Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g15060 FvH4_5g15060 |
| malus_domestica | MD02G1300800.v1.1 MD06G1163000.v1.1 MD12G1160800.v1.1 MD14G1199000.v1.1 |
| prunus_persica | Prupe.5G192100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0181141 |
| rosa_laevigata | RLG00000005210 |
| rosa_multiflora | Rmu_sc0001147.1_g000018 |
| rosa_roxburghii | Rroxscaffold_3G00272240 |
| rosa_rugosa | Rorug06G0438700 |
| rosa_samantha | Rh7BG040100 Rh7CG042100 |
| rosa_wichuraiana | Rw7G003360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 209, 1612 |
| AciI | CCGC | 5 cut(s) | 177, 232, 1195, 1311, 1883 |
| AclWI | GGATC | 2 cut(s) | 314, 1015 |
| AcoI | YGGCCR | 2 cut(s) | 307, 1857 |
| AcsI | RAATTY | 3 cut(s) | 516, 766, 1134 |
| AcuI | CTGAAG | 1 cut(s) | 1800 |
| AcyI | GRCGYC | 1 cut(s) | 249 |
| AfaI | GTAC | 5 cut(s) | 692, 1275, 1301, 1538, 1559 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| AjnI | CCWGG | 1 cut(s) | 1862 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 48, 80, 470, 502 |
| Alw21I | GWGCWC | 3 cut(s) | 437, 1125, 1584 |
| Alw26I | GTCTC | 4 cut(s) | 274, 1218, 1372, 1896 |
| AlwI | GGATC | 2 cut(s) | 314, 1015 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 295, 947 |
| Ama87I | CYCGRG | 2 cut(s) | 261, 372 |
| AoxI | GGCC | 5 cut(s) | 94, 218, 307, 1154, 1857 |
| ApeKI | GCWGC | 4 cut(s) | 719, 887, 890, 1880 |
| ApoI | RAATTY | 3 cut(s) | 516, 766, 1134 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1350, 1382 |
| AseI | ATTAAT | 2 cut(s) | 362, 1181 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1422 |
| AspLEI | GCGC | 2 cut(s) | 211, 1612 |
| AspS9I | GGNCC | 2 cut(s) | 219, 229 |
| AsuC2I | CCSGG | 1 cut(s) | 583 |
| AsuHPI | GGTGA | 8 cut(s) | 76, 133, 158, 178, 670, 809, 1418, 1727 |
| AvaI | CYCGRG | 2 cut(s) | 261, 372 |
| AvaII | GGWCC | 1 cut(s) | 229 |
| BalI | TGGCCA | 2 cut(s) | 309, 1859 |
| BanII | GRGCYC | 1 cut(s) | 1125 |
| Bbv12I | GWGCWC | 3 cut(s) | 437, 1125, 1584 |
| BbvI | GCAGC | 4 cut(s) | 731, 874, 877, 1867 |
| BccI | CCATC | 4 cut(s) | 230, 593, 1406, 1849 |
| BciT130I | CCWGG | 1 cut(s) | 1864 |
| BcnI | CCSGG | 1 cut(s) | 583 |
| BcoDI | GTCTC | 4 cut(s) | 274, 1218, 1372, 1896 |
| BfaI | CTAG | 8 cut(s) | 387, 408, 1187, 1325, 1353, 1625, 1725, 1808 |
| BfmI | CTRYAG | 2 cut(s) | 1277, 1659 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 217 |
| BglII | AGATCT | 2 cut(s) | 904, 1756 |
| BisI | GCNGC | 5 cut(s) | 720, 888, 891, 1195, 1881 |
| BlsI | GCNGC | 5 cut(s) | 721, 889, 892, 1196, 1882 |
| Bme1390I | CCNGG | 2 cut(s) | 583, 1864 |
| Bme18I | GGWCC | 1 cut(s) | 229 |
| BmeT110I | CYCGRG | 2 cut(s) | 261, 372 |
| BmgT120I | GGNCC | 2 cut(s) | 219, 229 |
| BmrFI | CCNGG | 2 cut(s) | 583, 1864 |
