PPR repeat family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g15060 FvH4_5g15060 |
| malus_domestica | MD02G1300800.v1.1 MD06G1163000.v1.1 MD12G1160800.v1.1 MD14G1199000.v1.1 |
| prunus_persica | Prupe.5G192100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0181141 |
| rosa_laevigata | RLG00000005210 |
| rosa_multiflora | Rmu_sc0001147.1_g000018 |
| rosa_roxburghii | Rroxscaffold_3G00272240 |
| rosa_rugosa | Rorug06G0438700 |
| rosa_samantha | Rh7BG040100 Rh7CG042100 |
| rosa_wichuraiana | Rw7G003360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| AccB1I | GGYRCC | 1 cut(s) | 1634 |
| AciI | CCGC | 5 cut(s) | 7, 353, 579, 864, 957 |
| AclWI | GGATC | 1 cut(s) | 931 |
| AcsI | RAATTY | 4 cut(s) | 205, 282, 452, 1390 |
| AfaI | GTAC | 6 cut(s) | 165, 854, 903, 947, 1134, 1160 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 66, 1060 |
| AgsI | TTSAA | 9 cut(s) | 55, 214, 243, 370, 406, 555, 988, 1239, 1319 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 690, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 1443 |
| Alw26I | GTCTC | 1 cut(s) | 1077 |
| AlwI | GGATC | 1 cut(s) | 931 |
| Ama87I | CYCGRG | 2 cut(s) | 1060, 1182 |
| AoxI | GGCC | 2 cut(s) | 477, 1013 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| ApoI | RAATTY | 4 cut(s) | 205, 282, 452, 1390 |
| AseI | ATTAAT | 1 cut(s) | 1554 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 33, 1281 |
| AspLEI | GCGC | 1 cut(s) | 1495 |
| AspS9I | GGNCC | 2 cut(s) | 4, 478 |
| AsuHPI | GGTGA | 2 cut(s) | 1277, 1586 |
| AvaI | CYCGRG | 2 cut(s) | 1060, 1182 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 1 cut(s) | 1634 |
| BanII | GRGCYC | 1 cut(s) | 984 |
| BauI | CACGAG | 1 cut(s) | 1470 |
| Bbv12I | GWGCWC | 1 cut(s) | 1443 |
| BbvI | GCAGC | 1 cut(s) | 733 |
| BccI | CCATC | 3 cut(s) | 766, 1265, 1708 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1448, 1482 |
| BclI | TGATCA | 2 cut(s) | 117, 1360 |
| BcoDI | GTCTC | 1 cut(s) | 1077 |
| BfaI | CTAG | 2 cut(s) | 1002, 1484 |
| BfmI | CTRYAG | 2 cut(s) | 822, 1518 |
| BglII | AGATCT | 1 cut(s) | 763 |
| BisI | GCNGC | 2 cut(s) | 579, 747 |
| BlsI | GCNGC | 2 cut(s) | 580, 748 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 2 cut(s) | 1060, 1182 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 478 |
| BmiI | GGNNCC | 1 cut(s) | 1636 |
| BmrI | ACTGGG | 1 cut(s) | 80 |
| BmsI | GCATC | 8 cut(s) | 340, 588, 1197, 1390, 1439, 1461, 1663, 1708 |
| BmuI | ACTGGG | 1 cut(s) | 80 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1010 |
| BpuEI | CTTGAG | 1 cut(s) | 788 |
| Bsa29I | ATCGAT | 1 cut(s) | 1458 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1718 |
| BsaJI | CCNNGG | 1 cut(s) | 940 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 66, 1060 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| Bse3DI | GCAATG | 2 cut(s) | 538, 1625 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1718 |
| BseCI | ATCGAT | 1 cut(s) | 1458 |
| BseDI | CCNNGG | 1 cut(s) | 940 |
