Rh7BG116600

chitin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004481
Physical Location & Seq
Reverse (-)
8710693 .. 8714260
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG116600.1

Sequence Viewer

Length: 1602 bp
ATGGCGACCTCGGCGTTCAAATCGACGACGAAGCGGACGCCGATCGGGAGCTCTCCGGCTCCGGCGGAGGACTCGTCTTCGGTTAATCGGTCACACCGGCGCTCGCGGAGCCTCAGCTGCTTCTCGCGCCGGTTGCCGGAGCCGCCGGCCGAGGAGTTTGAAGTCAATCCGACTCCCAGGAGGAAGTTTGTGAACACGGTCAGGGGCTCGGGGTTCCCGGAGATTAGTCTTGATGACTTGGCGATTGAGCTGTTTGATTCTGGCTCGGATGAGAGAGGAGGACGCTCGGCGTTGCGGAGTTCCGAAACTACCCCTGCCCAGAGGCGGGGGAGGTCGGTGTCGAGGCACGGCCCGAGGGTGAGCGGCGGCGGCGGCGGCGAGACGAGGGGCCGTGCTGGTAATAGCTCAGGTGGAGGGAAGGTAGTTTCGGAAAGTAAGGGAAATTCGAGGCAAAGGCGATCGGTTTCTGTTGCTCGGTATCAGATGAGCGATTCCGAGAGTGATCTCGATCATACTCATAATCGTAGCACTGCTAAGTCGAAGAACTTCACTAGCGGTAACAACCAGACGCCCTTGTCCCGTAAGTCATTGGATTCAAATTATAGGCCAGGATTGAGAAGGTCTCTTAGCCAAAAAGATTTGAAGTGCCATGATGGTTACTCTAGCCAGTCTTCTGTCCTAACTGATGATGAGGGGAAGGATGCTTATATCTATAAAAATGGGGCTGAGAAGACTATACGAGCTGTATATTCAGAGAAGAAGGCAGAGCACCCTGCTGGTAATGATGTGAAAAGTGGACTTTATGAAGTAATGCGAAAAGAAATTAGACATGCTGTGGAGGAGATTAGGACAGAACTTGAACAGGAAAAGGGCAAAACAAAATCTACTGTTCCAGCACCTGGTGATTCCTTGCGATCTAACGGTTCAGATGTACTTCAGGCTGTTTCTTCAATCAGGAAGAATTATTCTTCCAAATTGGAACAGTCAGAAAAGCGTAAACAAGATTTATTAGCGGAAATAGTGCTGGAGGAACAACACAGTAGGGAACTGTCAAAGATTGTAAAAGAATTGCTCCCTGAGCCAAAGAAAATTGTCAGTCCAGACAGACCGTCACGAACTAGAAGGAGGAGCAATGACAAAGGTAGGGTGTCTAAGCGATTGACTGAGGAAGCAGAAAGATATATTGAGGACTTCATTTCAAATGTTGAAGACACAGATATATCATCACTTGATGGTGAAAGAAGTGATACAAGTTCGAGCTTAGGAGGAATAATGAAGGGCGAAACTTTTCAGAGTCCAGCCATGTCAACTCCTCCTCCTCCTGTTTTCATGGACGGCGTTGTACTGCCTTGGTTGCGGTGGGAGACTAGTAATGATGGTACTCCTATGGGGTGCAGGAATAAGACTGAACCACCAATGACCCCAAAGTCTTTTTCATGGGGTGCTTCTCAGGTAATATTTGGAAGTTATGCGTCCCCATTACAGTTTTTGATTGCCAGTGTGGCATGTCTCGTTTTTCATTCATTGTTATCTCTAGTAATATCGTCCTCAAATTTCTTTGAAATTCAATTTACAGGAAGTGACCAATGCACAAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

533

Amino Acids

58.71

Weight (kDa)

9.38

Isoelectric Point (pI)