| BmsI | GCATC | 5 cut(s) | 729, 1338, 1580, 1602, 1804 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1451, 1483 |
| BpmI | CTGGAG | 1 cut(s) | 969 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1151 |
| BpuMI | CCSGG | 1 cut(s) | 583 |
| BsaHI | GRCGYC | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| Bse118I | RCCGGY | 1 cut(s) | 234 |
| Bse1I | ACTGG | 2 cut(s) | 600, 952 |
| BseBI | CCWGG | 1 cut(s) | 1864 |
| BseGI | GGATG | 8 cut(s) | 496, 604, 732, 1042, 1595, 1692, 1796, 1834 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| BseMII | CTCAG | 4 cut(s) | 443, 735, 1215, 1440 |
| BseNI | ACTGG | 2 cut(s) | 600, 952 |
| BseRI | GAGGAG | 1 cut(s) | 1643 |
| BseXI | GCAGC | 4 cut(s) | 731, 874, 877, 1867 |
| BseYI | CCCAGC | 2 cut(s) | 78, 788 |
| BsgI | GTGCAG | 1 cut(s) | 1570 |
| Bsh1236I | CGCG | 2 cut(s) | 209, 1612 |
| BshFI | GGCC | 5 cut(s) | 96, 220, 309, 1156, 1859 |
| BsiHKAI | GWGCWC | 3 cut(s) | 437, 1125, 1584 |
| BsiHKCI | CYCGRG | 2 cut(s) | 261, 372 |
| BsiSI | CCGG | 2 cut(s) | 235, 582 |
| BslFI | GGGAC | 2 cut(s) | 988, 1220 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| BsmAI | GTCTC | 4 cut(s) | 274, 1218, 1372, 1896 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 2 cut(s) | 988, 1220 |
| BsmI | GAATGC | 2 cut(s) | 1227, 1288 |
| BsnI | GGCC | 5 cut(s) | 96, 220, 309, 1156, 1859 |
| BsoBI | CYCGRG | 2 cut(s) | 261, 372 |
| Bsp1286I | GDGCHC | 3 cut(s) | 437, 1125, 1584 |
| Bsp143I | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| BspACI | CCGC | 5 cut(s) | 177, 232, 1195, 1311, 1883 |
| BspANI | GGCC | 5 cut(s) | 96, 220, 309, 1156, 1859 |
| BspCNI | CTCAG | 4 cut(s) | 442, 736, 1214, 1441 |
| BspFNI | CGCG | 2 cut(s) | 209, 1612 |
| BspMAI | CTGCAG | 1 cut(s) | 1281 |
| BspPI | GGATC | 2 cut(s) | 314, 1015 |
| BspQI | GCTCTTC | 2 cut(s) | 50, 1130 |
| BsrFI | RCCGGY | 1 cut(s) | 234 |
| BsrI | ACTGG | 2 cut(s) | 600, 952 |
| BssAI | RCCGGY | 1 cut(s) | 234 |
| BssMI | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| BssNI | GRCGYC | 1 cut(s) | 249 |
| Bst2UI | CCWGG | 1 cut(s) | 1864 |
| Bst4CI | ACNGT | 5 cut(s) | 439, 448, 635, 964, 1586 |
| Bst6I | CTCTTC | 4 cut(s) | 50, 168, 1130, 1643 |
| BstACI | GRCGYC | 1 cut(s) | 249 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 785 |
| BstC8I | GCNNGC | 5 cut(s) | 236, 1192, 1510, 1608, 1614 |
| BstDEI | CTNAG | 5 cut(s) | 429, 744, 1151, 1201, 1449 |
| BstF5I | GGATG | 8 cut(s) | 496, 604, 732, 1042, 1595, 1692, 1796, 1834 |
| BstFNI | CGCG | 2 cut(s) | 209, 1612 |
| BstHHI | GCGC | 2 cut(s) | 211, 1612 |
| BstKTI | GATC | 6 cut(s) | 322, 907, 960, 1010, 1759, 1786 |
| BstMAI | GTCTC | 4 cut(s) | 274, 1218, 1372, 1896 |
| BstMBI | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 217, 785, 950, 1427 |
| BstNI | CCWGG | 1 cut(s) | 1864 |
| BstNSI | RCATGY | 1 cut(s) | 1500 |
