Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015266

Physical Location & Seq

Genomic Coordinates Reverse (-)

20428921 .. 20431008

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACACGTGGCACGAAGGGAAAGTGCACAAAAAATGGCCCTGATAGCAAAAGCTCGAGTCTTTGTGAAGTATTTGGTAGCTACCACTTCAAGCTCCGGTTATTGACTATGGCGTTCCTGCTCCGCAATTCCGTCGCTTCCCATTTCCAATCCCACTCACAGAGGGGGCAGAACGATTCGCTTTCCCAATCGCGCCGCCAGTTCCACGTCGAGCCAGGGCCTCGCGAGAAAGCTCTCTTGGCACCGGACCCATCTTTAAAACGGTTCAAGTCGCATAAGAAGGGCGTGGCTCTAGTTAAAAGACTTGGAGATGTTCTTACCATTGTTATCGTTGCTGGCGCCTGCTATGAAATATATGTAAGAGCAGTAATGCGAGAAGAGGCTAGGCAACAGGCTAAGGAACAGGCAGGGGCTTCAGGTGCAAGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0048046 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.73

Weight (kDa)

10.18

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47833 AT5G62575 AT5G62575
fragaria_vesca	FvH4_5g16500
malus_domestica	MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica	Prupe.5G178000_v2.0.a1
pyrus_communis	pycom06g15950 pycom14g15420
rosa_chinensis	RchiOBHm_Chr7g0179591
rosa_multiflora	Rmu_sc0005329.1_g000023
rosa_roxburghii	Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa	Rorug06G0426400
rosa_samantha	Rh7DG026400
rosa_wichuraiana	Rw7G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 338
AccII	CGCG	2 cut(s)	193, 225
AciI	CCGC	2 cut(s)	124, 196
AcuI	CTGAAG	1 cut(s)	399
AcvI	CACGTG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	91, 268
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	54, 81, 94, 233
AluI	AGCT	4 cut(s)	54, 81, 94, 233
Alw21I	GWGCWC	1 cut(s)	29
Alw44I	GTGCAC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	37, 218
ApaLI	GTGCAC	1 cut(s)	25
AspLEI	GCGC	3 cut(s)	195, 341, 428
AspS9I	GGNCC	3 cut(s)	38, 218, 247
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	241, 338
BbrPI	CACGTG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	2 cut(s)	293, 384
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	38, 218, 247
BmiI	GGNNCC	3 cut(s)	243, 249, 340
BmrFI	CCNGG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	2 cut(s)	96, 244
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	193, 225
BshFI	GGCC	2 cut(s)	39, 220
BshNI	GGYRCC	2 cut(s)	241, 338
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	97, 245
BsnI	GGCC	2 cut(s)	39, 220
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	2 cut(s)	124, 196
BspANI	GGCC	2 cut(s)	39, 220
BspFNI	CGCG	2 cut(s)	193, 225
BspLI	GGNNCC	3 cut(s)	243, 249, 340
BspT107I	GGYRCC	2 cut(s)	241, 338
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	337, 343, 424
BstDEI	CTNAG	1 cut(s)	396
BstFNI	CGCG	2 cut(s)	193, 225
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	3 cut(s)	195, 341, 428
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 239, 419
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	2 cut(s)	193, 225
BsuRI	GGCC	2 cut(s)	39, 220
BtrI	CACGTC	1 cut(s)	208
BtuMI	TCGCGA	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	337, 343, 424
CfoI	GCGC	3 cut(s)	195, 341, 428
Cfr13I	GGNCC	3 cut(s)	38, 218, 247
DdeI	CTNAG	1 cut(s)	396
DinI	GGCGCC	1 cut(s)	340
DraI	TTTAAA	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	399
Eco72I	CACGTG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	214
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
FaiI	YATR	6 cut(s)	110, 276, 348, 355, 357, 430
Fnu4HI	GCNGC	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	2 cut(s)	293, 384
GlaI	GCGC	3 cut(s)	194, 340, 427
GluI	GCNGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	39, 220
HapII	CCGG	2 cut(s)	97, 245
HhaI	GCGC	3 cut(s)	195, 341, 428
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	3 cut(s)	193, 339, 426
HinP1I	GCGC	3 cut(s)	193, 339, 426
HinfI	GANTC	2 cut(s)	58, 176
HpaII	CCGG	2 cut(s)	97, 245
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	2 cut(s)	137, 212
HpyAV	CCTTC	2 cut(s)	10, 274
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	2 cut(s)	7, 207
HpyCH4V	TGCA	2 cut(s)	27, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 239, 419
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	7, 207
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	3 cut(s)	193, 339, 426
KasI	GGCGCC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	99, 126
MaeI	CTAG	2 cut(s)	293, 384
MaeII	ACGT	2 cut(s)	7, 207
MboII	GAAGA	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	156, 231, 373
MseI	TTAA	2 cut(s)	257, 297
MspI	CCGG	2 cut(s)	97, 245
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	193, 225
MwoI	GCNNNNNNNGC	3 cut(s)	45, 239, 419
NarI	GGCGCC	1 cut(s)	339
NlaIV	GGNNCC	3 cut(s)	243, 249, 340
NruI	TCGCGA	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	66
PluTI	GGCGCC	1 cut(s)	342
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	214
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	243, 249, 340
PspPI	GGNCC	3 cut(s)	38, 218, 247
PspXI	VCTCGAGB	1 cut(s)	55
RruI	TCGCGA	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	257, 297
SatI	GCNGC	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	38, 218, 247
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	7 cut(s)	10, 56, 83, 96, 210, 235, 421
SfoI	GGCGCC	1 cut(s)	340
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	124, 196
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	293, 384
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	2 cut(s)	10, 210
TaqI	TCGA	2 cut(s)	56, 210
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	257, 297
Tru9I	TTAA	2 cut(s)	257, 297
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	2 cut(s)	293, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.