72.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 574, 1426
AccB7I CCANNNNNTGG 1 cut(s) 899
AccBSI CCGCTC 1 cut(s) 363
AccII CGCG 2 cut(s) 106, 127
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 3 cut(s) 442, 1552, 1563
AcuI CTGAAG 1 cut(s) 920
AcyI GRCGYC 2 cut(s) 38, 569
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 3 cut(s) 933, 1344, 1381
AfiI CCNNNNNNNGG 4 cut(s) 136, 324, 325, 899
AhdI GACNNNNNGTC 1 cut(s) 1108
AhlI ACTAGT 1 cut(s) 1367
AjnI CCWGG 3 cut(s) 176, 607, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 1417, 1449
AluBI AGCT 6 cut(s) 51, 117, 250, 405, 743, 1260
AluI AGCT 6 cut(s) 51, 117, 250, 405, 743, 1260
Alw21I GWGCWC 2 cut(s) 53, 771
Alw26I GTCTC 4 cut(s) 374, 627, 1358, 1514
AlwNI CAGNNNCTG 1 cut(s) 899
Ama87I CYCGRG 2 cut(s) 208, 352
AoxI GGCC 4 cut(s) 147, 349, 388, 605
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 3 cut(s) 442, 1552, 1563
Asp700I GAANNNNTTC 2 cut(s) 545, 1287
AspLEI GCGC 2 cut(s) 102, 129
AspS9I GGNCC 2 cut(s) 350, 388
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 370, 914, 1247
AvaI CYCGRG 2 cut(s) 208, 352
BanII GRGCYC 2 cut(s) 53, 209
BbsI GAAGAC 4 cut(s) 69, 663, 737, 1215
Bbv12I GWGCWC 2 cut(s) 53, 771
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 104
BccI CCATC 3 cut(s) 647, 1226, 1370
BceAI ACGGC 3 cut(s) 364, 375, 1351
BciT130I CCWGG 3 cut(s) 178, 609, 900
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 4 cut(s) 374, 627, 1358, 1514
BcuI ACTAGT 1 cut(s) 1367
BfaI CTAG 5 cut(s) 552, 663, 1119, 1368, 1535
BfoI RGCGCY 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 1502
BisI GCNGC 7 cut(s) 118, 143, 364, 367, 370, 373, 376
BlsI GCNGC 7 cut(s) 119, 144, 365, 368, 371, 374, 377
Bme1390I CCNGG 4 cut(s) 178, 218, 609, 900
BmeRI GACNNNNNGTC 1 cut(s) 1108
BmeT110I CYCGRG 2 cut(s) 208, 352
BmgT120I GGNCC 2 cut(s) 350, 388
BmiI GGNNCC 5 cut(s) 60, 110, 141, 215, 389
BmrFI CCNGG 4 cut(s) 178, 218, 609, 900
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 4 cut(s) 69, 663, 737, 1215
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 1046
Bpu10I CCTNAGC 4 cut(s) 113, 406, 1077, 1261
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 38, 569
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 5 cut(s) 9, 150, 176, 353, 1349
BsaXI ACNNNNNCTCC 6 cut(s) 59, 89, 405, 435, 1300, 1330
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 324, 325, 899
Bse118I RCCGGY 3 cut(s) 96, 129, 145
Bse1I ACTGG 2 cut(s) 667, 1497
Bse3DI GCAATG 1 cut(s) 1138
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 3 cut(s) 178, 609, 900
BseDI CCNNGG 5 cut(s) 9, 150, 176, 353, 1349
BseGI GGATG 2 cut(s) 274, 706
