MD12G1160800.v1.1

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016340
Physical Location & Seq
Reverse (-)
24050411 .. 24051206
796 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1160800.v1.1.491

Sequence Viewer

Length: 660 bp
ATGGATTGTAATGTGAATTTGTTGAACAGTTTAGTTAGTTTTTATTCGTGTTCGAAGAGTTTGGTGGGATGTGCTTGCATTGTGTTTGATAGATATCCTCAGAAGACTGTTGTGACAATAAATTGTATGCTTTCTGGTTTTGTGAAGAACAACTTGTTTGGTGCAGCATTGGATTTGTTTAACCGAGTTTTGAGTTACGATTTTAGTTTGGGATTGAAGCCGAATTATGTTACTTTGGTTGTTTTGATTTCAGGGTGTGTGGATTTTGATGAGTTTAATGTGGGAAATGCACTTCATTCATACTGTTATAAGGCAGGATATGCTGGAGTTGGTGATTGTAGAAGAGCTTTCTCTTTGTTTAGAGAAATGAAAACAGGGGACTTTGGATTCGATAAAGTATCGCTGATTAGTTTGATTTTGGCTGCTTGTAATAGTAGAGATCTTGGTATGGGGAAGATGATTCATGGGTATATGACAGCTAATGGAACAAAAATAACTGTGGATATTTGGACGGCACTGATTAACTTTTACTCCATTGAAACCCTTCCAATCCCAAACACCTGCACCCATCCTAGATTCCTAATCTCAAACCCACTGTCCTCCGAAACCCACTGTCCTGAAACCATAAACTACATTCGACAAAATACACATCCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

220

Amino Acids

24.3

Weight (kDa)

7.5

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 36 - 87 3.9e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15060 FvH4_5g15060
malus_domestica MD02G1300800.v1.1 MD06G1163000.v1.1 MD12G1160800.v1.1 MD14G1199000.v1.1
prunus_persica Prupe.5G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0181141
rosa_laevigata RLG00000005210
rosa_multiflora Rmu_sc0001147.1_g000018
rosa_roxburghii Rroxscaffold_3G00272240
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7BG040100 Rh7CG042100
rosa_wichuraiana Rw7G003360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AarI CACCTGC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 569
AcsI RAATTY 1 cut(s) 16
AgsI TTSAA 3 cut(s) 25, 217, 539
AluBI AGCT 2 cut(s) 347, 479
AluI AGCT 2 cut(s) 347, 479
ApeKI GCWGC 2 cut(s) 164, 422
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 4 cut(s) 371, 403, 581, 613
Asp700I GAANNNNTTC 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 176, 409
BccI CCATC 1 cut(s) 576
BceAI ACGGC 1 cut(s) 528
BfaI CTAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 569
BglII AGATCT 1 cut(s) 439
BisI GCNGC 2 cut(s) 165, 423
BlsI GCNGC 2 cut(s) 166, 424
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bse8I GATNNNNATC 1 cut(s) 93
BseGI GGATG 3 cut(s) 74, 568, 649
BseJI GATNNNNATC 1 cut(s) 93
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 176, 409
BsgI GTGCAG 2 cut(s) 183, 547
BslFI GGGAC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 569
BspQI GCTCTTC 1 cut(s) 337
BspT104I TTCGAA 1 cut(s) 53
BssMI GATC 1 cut(s) 439
Bst4CI ACNGT 6 cut(s) 29, 109, 305, 499, 597, 614
Bst6I CTCTTC 2 cut(s) 50, 337
BstAPI GCANNNNNTGC 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 74, 568, 649
BstKTI GATC 1 cut(s) 442
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 176, 409
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BtsCI GGATG 3 cut(s) 74, 568, 649
BtsIMutI CAGTG 3 cut(s) 515, 593, 610
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 1 cut(s) 76
CviAII CATG 1 cut(s) 464
CviJI RGCY 4 cut(s) 220, 347, 422, 479
CviKI_1 RGCY 4 cut(s) 220, 347, 422, 479
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 50, 337
EarI CTCTTC 2 cut(s) 50, 337
Eco32I GATATC 1 cut(s) 95
EcoRV GATATC 1 cut(s) 95
FaeI CATG 1 cut(s) 467
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 392
FatI CATG 1 cut(s) 463
Fnu4HI GCNGC 2 cut(s) 165, 423
FokI GGATG 3 cut(s) 81, 555, 636
Fsp4HI GCNGC 2 cut(s) 165, 423
FspBI CTAG 1 cut(s) 573
GluI GCNGC 2 cut(s) 165, 423
GsuI CTGGAG 1 cut(s) 345
Hin1II CATG 1 cut(s) 467
HinfI GANTC 3 cut(s) 387, 460, 576
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 102, 604, 659
Hpy188III TCNNGA 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 6 cut(s) 29, 109, 305, 499, 597, 614
HpyCH4V TGCA 4 cut(s) 78, 164, 290, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 467
Kzo9I GATC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 120, 237, 300, 309, 360, 574, 630
Lsp1109I GCAGC 2 cut(s) 176, 409
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 112, 194, 229
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 5 cut(s) 67, 115, 157, 354, 466
MflI RGATCY 1 cut(s) 439
MluCI AATT 3 cut(s) 16, 121, 223
MnlI CCTC 2 cut(s) 108, 610
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 3 cut(s) 180, 276, 522
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 439
NlaIII CATG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 53
PaqCI CACCTGC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 387, 460, 576
PkrI GCNGC 2 cut(s) 166, 424
PsiI TTATAA 1 cut(s) 309
PsuI RGATCY 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 180, 276, 522
SatI GCNGC 2 cut(s) 165, 423
Sau3AI GATC 1 cut(s) 439
SetI ASST 3 cut(s) 349, 481, 563
SfuI TTCGAA 1 cut(s) 53
Sse9I AATT 3 cut(s) 16, 121, 223
SspMI CTAG 1 cut(s) 573
TaaI ACNGT 6 cut(s) 29, 109, 305, 499, 597, 614
TaqI TCGA 3 cut(s) 53, 390, 637
TasI AATT 3 cut(s) 16, 121, 223
TfiI GAWTC 3 cut(s) 387, 460, 576
Tru1I TTAA 3 cut(s) 180, 276, 522
Tru9I TTAA 3 cut(s) 180, 276, 522
TscAI CASTG 3 cut(s) 522, 600, 617
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 164, 422
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 284, 288, 383, 452
TspRI CASTG 3 cut(s) 522, 600, 617
XapI RAATTY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.