PPR repeat family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g15060 FvH4_5g15060 |
| malus_domestica | MD02G1300800.v1.1 MD06G1163000.v1.1 MD12G1160800.v1.1 MD14G1199000.v1.1 |
| prunus_persica | Prupe.5G192100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0181141 |
| rosa_laevigata | RLG00000005210 |
| rosa_multiflora | Rmu_sc0001147.1_g000018 |
| rosa_roxburghii | Rroxscaffold_3G00272240 |
| rosa_rugosa | Rorug06G0438700 |
| rosa_samantha | Rh7BG040100 Rh7CG042100 |
| rosa_wichuraiana | Rw7G003360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 183 |
| AarI | CACCTGC | 1 cut(s) | 443 |
| Acc36I | ACCTGC | 1 cut(s) | 443 |
| AgsI | TTSAA | 1 cut(s) | 413 |
| AluBI | AGCT | 2 cut(s) | 221, 353 |
| AluI | AGCT | 2 cut(s) | 221, 353 |
| ApeKI | GCWGC | 2 cut(s) | 38, 296 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 245, 277, 455, 487 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 417 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| BbvI | GCAGC | 2 cut(s) | 50, 283 |
| BccI | CCATC | 1 cut(s) | 450 |
| BceAI | ACGGC | 1 cut(s) | 402 |
| BfaI | CTAG | 1 cut(s) | 447 |
| BfmI | CTRYAG | 1 cut(s) | 372 |
| BfuAI | ACCTGC | 1 cut(s) | 443 |
| BglII | AGATCT | 1 cut(s) | 313 |
| BisI | GCNGC | 2 cut(s) | 39, 297 |
| BlsI | GCNGC | 2 cut(s) | 40, 298 |
| BmsI | GCATC | 1 cut(s) | 81 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 389, 419 |
| BseGI | GGATG | 2 cut(s) | 442, 523 |
| BseXI | GCAGC | 2 cut(s) | 50, 283 |
| BsgI | GTGCAG | 2 cut(s) | 57, 421 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| Bsp143I | GATC | 1 cut(s) | 313 |
| BspMI | ACCTGC | 1 cut(s) | 443 |
| BssMI | GATC | 1 cut(s) | 313 |
| Bst4CI | ACNGT | 4 cut(s) | 179, 373, 471, 488 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 194 |
| BstF5I | GGATG | 2 cut(s) | 442, 523 |
| BstKTI | GATC | 1 cut(s) | 316 |
| BstMBI | GATC | 1 cut(s) | 313 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstSFI | CTRYAG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 2 cut(s) | 50, 283 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BtsCI | GGATG | 2 cut(s) | 442, 523 |
| BtsIMutI | CAGTG | 3 cut(s) | 389, 467, 484 |
| BveI | ACCTGC | 1 cut(s) | 443 |
| CviAII | CATG | 1 cut(s) | 338 |
| CviJI | RGCY | 3 cut(s) | 221, 296, 353 |
| CviKI_1 | RGCY | 3 cut(s) | 221, 296, 353 |
| DpnI | GATC | 1 cut(s) | 315 |
| DpnII | GATC | 1 cut(s) | 313 |
| FaeI | CATG | 1 cut(s) | 341 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 11, 43 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 1 cut(s) | 337 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 297 |
| FokI | GGATG | 2 cut(s) | 429, 510 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 297 |
| FspBI | CTAG | 1 cut(s) | 447 |
| GluI | GCNGC | 2 cut(s) | 39, 297 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| Hin1II | CATG | 1 cut(s) | 341 |
| HinfI | GANTC | 3 cut(s) | 261, 334, 450 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 2 cut(s) | 478, 533 |
| Hpy188III | TCNNGA | 1 cut(s) | 491 |
| HpyAV | CCTTC | 1 cut(s) | 428 |
| HpyCH4III | ACNGT | 4 cut(s) | 179, 373, 471, 488 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 164, 438 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| Hsp92II | CATG | 1 cut(s) | 341 |
| Kzo9I | GATC | 1 cut(s) | 313 |
| LpnPI | CCDG | 6 cut(s) | 111, 174, 183, 234, 448, 504 |
| Lsp1109I | GCAGC | 2 cut(s) | 50, 283 |
| LweI | GCATC | 1 cut(s) | 81 |
| MaeI | CTAG | 1 cut(s) | 447 |
| MaeIII | GTNAC | 2 cut(s) | 68, 103 |
| MalI | GATC | 1 cut(s) | 315 |
| MboI | GATC | 1 cut(s) | 313 |
| MboII | GAAGA | 2 cut(s) | 31, 340 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MluCI | AATT | 1 cut(s) | 97 |
| MnlI | CCTC | 1 cut(s) | 484 |
| MroXI | GAANNNNTTC | 1 cut(s) | 417 |
| MseI | TTAA | 3 cut(s) | 54, 150, 396 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NdeII | GATC | 1 cut(s) | 313 |
| NlaIII | CATG | 1 cut(s) | 341 |
| PaqCI | CACCTGC | 1 cut(s) | 443 |
| PdmI | GAANNNNTTC | 1 cut(s) | 417 |
| PfeI | GAWTC | 3 cut(s) | 261, 334, 450 |
| PkrI | GCNGC | 2 cut(s) | 40, 298 |
| PsiI | TTATAA | 1 cut(s) | 183 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| SaqAI | TTAA | 3 cut(s) | 54, 150, 396 |
| SatI | GCNGC | 2 cut(s) | 39, 297 |
| Sau3AI | GATC | 1 cut(s) | 313 |
| SetI | ASST | 3 cut(s) | 223, 355, 437 |
| SfaNI | GCATC | 1 cut(s) | 81 |
| SfcI | CTRYAG | 1 cut(s) | 372 |
| Sse9I | AATT | 1 cut(s) | 97 |
| SspMI | CTAG | 1 cut(s) | 447 |
| TaaI | ACNGT | 4 cut(s) | 179, 373, 471, 488 |
| TaqI | TCGA | 2 cut(s) | 264, 511 |
| TasI | AATT | 1 cut(s) | 97 |
| TfiI | GAWTC | 3 cut(s) | 261, 334, 450 |
| Tru1I | TTAA | 3 cut(s) | 54, 150, 396 |
| Tru9I | TTAA | 3 cut(s) | 54, 150, 396 |
| TscAI | CASTG | 3 cut(s) | 396, 474, 491 |
| TseI | GCWGC | 2 cut(s) | 38, 296 |
| TspDTI | ATGAA | 4 cut(s) | 158, 162, 257, 326 |
| TspRI | CASTG | 3 cut(s) | 396, 474, 491 |
| XmnI | GAANNNNTTC | 1 cut(s) | 417 |
| XspI | CTAG | 1 cut(s) | 447 |