Rorug06G0426400

Pollen-specific protein SF3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015266
Physical Location & Seq
Reverse (-)
56322417 .. 56325058
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0426400.1

Sequence Viewer

Length: 1590 bp
ATGAAAAGGGAGAGCAGCAGTGGAAGTAGTGCTAGCGAGGACTCCAGTTATCTTGAAGAAGAAGTAAATGTGGACTCTGACGACGACTCAAATTATCTTGAAGGAGGAAACTCAGACGCCAATGTGTTCTCTGGGGAGGGTCAGTCTCCACGGCAGGGTTATACTTTACTGAGAGAAGAAGAAATTGGCCAACTTCAGGAGGATGATATTGCAGGAGTGTCTACTGTCCTGTCCATATCGAAATCCGCTGCATGCTTCCTACTATGTCACTTTAGTTGGAGGGTCAATAGACTGAAGGACGAATGGTTTTCTGATGAAGACAAAGTCCGGGAAGCAGCAGGCTTGTTGAGGAAGCCGGTATTCCTGCATCGATTAGGTAGTGTCAATTGCGGAATATGTTTTGATGACTATGACTATTCATGCGATGAATTAGCCGGTGGTACTATTTTCTCAGCTGCTTGTGGTCATCCTTTTTGTAAAGATTGTTGGACAGGTTATATTAGCACATCGATTAACGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGAACCATCTTGTAGTGCAGCAGTTGATCGGGATTTGATCCGAAATGTGTTGAAAAACCAACATGATCACGAGATTGAGAGGTATAAGCGCTACCTTCTGAGATCTTATGTCGAAAAGCATAAGCAGATGAAGTGGTGCCCTGCTCCTGACTGTGAGTATGCTGTCAAAGTGTTTGATGAAGATTTGACTGGAAATGGAAGCTGTTATGATGTTTCTTGCATCTGCTCAAATAGCTTCTGCTGGAATTGTGTTGAGGAGGTTCATAGTCCCGTTCAGTGCGACACTGTGGGAAAGTGGATAATGAAGAACAAGGATGATTCCCAGAATGCACAATGGATAGTGGTTAATACTAAGCCCTGTCCCAAGTGCAAAACACCGATTGAGAAGAACAATGGGTGTAATCACATGAGGTGCAGTCCGCCTTGTGGGCATCACTTTTGCTGGTTATGCCTCGGGCCACTTGGTTGCAAGTGCAATAGTTTCAATCGAGCTGCAAACCAAAATGCGAAGAAGGAGGAGAGTCAGAGTGAAAGGGAGAGGAAGAGGCTAAAGATGAGTTTAGAGAGATACAATCATTATTATGTGCGCTGGGCAAACAATCAAGCTTCAAAGAAGAAGGCAGTTGAGTCATTGCGTAAGGCGCAAACAGTGCACATCGTGAAACTTGCTAGCAAACCAATTCCCTTTCTTACCAAGACTAATGATTTCGAGTTCATTATGGAGGCATGGAAACAGATAATTGAATGTAGGCAGGTGATCAAATGGACCTATGCATATGGTTATTACATACCCGAGGAAAATAAATATGACAAGAAGCGGCAGCTGTTTGAGTACTTGCAGGGCCAAGCAGAGCACAGCCTGGAGAGGCTTCACCAATGTGCCGAGACTGAAATGATAGAGTTTGTCAAGGATTGGGCCCCGTTGGAAAAGTTCCCGGACTTCCGTCTAAAGCTCATACAATTGACAAATGTGACCGGTACTTATTTTAAGAAGCTGGTTACAGCCCTGGAGAATGGCCTCTCGGAGGTGGAGACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIM

Protein Analysis

529

Amino Acids

60.59

Weight (kDa)