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 4 cut(s) 136, 324, 325, 899
BseMI GCAATG 1 cut(s) 1138
BseMII CTCAG 6 cut(s) 127, 420, 717, 1068, 1155, 1463
BseNI ACTGG 2 cut(s) 667, 1497
BseRI GAGGAG 7 cut(s) 167, 291, 854, 1141, 1302, 1305, 1308
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 1414
Bsh1236I CGCG 2 cut(s) 106, 127
Bsh1285I CGRYCG 3 cut(s) 45, 150, 461
BshFI GGCC 4 cut(s) 149, 351, 390, 607
BsiEI CGRYCG 3 cut(s) 45, 150, 461
BsiHKAI GWGCWC 2 cut(s) 53, 771
BsiHKCI CYCGRG 2 cut(s) 208, 352
BsiSI CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
BslFI GGGAC 2 cut(s) 562, 1459
BslI CCNNNNNNNGG 4 cut(s) 136, 324, 325, 899
BsmAI GTCTC 4 cut(s) 374, 627, 1358, 1514
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 562, 1459
BsnI GGCC 4 cut(s) 149, 351, 390, 607
Bso31I GGTCTC 1 cut(s) 627
BsoBI CYCGRG 2 cut(s) 208, 352
Bsp1286I GDGCHC 3 cut(s) 53, 209, 771
Bsp143I GATC 5 cut(s) 42, 458, 502, 508, 914
BspANI GGCC 4 cut(s) 149, 351, 390, 607
BspCNI CTCAG 6 cut(s) 126, 419, 718, 1069, 1156, 1462
BspFNI CGCG 2 cut(s) 106, 127
BspLI GGNNCC 5 cut(s) 60, 110, 141, 215, 389
BspTNI GGTCTC 1 cut(s) 627
BsrBI CCGCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 1138
BsrFI RCCGGY 3 cut(s) 96, 129, 145
BsrI ACTGG 2 cut(s) 667, 1497
BssAI RCCGGY 3 cut(s) 96, 129, 145
BssECI CCNNGG 5 cut(s) 9, 150, 176, 353, 1349
BssMI GATC 5 cut(s) 42, 458, 502, 508, 914
BssNI GRCGYC 2 cut(s) 38, 569
BssT1I CCWWGG 1 cut(s) 1349
Bst2UI CCWGG 3 cut(s) 178, 609, 900
Bst4CI ACNGT 8 cut(s) 199, 889, 923, 984, 1040, 1050, 1110, 1485
BstACI GRCGYC 2 cut(s) 38, 569
BstC8I GCNNGC 2 cut(s) 104, 147
BstF5I GGATG 2 cut(s) 274, 706
BstFNI CGCG 2 cut(s) 106, 127
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 129
BstKTI GATC 5 cut(s) 45, 461, 505, 511, 917
BstMAI GTCTC 4 cut(s) 374, 627, 1358, 1514
BstMBI GATC 5 cut(s) 42, 458, 502, 508, 914
BstMCI CGRYCG 3 cut(s) 45, 150, 461
BstNI CCWGG 3 cut(s) 178, 609, 900
BstNSI RCATGY 2 cut(s) 833, 1509
BstSCI CCNGG 4 cut(s) 176, 216, 607, 898
BstUI CGCG 2 cut(s) 106, 127
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 4 cut(s) 69, 663, 737, 1215
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 4 cut(s) 149, 351, 390, 607
BtsCI GGATG 2 cut(s) 274, 706
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 528, 1504
Cac8I GCNNGC 2 cut(s) 104, 147
CaiI CAGNNNCTG 1 cut(s) 899
CfoI GCGC 2 cut(s) 102, 129
Cfr10I RCCGGY 3 cut(s) 96, 129, 145
Cfr13I GGNCC 2 cut(s) 350, 388
CseI GACGC 4 cut(s) 46, 291, 577, 1461
CsiI ACCWGGT 1 cut(s) 898
Csp6I GTAC 3 cut(s) 932, 1343, 1380
CviAII CATG 6 cut(s) 650, 830, 1303, 1330, 1437, 1506
CviQI GTAC 3 cut(s) 932, 1343, 1380
DpnI GATC 5 cut(s) 44, 460, 504, 510, 916
DpnII GATC 5 cut(s) 42, 458, 502, 508, 914
