Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015266

Physical Location & Seq

Genomic Coordinates Forward (+)

65348565 .. 65350534

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGTTCCTGCTCAAAAATTCCGTCGCTTCACATTTCCGTCAGACGACGAAAAACGATTCACTTTCCCTCACGCGCCGCCAGTTCCACGTCGAACCTGGGGCTCGCGAGAAAGCTCTCTTGGCACCAGACCCGTCTCTCAGACGATTCAAGTCGCATAAGAAGGGTGTGTTGGCGATCAAAAGGATTGGGGAGGTTCTCACAGTTGTTGTTATTGCGGGTTGCTGCTATGAAATATACGTAAAAGCAGTGATGCGGGAGGAGGCTAGGGCACAGACAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0048046 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

10.24

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0015266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47833 AT5G62575 AT5G62575
fragaria_vesca	FvH4_5g16500
malus_domestica	MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica	Prupe.5G178000_v2.0.a1
pyrus_communis	pycom06g15950 pycom14g15420
rosa_chinensis	RchiOBHm_Chr7g0179591
rosa_multiflora	Rmu_sc0005329.1_g000023
rosa_roxburghii	Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa	Rorug06G0426400
rosa_samantha	Rh7DG026400
rosa_wichuraiana	Rw7G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	2 cut(s)	76, 108
AciI	CCGC	3 cut(s)	79, 218, 256
AcsI	RAATTY	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 155, 187
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	79, 226
BlsI	GCNGC	2 cut(s)	80, 227
Bme1390I	CCNGG	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	76, 108
BshNI	GGYRCC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	106, 274
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	3 cut(s)	79, 218, 256
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	76, 108
BspLI	GGNNCC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	140
BstFNI	CGCG	2 cut(s)	76, 108
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	274
BstSNI	TACGTA	1 cut(s)	241
BstUI	CGCG	2 cut(s)	76, 108
BstV1I	GCAGC	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	78
CviJI	RGCY	4 cut(s)	104, 116, 266, 284
CviKI_1	RGCY	4 cut(s)	104, 116, 266, 284
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco105I	TACGTA	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	141
FaiI	YATR	3 cut(s)	159, 231, 238
FauI	CCCGC	2 cut(s)	211, 249
Fnu4HI	GCNGC	2 cut(s)	79, 226
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	79, 226
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	79, 226
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	59, 147
Hpy188I	TCNGA	2 cut(s)	45, 143
Hpy188III	TCNNGA	1 cut(s)	107
Hpy99I	CGWCG	3 cut(s)	29, 52, 95
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	90, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	90, 240
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	23, 84, 95, 111, 141
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	2 cut(s)	90, 240
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	106, 274
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	4 cut(s)	80, 187, 253, 256
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	2 cut(s)	76, 108
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	126
NruI	TCGCGA	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	59, 147
PkrI	GCNGC	2 cut(s)	80, 227
Ppu21I	YACGTR	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	126
RruI	TCGCGA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	79, 226
Sau3AI	GATC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	106, 274
SetI	ASST	5 cut(s)	93, 100, 118, 198, 243
SfaNI	GCATC	1 cut(s)	243
SnaBI	TACGTA	1 cut(s)	241
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	3 cut(s)	79, 218, 256
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	93, 243
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	59, 147
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	2 cut(s)	13, 29
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.