Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015266

Physical Location & Seq

Genomic Coordinates Reverse (-)

31985788 .. 31988290

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1180200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCGTTCCTGCTCCGCAATTCCGTCGCTTCCCATTTCCAGTCCCACTCACAGAGGGGGCAGAACGATTTGCTTTCCCAATCGCGCCGCCAGTTCCACGTCGAGCCAGGGCCCCGCGAGAAAGCTCTCTTGGCACCGGACCCGTCTTTAAAACGGTTCAAGTCGCATAAGAAGGGCGTGGCTCTAGTTAAAAGACTTGGAGATGTTCTTACCATTGTTATCGTTGCCGGCGCCTGCTATGAAATATATGTAAGAGCAGTAATGCGAGAAGAGGCTAGGCAACAGGCTAAGGAACAGGCAGGGGCTTCGGGTGCAAGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0048046 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

10.27

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47833 AT5G62575 AT5G62575
fragaria_vesca	FvH4_5g16500
malus_domestica	MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica	Prupe.5G178000_v2.0.a1
pyrus_communis	pycom06g15950 pycom14g15420
rosa_chinensis	RchiOBHm_Chr7g0179591
rosa_multiflora	Rmu_sc0005329.1_g000023
rosa_roxburghii	Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa	Rorug06G0426400
rosa_samantha	Rh7DG026400
rosa_wichuraiana	Rw7G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 230
AccII	CGCG	2 cut(s)	85, 117
AciI	CCGC	3 cut(s)	16, 88, 115
AcyI	GRCGYC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AoxI	GGCC	1 cut(s)	110
ApaI	GGGCCC	1 cut(s)	114
AspLEI	GCGC	3 cut(s)	87, 233, 320
AspS9I	GGNCC	3 cut(s)	110, 111, 139
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	2 cut(s)	133, 230
BanII	GRGCYC	1 cut(s)	114
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 288, 322
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	185, 276
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	110, 111, 139
BmiI	GGNNCC	5 cut(s)	112, 113, 135, 141, 232
BmrFI	CCNGG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	40, 91
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	40, 91
BseSI	GKGCMC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	85, 117
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	2 cut(s)	133, 230
BsiSI	CCGG	2 cut(s)	137, 228
BslFI	GGGAC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	112
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
BspACI	CCGC	3 cut(s)	16, 88, 115
BspANI	GGCC	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	85, 117
BspLI	GGNNCC	5 cut(s)	112, 113, 135, 141, 232
BspT107I	GGYRCC	2 cut(s)	133, 230
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	40, 91
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	107
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	229, 235, 316
BstDEI	CTNAG	1 cut(s)	288
BstFNI	CGCG	2 cut(s)	85, 117
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	3 cut(s)	87, 233, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 311
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	2 cut(s)	85, 117
BsuRI	GGCC	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	229, 235, 316
CfoI	GCGC	3 cut(s)	87, 233, 320
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	110, 111, 139
CviJI	RGCY	7 cut(s)	106, 112, 125, 182, 275, 287, 305
CviKI_1	RGCY	7 cut(s)	106, 112, 125, 182, 275, 287, 305
DdeI	CTNAG	1 cut(s)	288
DinI	GGCGCC	1 cut(s)	232
DraI	TTTAAA	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	110, 111
EcoRII	CCWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaiI	YATR	5 cut(s)	168, 240, 247, 249, 322
FaqI	GGGAC	1 cut(s)	28
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	185, 276
GlaI	GCGC	3 cut(s)	86, 232, 319
GluI	GCNGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	137, 228
HhaI	GCGC	3 cut(s)	87, 233, 320
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	3 cut(s)	85, 231, 318
HinP1I	GCGC	3 cut(s)	85, 231, 318
HpaII	CCGG	2 cut(s)	137, 228
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 311
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	3 cut(s)	85, 231, 318
KasI	GGCGCC	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	18
MaeI	CTAG	2 cut(s)	185, 276
MaeII	ACGT	1 cut(s)	99
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	19
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	48, 265
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	2 cut(s)	149, 189
MspI	CCGG	2 cut(s)	137, 228
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	85, 117
MwoI	GCNNNNNNNGC	2 cut(s)	131, 311
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	227
NlaIV	GGNNCC	5 cut(s)	112, 113, 135, 141, 232
PdiI	GCCGGC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	5 cut(s)	112, 113, 135, 141, 232
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	110, 111, 139
SaqAI	TTAA	2 cut(s)	149, 189
SatI	GCNGC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	110, 111, 139
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	2 cut(s)	102, 127
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	3 cut(s)	16, 88, 115
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	185, 276
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	149, 189
Tru9I	TTAA	2 cut(s)	149, 189
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	139
XspI	CTAG	2 cut(s)	185, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.