DraIII CACNNNGTG 1 cut(s) 902
DrdI GACNNNNNNGTC 2 cut(s) 574, 1426
DriI GACNNNNNGTC 1 cut(s) 1108
DseDI GACNNNNNNGTC 2 cut(s) 574, 1426
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
Eam1105I GACNNNNNGTC 1 cut(s) 1108
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 1349
Eco24I GRGCYC 2 cut(s) 53, 209
Eco31I GGTCTC 1 cut(s) 627
Eco52I CGGCCG 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 920
Eco88I CYCGRG 2 cut(s) 208, 352
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 176, 607, 898
EcoT14I CCWWGG 1 cut(s) 1349
EcoT38I GRGCYC 2 cut(s) 53, 209
ErhI CCWWGG 1 cut(s) 1349
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 6 cut(s) 653, 833, 1306, 1333, 1440, 1509
FaqI GGGAC 2 cut(s) 562, 1459
FatI CATG 6 cut(s) 649, 829, 1302, 1329, 1436, 1505
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 118, 143, 364, 367, 370, 373, 376
FokI GGATG 2 cut(s) 281, 713
FriOI GRGCYC 2 cut(s) 53, 209
Fsp4HI GCNGC 7 cut(s) 118, 143, 364, 367, 370, 373, 376
FspBI CTAG 5 cut(s) 552, 663, 1119, 1368, 1535
GlaI GCGC 2 cut(s) 101, 128
GluI GCNGC 7 cut(s) 118, 143, 364, 367, 370, 373, 376
GsuI CTGGAG 1 cut(s) 1046
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 4 cut(s) 149, 351, 390, 607
HapII CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
HgaI GACGC 4 cut(s) 46, 291, 577, 1461
HhaI GCGC 2 cut(s) 102, 129
Hin1I GRCGYC 2 cut(s) 38, 569
Hin1II CATG 6 cut(s) 653, 833, 1306, 1333, 1440, 1509
Hin6I GCGC 2 cut(s) 100, 127
HinP1I GCGC 2 cut(s) 100, 127
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HinfI GANTC 7 cut(s) 71, 172, 257, 491, 593, 905, 1294
HpaII CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
HphI GGTGA 3 cut(s) 370, 914, 1247
Hpy166II GTNNAC 4 cut(s) 193, 797, 998, 1308
Hpy188III TCNNGA 6 cut(s) 46, 230, 506, 955, 1100, 1113
Hpy8I GTNNAC 4 cut(s) 193, 797, 998, 1308
Hpy99I CGWCG 2 cut(s) 28, 31
HpyAV CCTTC 6 cut(s) 412, 612, 691, 754, 1116, 1270
HpyCH4III ACNGT 8 cut(s) 199, 889, 923, 984, 1040, 1050, 1110, 1485
HpyCH4V TGCA 2 cut(s) 1395, 1590
Hsp92I GRCGYC 2 cut(s) 38, 569
Hsp92II CATG 6 cut(s) 653, 833, 1306, 1333, 1440, 1509
HspAI GCGC 2 cut(s) 100, 127
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 5 cut(s) 42, 458, 502, 508, 914
LmnI GCTCC 6 cut(s) 48, 64, 108, 139, 1077, 1128
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 691
MabI ACCWGGT 1 cut(s) 898
MaeI CTAG 5 cut(s) 552, 663, 1119, 1368, 1535
MaeIII GTNAC 5 cut(s) 90, 557, 656, 1110, 1580
MalI GATC 5 cut(s) 44, 460, 504, 510, 916
MbiI CCGCTC 1 cut(s) 363
MboI GATC 5 cut(s) 42, 458, 502, 508, 914
MboII GAAGA 9 cut(s) 69, 553, 663, 742, 769, 939, 960, 970, 1220
MhlI GDGCHC 3 cut(s) 53, 209, 771