| BstSCI | CCNGG | 2 cut(s) | 581, 1862 |
| BstSFI | CTRYAG | 2 cut(s) | 1277, 1659 |
| BstUI | CGCG | 2 cut(s) | 209, 1612 |
| BstV1I | GCAGC | 4 cut(s) | 731, 874, 877, 1867 |
| BstX2I | RGATCY | 2 cut(s) | 904, 1756 |
| BstYI | RGATCY | 2 cut(s) | 904, 1756 |
| BsuRI | GGCC | 5 cut(s) | 96, 220, 309, 1156, 1859 |
| BtsCI | GGATG | 8 cut(s) | 496, 604, 732, 1042, 1595, 1692, 1796, 1834 |
| BtsI | GCAGTG | 2 cut(s) | 684, 1766 |
| BtsIMutI | CAGTG | 5 cut(s) | 684, 960, 980, 1582, 1766 |
| Cac8I | GCNNGC | 5 cut(s) | 236, 1192, 1510, 1608, 1614 |
| CaiI | CAGNNNCTG | 2 cut(s) | 295, 947 |
| CfoI | GCGC | 2 cut(s) | 211, 1612 |
| Cfr10I | RCCGGY | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 2 cut(s) | 219, 229 |
| CseI | GACGC | 2 cut(s) | 257, 393 |
| Csp6I | GTAC | 5 cut(s) | 691, 1274, 1300, 1537, 1558 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1368, 1403 |
| CviQI | GTAC | 5 cut(s) | 691, 1274, 1300, 1537, 1558 |
| DdeI | CTNAG | 5 cut(s) | 429, 744, 1151, 1201, 1449 |
| DpnI | GATC | 6 cut(s) | 321, 906, 959, 1009, 1758, 1785 |
| DpnII | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| EaeI | YGGCCR | 2 cut(s) | 307, 1857 |
| Eam1104I | CTCTTC | 4 cut(s) | 50, 168, 1130, 1643 |
| EarI | CTCTTC | 4 cut(s) | 50, 168, 1130, 1643 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Ecl136II | GAGCTC | 1 cut(s) | 1123 |
| Eco147I | AGGCCT | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 1125 |
| Eco47I | GGWCC | 1 cut(s) | 229 |
| Eco53kI | GAGCTC | 1 cut(s) | 1123 |
| Eco57I | CTGAAG | 1 cut(s) | 1800 |
| Eco88I | CYCGRG | 2 cut(s) | 261, 372 |
| EcoICRI | GAGCTC | 1 cut(s) | 1123 |
| EcoRI | GAATTC | 1 cut(s) | 766 |
| EcoRII | CCWGG | 1 cut(s) | 1862 |
| EcoT22I | ATGCAT | 1 cut(s) | 1595 |
| EcoT38I | GRGCYC | 1 cut(s) | 1125 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1410, 1442 |
| FaqI | GGGAC | 2 cut(s) | 988, 1220 |
| FauI | CCCGC | 2 cut(s) | 1304, 1876 |
| Fnu4HI | GCNGC | 5 cut(s) | 720, 888, 891, 1195, 1881 |
| FokI | GGATG | 8 cut(s) | 503, 611, 739, 1049, 1602, 1699, 1783, 1841 |
| FriOI | GRGCYC | 1 cut(s) | 1125 |
| Fsp4HI | GCNGC | 5 cut(s) | 720, 888, 891, 1195, 1881 |
| FspBI | CTAG | 8 cut(s) | 387, 408, 1187, 1325, 1353, 1625, 1725, 1808 |
| GlaI | GCGC | 2 cut(s) | 210, 1611 |
| GluI | GCNGC | 5 cut(s) | 720, 888, 891, 1195, 1881 |
| GsaI | CCCAGC | 2 cut(s) | 82, 792 |
| GsuI | CTGGAG | 1 cut(s) | 969 |
| HaeIII | GGCC | 5 cut(s) | 96, 220, 309, 1156, 1859 |
| HapII | CCGG | 2 cut(s) | 235, 582 |
| HgaI | GACGC | 2 cut(s) | 257, 393 |
| HhaI | GCGC | 2 cut(s) | 211, 1612 |
| Hin1I | GRCGYC | 1 cut(s) | 249 |
| Hin6I | GCGC | 2 cut(s) | 209, 1610 |
| HinP1I | GCGC | 2 cut(s) | 209, 1610 |
| HinfI | GANTC | 4 cut(s) | 16, 1078, 1423, 1749 |
| HpaII | CCGG | 2 cut(s) | 235, 582 |