| BseGI | GGATG | 4 cut(s) | 901, 1454, 1551, 1693 |
| BseJI | GATNNNNATC | 1 cut(s) | 1718 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 66, 1060 |
| BseMI | GCAATG | 2 cut(s) | 538, 1625 |
| BseMII | CTCAG | 3 cut(s) | 594, 1299, 1767 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BseRI | GAGGAG | 3 cut(s) | 1502, 1522, 1720 |
| BseXI | GCAGC | 1 cut(s) | 733 |
| BsgI | GTGCAG | 1 cut(s) | 822 |
| BshFI | GGCC | 2 cut(s) | 479, 1015 |
| BshNI | GGYRCC | 1 cut(s) | 1634 |
| BshVI | ATCGAT | 1 cut(s) | 1458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1443 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1060, 1182 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 66, 1060 |
| BsmAI | GTCTC | 1 cut(s) | 1077 |
| BsnI | GGCC | 2 cut(s) | 479, 1015 |
| BsoBI | CYCGRG | 2 cut(s) | 1060, 1182 |
| Bsp1286I | GDGCHC | 2 cut(s) | 984, 1443 |
| Bsp1407I | TGTACA | 1 cut(s) | 163 |
| Bsp143I | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| Bsp19I | CCATGG | 1 cut(s) | 940 |
| BspACI | CCGC | 5 cut(s) | 7, 353, 579, 864, 957 |
| BspANI | GGCC | 2 cut(s) | 479, 1015 |
| BspCNI | CTCAG | 3 cut(s) | 595, 1300, 1766 |
| BspDI | ATCGAT | 1 cut(s) | 1458 |
| BspLI | GGNNCC | 1 cut(s) | 1636 |
| BspPI | GGATC | 1 cut(s) | 931 |
| BspQI | GCTCTTC | 2 cut(s) | 661, 989 |
| BspT107I | GGYRCC | 1 cut(s) | 1634 |
| BsrDI | GCAATG | 2 cut(s) | 538, 1625 |
| BsrGI | TGTACA | 1 cut(s) | 163 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| BssECI | CCNNGG | 1 cut(s) | 940 |
| BssMI | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| BssSI | CACGAG | 1 cut(s) | 1470 |
| BssT1I | CCWWGG | 1 cut(s) | 940 |
| Bst2BI | CACGAG | 1 cut(s) | 1470 |
| Bst4CI | ACNGT | 6 cut(s) | 218, 298, 494, 823, 1421, 1445 |
| Bst6I | CTCTTC | 2 cut(s) | 661, 989 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstAUI | TGTACA | 1 cut(s) | 163 |
| BstC8I | GCNNGC | 6 cut(s) | 11, 583, 959, 1051, 1254, 1467 |
| BstDEI | CTNAG | 6 cut(s) | 19, 603, 1010, 1045, 1308, 1753 |
| BstDSI | CCRYGG | 1 cut(s) | 940 |
| BstF5I | GGATG | 4 cut(s) | 901, 1454, 1551, 1693 |
| BstHHI | GCGC | 1 cut(s) | 1495 |
| BstKTI | GATC | 6 cut(s) | 120, 766, 939, 1001, 1363, 1645 |
| BstMAI | GTCTC | 1 cut(s) | 1077 |
| BstMBI | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 644 |
| BstNSI | RCATGY | 3 cut(s) | 589, 1256, 1359 |
| BstSFI | CTRYAG | 2 cut(s) | 822, 1518 |
| BstV1I | GCAGC | 1 cut(s) | 733 |
| BstX2I | RGATCY | 1 cut(s) | 763 |
| BstYI | RGATCY | 1 cut(s) | 763 |
| Bsu15I | ATCGAT | 1 cut(s) | 1458 |
| BsuRI | GGCC | 2 cut(s) | 479, 1015 |
| BsuTUI | ATCGAT | 1 cut(s) | 1458 |
| BtgI | CCRYGG | 1 cut(s) | 940 |
| BtsCI | GGATG | 4 cut(s) | 901, 1454, 1551, 1693 |
| BtsI | GCAGTG | 1 cut(s) | 834 |
| BtsIMutI | CAGTG | 5 cut(s) | 223, 472, 834, 839, 1441 |
| Cac8I | GCNNGC | 6 cut(s) | 11, 583, 959, 1051, 1254, 1467 |
| CfoI | GCGC | 1 cut(s) | 1495 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 478 |
