Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015266

Physical Location & Seq

Genomic Coordinates Reverse (-)

15036411 .. 15038642

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGTTCCTGCTTCGCAATTCCATCACTTCCCATTTCCAATCTCATTCACAGAGGGCACAAAACGACTCGCTTTCCCAATCGCGCCGTCAGTTCCATGTCGAACCAGGGCCTCGCGAGAAAGCTCTCTTGGCAGAGGACCCATCTCTAAAACGATTCAAATCGCATAAGAAGGGTGTGGCGAGAATTAAAAGACTTGGAGATGTTCTTACCGTTGTCGTTGTTGCTAGCTGCTGCTATGAAATATATGTAAGAGCAGTGATGCGAGAAGAGGCTAGGAAACAGGCAGGGGCTTCAGGTGCAAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0048046 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.5

Weight (kDa)

10.28

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47833 AT5G62575 AT5G62575
fragaria_vesca	FvH4_5g16500
malus_domestica	MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica	Prupe.5G178000_v2.0.a1
pyrus_communis	pycom06g15950 pycom14g15420
rosa_chinensis	RchiOBHm_Chr7g0179591
rosa_multiflora	Rmu_sc0005329.1_g000023
rosa_roxburghii	Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa	Rorug06G0426400
rosa_samantha	Rh7DG026400
rosa_wichuraiana	Rw7G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	85, 117
AcuI	CTGAAG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	125, 231
AluI	AGCT	2 cut(s)	125, 231
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	231, 234
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	110, 139
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	218, 221
BccI	CCATC	2 cut(s)	32, 151
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	228, 276
BisI	GCNGC	2 cut(s)	232, 235
BlsI	GCNGC	2 cut(s)	233, 236
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	110, 139
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	218, 221
Bsh1236I	CGCG	2 cut(s)	85, 117
BshFI	GGCC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp68I	TCGCGA	1 cut(s)	117
BspANI	GGCC	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	85, 117
BspLI	GGNNCC	1 cut(s)	141
BspOI	GCTAGC	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	85, 117
BstHHI	GCGC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 299
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	2 cut(s)	85, 117
BstV1I	GCAGC	2 cut(s)	218, 221
BsuRI	GGCC	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	110, 139
CviAII	CATG	2 cut(s)	98, 309
CviJI	RGCY	5 cut(s)	112, 125, 231, 275, 293
CviKI_1	RGCY	5 cut(s)	112, 125, 231, 275, 293
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	279
EcoO109I	RGGNCCY	2 cut(s)	110, 139
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	101, 312
FaiI	YATR	6 cut(s)	99, 168, 240, 247, 249, 310
FatI	CATG	2 cut(s)	97, 308
Fnu4HI	GCNGC	2 cut(s)	232, 235
Fsp4HI	GCNGC	2 cut(s)	232, 235
FspBI	CTAG	2 cut(s)	228, 276
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	232, 235
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	101, 312
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	68, 156
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	302, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 299
Hsp92II	CATG	2 cut(s)	101, 312
HspAI	GCGC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	23, 93, 120, 269, 273, 282
Lsp1109I	GCAGC	2 cut(s)	218, 221
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	228, 276
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	19, 186
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	48, 123, 130, 265
MseI	TTAA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	85, 117
MwoI	GCNNNNNNNGC	2 cut(s)	131, 299
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	101, 312
NlaIV	GGNNCC	1 cut(s)	141
NruI	TCGCGA	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	233, 236
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	110, 139
PspPPI	RGGWCCY	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	232, 235
Sau96I	GGNCC	2 cut(s)	110, 139
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	127, 233, 301
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	19, 186
SspMI	CTAG	2 cut(s)	228, 276
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	19, 186
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	231, 234
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	139
XspI	CTAG	2 cut(s)	228, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.