| HphI | GGTGA | 8 cut(s) | 76, 133, 158, 178, 670, 809, 1418, 1727 |
| Hpy166II | GTNNAC | 1 cut(s) | 1558 |
| Hpy188I | TCNGA | 3 cut(s) | 432, 1530, 1910 |
| Hpy188III | TCNNGA | 6 cut(s) | 317, 511, 1046, 1109, 1143, 1435 |
| Hpy8I | GTNNAC | 1 cut(s) | 1558 |
| HpyCH4III | ACNGT | 5 cut(s) | 439, 448, 635, 964, 1586 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 9 cut(s) | 289, 677, 779, 1279, 1551, 1593, 1673, 1771, 1817 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 217, 785, 950, 1427 |
| HpyF3I | CTNAG | 5 cut(s) | 429, 744, 1151, 1201, 1449 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 249 |
| HspAI | GCGC | 2 cut(s) | 209, 1610 |
| KroI | GCCGGC | 1 cut(s) | 234 |
| KroNI | GCCGGC | 1 cut(s) | 236 |
| Kzo9I | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| LguI | GCTCTTC | 2 cut(s) | 50, 1130 |
| LmnI | GCTCC | 4 cut(s) | 533, 950, 1314, 1848 |
| Lsp1109I | GCAGC | 4 cut(s) | 731, 874, 877, 1867 |
| LweI | GCATC | 5 cut(s) | 729, 1338, 1580, 1602, 1804 |
| MaeI | CTAG | 8 cut(s) | 387, 408, 1187, 1325, 1353, 1625, 1725, 1808 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 6 cut(s) | 353, 442, 559, 1391, 1471, 1499 |
| MalI | GATC | 6 cut(s) | 321, 906, 959, 1009, 1758, 1785 |
| MboI | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| MboII | GAAGA | 8 cut(s) | 14, 37, 155, 487, 1117, 1250, 1660, 1793 |
| MflI | RGATCY | 2 cut(s) | 904, 1756 |
| MhlI | GDGCHC | 3 cut(s) | 437, 1125, 1584 |
| MlsI | TGGCCA | 2 cut(s) | 309, 1859 |
| MluCI | AATT | 6 cut(s) | 359, 516, 553, 766, 1134, 1380 |
| MluNI | TGGCCA | 2 cut(s) | 309, 1859 |
| MlyI | GAGTC | 1 cut(s) | 10 |
| MmeI | TCCRAC | 3 cut(s) | 468, 829, 1824 |
| Mox20I | TGGCCA | 2 cut(s) | 309, 1859 |
| Mph1103I | ATGCAT | 1 cut(s) | 1595 |
| MroNI | GCCGGC | 1 cut(s) | 234 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1422 |
| MscI | TGGCCA | 2 cut(s) | 309, 1859 |
| MseI | TTAA | 8 cut(s) | 107, 345, 362, 450, 732, 1181, 1695, 1839 |
| MslI | CAYNNNNRTG | 3 cut(s) | 711, 1086, 1601 |
| Msp20I | TGGCCA | 2 cut(s) | 309, 1859 |
| MspI | CCGG | 2 cut(s) | 235, 582 |
| MspR9I | CCNGG | 2 cut(s) | 583, 1864 |
| Mva1269I | GAATGC | 2 cut(s) | 1227, 1288 |
| MvaI | CCWGG | 1 cut(s) | 1864 |
| MvnI | CGCG | 2 cut(s) | 209, 1612 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 217, 785, 950, 1427 |
| NaeI | GCCGGC | 1 cut(s) | 236 |
| NciI | CCSGG | 1 cut(s) | 583 |
| NdeII | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| NgoMIV | GCCGGC | 1 cut(s) | 234 |
| NmuCI | GTSAC | 2 cut(s) | 1391, 1499 |
| NsiI | ATGCAT | 1 cut(s) | 1595 |
| NspI | RCATGY | 1 cut(s) | 1500 |
| PceI | AGGCCT | 1 cut(s) | 96 |
| PciSI | GCTCTTC | 2 cut(s) | 50, 1130 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 767 |
| PctI | GAATGC | 2 cut(s) | 1227, 1288 |