| ClaI | ATCGAT | 1 cut(s) | 1458 |
| Csp6I | GTAC | 6 cut(s) | 164, 853, 902, 946, 1133, 1159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1227, 1262 |
| CviQI | GTAC | 6 cut(s) | 164, 853, 902, 946, 1133, 1159 |
| DdeI | CTNAG | 6 cut(s) | 19, 603, 1010, 1045, 1308, 1753 |
| DpnI | GATC | 6 cut(s) | 119, 765, 938, 1000, 1362, 1644 |
| DpnII | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| Eam1104I | CTCTTC | 2 cut(s) | 661, 989 |
| EarI | CTCTTC | 2 cut(s) | 661, 989 |
| Eco130I | CCWWGG | 1 cut(s) | 940 |
| Eco24I | GRGCYC | 1 cut(s) | 984 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco88I | CYCGRG | 2 cut(s) | 1060, 1182 |
| EcoO109I | RGGNCCY | 1 cut(s) | 478 |
| EcoRI | GAATTC | 1 cut(s) | 282 |
| EcoT14I | CCWWGG | 1 cut(s) | 940 |
| EcoT22I | ATGCAT | 1 cut(s) | 1454 |
| EcoT38I | GRGCYC | 1 cut(s) | 984 |
| ErhI | CCWWGG | 1 cut(s) | 940 |
| FauI | CCCGC | 2 cut(s) | 346, 950 |
| FbaI | TGATCA | 2 cut(s) | 117, 1360 |
| Fnu4HI | GCNGC | 2 cut(s) | 579, 747 |
| FokI | GGATG | 4 cut(s) | 908, 1461, 1558, 1700 |
| FriOI | GRGCYC | 1 cut(s) | 984 |
| Fsp4HI | GCNGC | 2 cut(s) | 579, 747 |
| FspBI | CTAG | 2 cut(s) | 1002, 1484 |
| GlaI | GCGC | 1 cut(s) | 1494 |
| GluI | GCNGC | 2 cut(s) | 579, 747 |
| HaeIII | GGCC | 2 cut(s) | 479, 1015 |
| HhaI | GCGC | 1 cut(s) | 1495 |
| Hin6I | GCGC | 1 cut(s) | 1493 |
| HinP1I | GCGC | 1 cut(s) | 1493 |
| HindIII | AAGCTT | 1 cut(s) | 123 |
| HinfI | GANTC | 3 cut(s) | 95, 994, 1277 |
| HphI | GGTGA | 2 cut(s) | 1277, 1586 |
| Hpy166II | GTNNAC | 1 cut(s) | 1611 |
| Hpy188I | TCNGA | 4 cut(s) | 993, 1389, 1704, 1762 |
| Hpy188III | TCNNGA | 5 cut(s) | 767, 968, 1002, 1294, 1723 |
| Hpy8I | GTNNAC | 1 cut(s) | 1611 |
| HpyAV | CCTTC | 8 cut(s) | 146, 491, 772, 1262, 1292, 1376, 1473, 1674 |
| HpyCH4III | ACNGT | 6 cut(s) | 218, 298, 494, 823, 1421, 1445 |
| HpyCH4IV | ACGT | 2 cut(s) | 76, 948 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 644 |
| HpyF3I | CTNAG | 6 cut(s) | 19, 603, 1010, 1045, 1308, 1753 |
| HpySE526I | ACGT | 2 cut(s) | 76, 948 |
| HspAI | GCGC | 1 cut(s) | 1493 |
| Ksp22I | TGATCA | 2 cut(s) | 117, 1360 |
| Kzo9I | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| LguI | GCTCTTC | 2 cut(s) | 661, 989 |
| LmnI | GCTCC | 3 cut(s) | 1173, 1707, 1735 |
| Lsp1109I | GCAGC | 1 cut(s) | 733 |
| LweI | GCATC | 8 cut(s) | 340, 588, 1197, 1390, 1439, 1461, 1663, 1708 |
| MaeI | CTAG | 2 cut(s) | 1002, 1484 |
| MaeII | ACGT | 2 cut(s) | 76, 948 |
| MaeIII | GTNAC | 4 cut(s) | 128, 418, 1330, 1648 |
| MalI | GATC | 6 cut(s) | 119, 765, 938, 1000, 1362, 1644 |
| MboI | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| MboII | GAAGA | 5 cut(s) | 346, 678, 976, 1647, 1652 |
| MflI | RGATCY | 1 cut(s) | 763 |
| MhlI | GDGCHC | 2 cut(s) | 984, 1443 |
| MluCI | AATT | 8 cut(s) | 205, 282, 310, 412, 452, 1080, 1239, 1390 |
| MmeI | TCCRAC | 2 cut(s) | 688, 1683 |
| MnlI | CCTC | 9 cut(s) | 297, 600, 695, 964, 1480, 1483, 1500, 1536, 1698 |
