Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015266

Physical Location & Seq

Genomic Coordinates Reverse (-)

18048244 .. 18049942

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGTTCCTGCTCCGCAATTCCGTCGCTTCCCATCTCCAATCCCACTCGCAGAGGGCGCAGAACGATTCGCTTTCCCAATCACGCCGCCAGTTCCACGTCGAGCCAGGGCCTCGCGAGAAAGCGCTCTTGGCAGCGGACCCGTCTTTAAAACGGTTCAAGTCGCATAAGAAGGGCGTGTCGCGAGTTAAAAGACTTGGAGATGTTCTTACCATTGTTGTCATTGCTGGTACGCAATTCTTTTGCTTGAGATTTAATCAGATGGTTATGAGTTGCTATGCACAAGCTGCTGCTATGAAATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0048046 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.52

Weight (kDa)

10.73

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47833 AT5G62575 AT5G62575
fragaria_vesca	FvH4_5g16500
malus_domestica	MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica	Prupe.5G178000_v2.0.a1
pyrus_communis	pycom06g15950 pycom14g15420
rosa_chinensis	RchiOBHm_Chr7g0179591
rosa_multiflora	Rmu_sc0005329.1_g000023
rosa_roxburghii	Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa	Rorug06G0426400
rosa_samantha	Rh7DG026400
rosa_wichuraiana	Rw7G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 184
AciI	CCGC	3 cut(s)	16, 88, 137
AfaI	GTAC	1 cut(s)	232
AfeI	AGCGCT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	134, 287, 290
AspLEI	GCGC	2 cut(s)	61, 127
AspS9I	GGNCC	2 cut(s)	110, 139
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	146, 274, 277
BccI	CCATC	2 cut(s)	42, 256
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	4 cut(s)	88, 135, 288, 291
BlsI	GCNGC	4 cut(s)	89, 136, 289, 292
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	110, 139
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	146, 274, 277
Bsh1236I	CGCG	2 cut(s)	117, 184
BshFI	GGCC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	112
Bsp68I	TCGCGA	2 cut(s)	117, 184
BspACI	CCGC	3 cut(s)	16, 88, 137
BspANI	GGCC	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	117, 184
BspLI	GGNNCC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstFNI	CGCG	2 cut(s)	117, 184
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	61, 127
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 131, 287
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	2 cut(s)	117, 184
BstV1I	GCAGC	3 cut(s)	146, 274, 277
BsuRI	GGCC	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	100
BtuMI	TCGCGA	2 cut(s)	117, 184
CfoI	GCGC	2 cut(s)	61, 127
Cfr13I	GGNCC	2 cut(s)	110, 139
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	3 cut(s)	106, 112, 287
CviKI_1	RGCY	3 cut(s)	106, 112, 287
CviQI	GTAC	1 cut(s)	231
DraI	TTTAAA	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	139
Eco47III	AGCGCT	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	106
FaiI	YATR	6 cut(s)	168, 269, 279, 296, 303, 305
Fnu4HI	GCNGC	4 cut(s)	88, 135, 288, 291
Fsp4HI	GCNGC	4 cut(s)	88, 135, 288, 291
GlaI	GCGC	2 cut(s)	60, 126
GluI	GCNGC	4 cut(s)	88, 135, 288, 291
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	61, 127
Hin6I	GCGC	2 cut(s)	59, 125
HinP1I	GCGC	2 cut(s)	59, 125
HinfI	GANTC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	116, 183
Hpy99I	CGWCG	2 cut(s)	29, 104
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 131, 287
HpySE526I	ACGT	1 cut(s)	99
HspAI	GCGC	2 cut(s)	59, 125
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	23, 93, 104, 120, 213
Lsp1109I	GCAGC	3 cut(s)	146, 274, 277
MaeII	ACGT	1 cut(s)	99
MluCI	AATT	2 cut(s)	19, 236
MnlI	CCTC	2 cut(s)	48, 123
MseI	TTAA	3 cut(s)	149, 189, 255
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	117, 184
MwoI	GCNNNNNNNGC	3 cut(s)	58, 131, 287
NlaIV	GGNNCC	1 cut(s)	141
NruI	TCGCGA	2 cut(s)	117, 184
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	89, 136, 289, 292
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	110, 139
RruI	TCGCGA	2 cut(s)	117, 184
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	149, 189, 255
SatI	GCNGC	4 cut(s)	88, 135, 288, 291
Sau96I	GGNCC	2 cut(s)	110, 139
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	2 cut(s)	102, 289
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	19, 236
SsiI	CCGC	3 cut(s)	16, 88, 137
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	19, 236
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	149, 189, 255
Tru9I	TTAA	3 cut(s)	149, 189, 255
TseI	GCWGC	3 cut(s)	134, 287, 290
TspGWI	ACGGA	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.