| PdiI | GCCGGC | 1 cut(s) | 236 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1422 |
| PfeI | GAWTC | 3 cut(s) | 1078, 1423, 1749 |
| PkrI | GCNGC | 5 cut(s) | 721, 889, 892, 1196, 1882 |
| PleI | GAGTC | 1 cut(s) | 10 |
| PpsI | GAGTC | 1 cut(s) | 10 |
| PshBI | ATTAAT | 2 cut(s) | 362, 1181 |
| Psp124BI | GAGCTC | 1 cut(s) | 1125 |
| Psp6I | CCWGG | 1 cut(s) | 1862 |
| PspFI | CCCAGC | 2 cut(s) | 78, 788 |
| PspGI | CCWGG | 1 cut(s) | 1862 |
| PspPI | GGNCC | 2 cut(s) | 219, 229 |
| PstI | CTGCAG | 1 cut(s) | 1281 |
| PstNI | CAGNNNCTG | 2 cut(s) | 295, 947 |
| PsuI | RGATCY | 2 cut(s) | 904, 1756 |
| RsaI | GTAC | 5 cut(s) | 692, 1275, 1301, 1538, 1559 |
| RsaNI | GTAC | 5 cut(s) | 691, 1274, 1300, 1537, 1558 |
| RseI | CAYNNNNRTG | 3 cut(s) | 711, 1086, 1601 |
| SacI | GAGCTC | 1 cut(s) | 1125 |
| SapI | GCTCTTC | 2 cut(s) | 50, 1130 |
| SaqAI | TTAA | 8 cut(s) | 107, 345, 362, 450, 732, 1181, 1695, 1839 |
| SatI | GCNGC | 5 cut(s) | 720, 888, 891, 1195, 1881 |
| Sau3AI | GATC | 6 cut(s) | 319, 904, 957, 1007, 1756, 1783 |
| Sau96I | GGNCC | 2 cut(s) | 219, 229 |
| SchI | GAGTC | 1 cut(s) | 10 |
| ScrFI | CCNGG | 2 cut(s) | 583, 1864 |
| SduI | GDGCHC | 3 cut(s) | 437, 1125, 1584 |
| SfaNI | GCATC | 5 cut(s) | 729, 1338, 1580, 1602, 1804 |
| SfcI | CTRYAG | 2 cut(s) | 1277, 1659 |
| SinI | GGWCC | 1 cut(s) | 229 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 711, 1086, 1601 |
| Sse9I | AATT | 6 cut(s) | 359, 516, 553, 766, 1134, 1380 |
| SseBI | AGGCCT | 1 cut(s) | 96 |
| SsiI | CCGC | 5 cut(s) | 177, 232, 1195, 1311, 1883 |
| SspMI | CTAG | 8 cut(s) | 387, 408, 1187, 1325, 1353, 1625, 1725, 1808 |
| SstI | GAGCTC | 1 cut(s) | 1125 |
| StuI | AGGCCT | 1 cut(s) | 96 |
| StyD4I | CCNGG | 2 cut(s) | 581, 1862 |
| TaaI | ACNGT | 5 cut(s) | 439, 448, 635, 964, 1586 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 3 cut(s) | 695, 770, 1092 |
| TasI | AATT | 6 cut(s) | 359, 516, 553, 766, 1134, 1380 |
| TatI | WGTACW | 2 cut(s) | 690, 1273 |
| TauI | GCSGC | 1 cut(s) | 1197 |
| TfiI | GAWTC | 3 cut(s) | 1078, 1423, 1749 |
| Tru1I | TTAA | 8 cut(s) | 107, 345, 362, 450, 732, 1181, 1695, 1839 |
| Tru9I | TTAA | 8 cut(s) | 107, 345, 362, 450, 732, 1181, 1695, 1839 |
| TscAI | CASTG | 5 cut(s) | 684, 967, 987, 1589, 1773 |
| TseFI | GTSAC | 2 cut(s) | 1391, 1499 |
| TseI | GCWGC | 4 cut(s) | 719, 887, 890, 1880 |
| Tsp45I | GTSAC | 2 cut(s) | 1391, 1499 |
| TspRI | CASTG | 5 cut(s) | 684, 967, 987, 1589, 1773 |
| VpaK11BI | GGWCC | 1 cut(s) | 229 |
| VspI | ATTAAT | 2 cut(s) | 362, 1181 |
| XapI | RAATTY | 3 cut(s) | 516, 766, 1134 |
| XceI | RCATGY | 1 cut(s) | 1500 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1422 |
| XspI | CTAG | 8 cut(s) | 387, 408, 1187, 1325, 1353, 1625, 1725, 1808 |
| Zsp2I | ATGCAT | 1 cut(s) | 1595 |