MlyI GAGTC 3 cut(s) 65, 166, 1303
MmeI TCCRAC 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 145
MroXI GAANNNNTTC 2 cut(s) 545, 1287
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 7 cut(s) 56, 62, 97, 130, 137, 146, 218
MspR9I CCNGG 4 cut(s) 178, 218, 609, 900
MvaI CCWGG 3 cut(s) 178, 609, 900
MvnI CGCG 2 cut(s) 106, 127
NaeI GCCGGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 218
NdeII GATC 5 cut(s) 42, 458, 502, 508, 914
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 6 cut(s) 653, 833, 1306, 1333, 1440, 1509
NlaIV GGNNCC 5 cut(s) 60, 110, 141, 215, 389
NmeAIII GCCGAG 2 cut(s) 175, 266
NmuCI GTSAC 3 cut(s) 90, 1110, 1580
NspI RCATGY 2 cut(s) 833, 1509
PdiI GCCGGC 1 cut(s) 147
PdmI GAANNNNTTC 2 cut(s) 545, 1287
PfeI GAWTC 4 cut(s) 257, 491, 593, 905
PflMI CCANNNNNTGG 1 cut(s) 899
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 7 cut(s) 119, 144, 365, 368, 371, 374, 377
Ple19I CGATCG 2 cut(s) 45, 461
PleI GAGTC 3 cut(s) 65, 166, 1302
PpsI GAGTC 3 cut(s) 65, 166, 1302
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 176, 607, 898
PspGI CCWGG 3 cut(s) 176, 607, 898
PspN4I GGNNCC 5 cut(s) 60, 110, 141, 215, 389
PspPI GGNCC 2 cut(s) 350, 388
PstNI CAGNNNCTG 1 cut(s) 899
PvuI CGATCG 2 cut(s) 45, 461
PvuII CAGCTG 1 cut(s) 117
RsaI GTAC 3 cut(s) 933, 1344, 1381
RsaNI GTAC 3 cut(s) 932, 1343, 1380
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 7 cut(s) 118, 143, 364, 367, 370, 373, 376
Sau3AI GATC 5 cut(s) 42, 458, 502, 508, 914
Sau96I GGNCC 2 cut(s) 350, 388
SchI GAGTC 3 cut(s) 65, 166, 1303
ScrFI CCNGG 4 cut(s) 178, 218, 609, 900
SduI GDGCHC 3 cut(s) 53, 209, 771
SexAI ACCWGGT 1 cut(s) 898
SfaNI GCATC 1 cut(s) 691
SgrAI CRCCGGYG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 1367
SspI AATATT 1 cut(s) 1458
SspMI CTAG 5 cut(s) 552, 663, 1119, 1368, 1535
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 4 cut(s) 176, 216, 607, 898
StyI CCWWGG 1 cut(s) 1349
TaaI ACNGT 8 cut(s) 199, 889, 923, 984, 1040, 1050, 1110, 1485
TaqI TCGA 6 cut(s) 23, 341, 446, 507, 539, 1256
TaqII GACCGA 1 cut(s) 78
TatI WGTACW 2 cut(s) 931, 1342
TauI GCSGC 6 cut(s) 145, 366, 369, 372, 375, 378
TfiI GAWTC 4 cut(s) 257, 491, 593, 905
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 535, 1504
TseFI GTSAC 3 cut(s) 90, 1110, 1580
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 3 cut(s) 90, 1110, 1580
TspDTI ATGAA 7 cut(s) 819, 1183, 1289, 1318, 1425, 1508, 1512
TspRI CASTG 2 cut(s) 535, 1504
Van91I CCANNNNNTGG 1 cut(s) 899
XapI RAATTY 3 cut(s) 442, 1552, 1563
XceI RCATGY 2 cut(s) 833, 1509
XmnI GAANNNNTTC 2 cut(s) 545, 1287
XspI CTAG 5 cut(s) 552, 663, 1119, 1368, 1535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.