| Mph1103I | ATGCAT | 1 cut(s) | 1454 |
| MroXI | GAANNNNTTC | 2 cut(s) | 33, 1281 |
| MseI | TTAA | 5 cut(s) | 309, 591, 1040, 1554, 1766 |
| MslI | CAYNNNNRTG | 3 cut(s) | 171, 1095, 1460 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 644 |
| NcoI | CCATGG | 1 cut(s) | 940 |
| NdeII | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| NlaIV | GGNNCC | 1 cut(s) | 1636 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NsiI | ATGCAT | 1 cut(s) | 1454 |
| NspI | RCATGY | 3 cut(s) | 589, 1256, 1359 |
| PaeI | GCATGC | 1 cut(s) | 1256 |
| PciSI | GCTCTTC | 2 cut(s) | 661, 989 |
| PdmI | GAANNNNTTC | 2 cut(s) | 33, 1281 |
| PfeI | GAWTC | 3 cut(s) | 95, 994, 1277 |
| PkrI | GCNGC | 2 cut(s) | 580, 748 |
| PshBI | ATTAAT | 1 cut(s) | 1554 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 1 cut(s) | 1636 |
| PspPI | GGNCC | 2 cut(s) | 4, 478 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 542, 574 |
| PsuI | RGATCY | 1 cut(s) | 763 |
| RsaI | GTAC | 6 cut(s) | 165, 854, 903, 947, 1134, 1160 |
| RsaNI | GTAC | 6 cut(s) | 164, 853, 902, 946, 1133, 1159 |
| RseI | CAYNNNNRTG | 3 cut(s) | 171, 1095, 1460 |
| SapI | GCTCTTC | 2 cut(s) | 661, 989 |
| SaqAI | TTAA | 5 cut(s) | 309, 591, 1040, 1554, 1766 |
| SatI | GCNGC | 2 cut(s) | 579, 747 |
| Sau3AI | GATC | 6 cut(s) | 117, 763, 936, 998, 1360, 1642 |
| Sau96I | GGNCC | 2 cut(s) | 4, 478 |
| SduI | GDGCHC | 2 cut(s) | 984, 1443 |
| SfaNI | GCATC | 8 cut(s) | 340, 588, 1197, 1390, 1439, 1461, 1663, 1708 |
| SfcI | CTRYAG | 2 cut(s) | 822, 1518 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 171, 1095, 1460 |
| SmlI | CTYRAG | 1 cut(s) | 767 |
| SmoI | CTYRAG | 1 cut(s) | 767 |
| SphI | GCATGC | 1 cut(s) | 1256 |
| Sse9I | AATT | 8 cut(s) | 205, 282, 310, 412, 452, 1080, 1239, 1390 |
| SsiI | CCGC | 5 cut(s) | 7, 353, 579, 864, 957 |
| SspI | AATATT | 1 cut(s) | 916 |
| SspMI | CTAG | 2 cut(s) | 1002, 1484 |
| StyI | CCWWGG | 1 cut(s) | 940 |
| TaaI | ACNGT | 6 cut(s) | 218, 298, 494, 823, 1421, 1445 |
| TaiI | ACGT | 2 cut(s) | 79, 951 |
| TaqI | TCGA | 3 cut(s) | 348, 997, 1458 |
| TasI | AATT | 8 cut(s) | 205, 282, 310, 412, 452, 1080, 1239, 1390 |
| TatI | WGTACW | 3 cut(s) | 163, 852, 1132 |
| TauI | GCSGC | 1 cut(s) | 581 |
| TfiI | GAWTC | 3 cut(s) | 95, 994, 1277 |
| Tru1I | TTAA | 5 cut(s) | 309, 591, 1040, 1554, 1766 |
| Tru9I | TTAA | 5 cut(s) | 309, 591, 1040, 1554, 1766 |
| TscAI | CASTG | 5 cut(s) | 223, 472, 841, 846, 1448 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 1 cut(s) | 746 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspGWI | ACGGA | 1 cut(s) | 1092 |
| TspRI | CASTG | 5 cut(s) | 223, 472, 841, 846, 1448 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| VspI | ATTAAT | 1 cut(s) | 1554 |
| XapI | RAATTY | 4 cut(s) | 205, 282, 452, 1390 |
| XbaI | TCTAGA | 1 cut(s) | 1001 |
| XceI | RCATGY | 3 cut(s) | 589, 1256, 1359 |
| XmnI | GAANNNNTTC | 2 cut(s) | 33, 1281 |
| XspI | CTAG | 2 cut(s) | 1002, 1484 |
| Zsp2I | ATGCAT | 1 cut(s) | 1454 |