 1 cut(s) 1296
HindII GTYRAC 1 cut(s) 1296
HinfI GANTC 7 cut(s) 71, 172, 257, 488, 590, 902, 1282
HpaII CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
HphI GGTGA 4 cut(s) 370, 386, 911, 1235
Hpy166II GTNNAC 4 cut(s) 193, 794, 986, 1296
Hpy188I TCNGA 9 cut(s) 171, 268, 304, 427, 480, 493, 751, 976, 1281
Hpy188III TCNNGA 6 cut(s) 46, 230, 503, 943, 1088, 1101
Hpy8I GTNNAC 4 cut(s) 193, 794, 986, 1296
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 5 cut(s) 609, 688, 751, 1104, 1258
HpyCH4III ACNGT 7 cut(s) 199, 653, 886, 972, 1028, 1038, 1473
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 3 cut(s) 1383, 1451, 1578
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 2 cut(s) 38, 566
Hsp92II CATG 6 cut(s) 650, 830, 1294, 1321, 1428, 1497
HspAI GCGC 2 cut(s) 100, 127
KroI GCCGGC 2 cut(s) 129, 145
KroNI GCCGGC 2 cut(s) 131, 147
Kzo9I GATC 5 cut(s) 42, 455, 499, 505, 911
LmnI GCTCC 6 cut(s) 48, 64, 108, 139, 1065, 1116
Lsp1109I GCAGC 2 cut(s) 104, 120
LweI GCATC 1 cut(s) 688
MabI ACCWGGT 1 cut(s) 895
MaeI CTAG 6 cut(s) 549, 660, 890, 1107, 1356, 1523
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 4 cut(s) 90, 554, 653, 1568
MalI GATC 5 cut(s) 44, 457, 501, 507, 913
MbiI CCGCTC 1 cut(s) 363
MboI GATC 5 cut(s) 42, 455, 499, 505, 911
MhlI GDGCHC 3 cut(s) 53, 209, 768
MluCI AATT 9 cut(s) 439, 595, 949, 962, 1055, 1077, 1540, 1551, 1556
MlyI GAGTC 3 cut(s) 65, 166, 1291
MmeI TCCRAC 1 cut(s) 194
MroNI GCCGGC 2 cut(s) 129, 145
MroXI GAANNNNTTC 2 cut(s) 542, 1275
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
MspR9I CCNGG 4 cut(s) 178, 218, 606, 897
MvaI CCWGG 3 cut(s) 178, 606, 897
MvnI CGCG 2 cut(s) 106, 127
NaeI GCCGGC 2 cut(s) 131, 147
NciI CCSGG 1 cut(s) 218
NdeII GATC 5 cut(s) 42, 455, 499, 505, 911
NgoMIV GCCGGC 2 cut(s) 129, 145
NlaIII CATG 6 cut(s) 650, 830, 1294, 1321, 1428, 1497
NlaIV GGNNCC 4 cut(s) 60, 110, 141, 215
NmeAIII GCCGAG 2 cut(s) 175, 266
NmuCI GTSAC 2 cut(s) 90, 1568
NspI RCATGY 2 cut(s) 830, 1497
PdiI GCCGGC 2 cut(s) 131, 147
PdmI GAANNNNTTC 2 cut(s) 542, 1275
PfeI GAWTC 4 cut(s) 257, 488, 590, 902
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 5 cut(s) 119, 135, 144, 365, 368
Ple19I CGATCG 2 cut(s) 45, 458
PleI GAGTC 3 cut(s) 65, 166, 1290
PpsI GAGTC 3 cut(s) 65, 166, 1290
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 176, 604, 895
PspGI CCWGG 3 cut(s) 176, 604, 895
PspN4I GGNNCC 4 cut(s) 60, 110, 141, 215
PspPI GGNCC 1 cut(s) 350
PvuI CGATCG 2 cut(s) 45, 458
PvuII CAGCTG 1 cut(s) 117
RsaI GTAC 3 cut(s) 921, 1332, 1369
RsaNI GTAC 3 cut(s) 920, 1331, 1368
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 5 cut(s) 118, 134, 143, 364, 367
Sau3AI GATC 5 cut(s) 42, 455, 499, 505, 911
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 3 cut(s) 65, 166, 1291
ScrFI CCNGG 4 cut(s) 178, 218, 606, 897
SduI GDGCHC 3 cut(s) 53, 209, 768
SexAI ACCWGGT 1 cut(s) 895
SfaNI GCATC 1 cut(s) 688
SgrAI CRCCGGYG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 1355
Sse9I AATT 9 cut(s) 439, 595, 949, 962, 1055, 1077, 1540, 1551, 1556
SspI AATATT 1 cut(s) 1446
SspMI CTAG 6 cut(s) 549, 660, 890, 1107, 1356, 1523
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 4 cut(s) 176, 216, 604, 895
StyI CCWWGG 1 cut(s) 1337
TaaI ACNGT 7 cut(s) 199, 653, 886, 972, 1028, 1038, 1473
TaiI ACGT 1 cut(s) 921
TaqI TCGA 6 cut(s) 23, 341, 443, 504, 536, 1244
TaqII GACCGA 1 cut(s) 78
TasI AATT 9 cut(s) 439, 595, 949, 962, 1055, 1077, 1540, 1551, 1556
TatI WGTACW 1 cut(s) 1330
TauI GCSGC 3 cut(s) 145, 366, 369
TfiI GAWTC 4 cut(s) 257, 488, 590, 902
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 532, 1492
TseFI GTSAC 2 cut(s) 90, 1568
TseI GCWGC 2 cut(s) 117, 133
Tsp45I GTSAC 2 cut(s) 90, 1568
TspDTI ATGAA 9 cut(s) 800, 816, 927, 1171, 1277, 1306, 1413, 1496, 1500
TspGWI ACGGA 1 cut(s) 895
TspRI CASTG 2 cut(s) 532, 1492
XapI RAATTY 3 cut(s) 439, 1540, 1551
XceI RCATGY 2 cut(s) 830, 1497
XmnI GAANNNNTTC 2 cut(s) 542, 1275
XspI CTAG 6 cut(s) 549, 660, 890, 1107, 1356, 1523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.