5.94

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 64 - 103 3.4e-08 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 209 - 276 5.8e-15 IBR domain, a half RING-finger domain
IBR_2 PF22605 296 - 341 6.9e-11 IBR domain
IBR_1 PF22191 299 - 336 3.9e-10 IBR domain
Ariadne PF19422 371 - 523 1e-09 Ariadne domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47833 AT5G62575 AT5G62575
fragaria_vesca FvH4_5g16500
malus_domestica MD06G1180200.v1.1 MD14G1185300.v1.1
prunus_persica Prupe.5G178000_v2.0.a1
pyrus_communis pycom06g15950 pycom14g15420
rosa_chinensis RchiOBHm_Chr7g0179591
rosa_multiflora Rmu_sc0005329.1_g000023
rosa_roxburghii Rroxscaffold_155G00443900 Rroxscaffold_3G00273630
rosa_rugosa Rorug06G0426400
rosa_samantha Rh7DG026400
rosa_wichuraiana Rw7G002070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1291
Acc36I ACCTGC 1 cut(s) 1291
AccB1I GGYRCC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 221
AciI CCGC 4 cut(s) 246, 390, 968, 1366
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 179, 314
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 1207
AfaI GTAC 3 cut(s) 442, 1382, 1528
AfeI AGCGCT 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 155, 196, 974, 1573
AgeI ACCGGT 1 cut(s) 1523
AgsI TTSAA 6 cut(s) 56, 101, 601, 1033, 1158, 1292
AjnI CCWGG 2 cut(s) 1407, 1554
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AleI CACNNNNGTG 1 cut(s) 1425
AluBI AGCT 9 cut(s) 455, 750, 783, 1040, 1154, 1372, 1501, 1543, 1587
AluI AGCT 9 cut(s) 455, 750, 783, 1040, 1154, 1372, 1501, 1543, 1587
Alw21I GWGCWC 2 cut(s) 1203, 1404
Alw26I GTCTC 3 cut(s) 150, 1427, 1574
Alw44I GTGCAC 1 cut(s) 1199
AlwI GGATC 1 cut(s) 580
Ama87I CYCGRG 2 cut(s) 1001, 1340
Aor51HI AGCGCT 1 cut(s) 638
AoxI GGCC 5 cut(s) 187, 1004, 1390, 1464, 1564
ApaI GGGCCC 1 cut(s) 1468
ApaLI GTGCAC 1 cut(s) 1199
ApeKI GCWGC 7 cut(s) 15, 248, 335, 455, 566, 1040, 1369
AsiGI ACCGGT 1 cut(s) 1523
AspLEI GCGC 3 cut(s) 639, 1137, 1192
AspS9I GGNCC 6 cut(s) 521, 1004, 1314, 1390, 1464, 1465
AsuC2I CCSGG 3 cut(s) 329, 525, 1484
AsuHPI GGTGA 2 cut(s) 1315, 1412
AsuNHI GCTAGC 2 cut(s) 32, 1217
AvaI CYCGRG 2 cut(s) 1001, 1340
AvaII GGWCC 2 cut(s) 521, 1314
BaeGI GKGCMC 3 cut(s) 689, 1203, 1468
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 1468
BauI CACGAG 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 1203, 1404
BbvI GCAGC 7 cut(s) 27, 235, 347, 442, 578, 1027, 1381
BccI CCATC 2 cut(s) 512, 562
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 1409, 1556
BclI TGATCA 2 cut(s) 613, 1305
BcnI CCSGG 3 cut(s) 329, 525, 1484
BcoDI GTCTC 3 cut(s) 150, 1427, 1574
BfaI CTAG 4 cut(s) 33, 1218, 1584, 1588
BfoI RGCGCY 1 cut(s) 640
BfuAI ACCTGC 1 cut(s) 1291
BglI GCCNNNNNGGC 1 cut(s) 976
BglII AGATCT 1 cut(s) 650
BisI GCNGC 8 cut(s) 16, 249, 336, 456, 567, 1041, 1367, 1370
BlsI GCNGC 8 cut(s) 17, 250, 337, 457, 568, 1042, 1368, 1371
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 5 cut(s) 329, 525, 1409, 1484, 1556
Bme18I GGWCC 2 cut(s) 521, 1314
BmeT110I CYCGRG 2 cut(s) 1001, 1340
BmgT120I GGNCC 6 cut(s) 521, 1004, 1314, 1390, 1464, 1465
BmiI GGNNCC 3 cut(s) 686, 1466, 1467
BmrFI CCNGG 5 cut(s) 329, 525, 1409, 1484, 1556
BmsI GCATC 4 cut(s) 376, 525, 777, 988
BmtI GCTAGC 2 cut(s) 36, 1221
BoxI GACNNNNGTC 1 cut(s) 1491
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 3 cut(s) 28, 1430, 1577
BpuMI CCSGG 3 cut(s) 329, 525, 1484
Bsa29I ATCGAT 2 cut(s) 370, 509
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 4 cut(s) 149, 1000, 1341, 1554
BsaWI WCCGGW 1 cut(s) 1523
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 196, 974, 1573
Bse118I RCCGGY 3 cut(s) 355, 434, 1523
Bse1I ACTGG 2 cut(s) 45, 742
Bse3DI GCAATG 1 cut(s) 1178
BseBI CCWGG 2 cut(s) 1409, 1556
BseCI ATCGAT 2 cut(s) 370, 509
BseDI CCNNGG 4 cut(s) 149, 1000, 1341, 1554
BseGI GGATG 4 cut(s) 208, 466, 533, 868
BseLI CCNNNNNNNGG 4 cut(s) 155, 196, 974, 1573
BseMI GCAATG 1 cut(s) 1178
BseMII CTCAG 5 cut(s) 126, 161, 465, 530, 638
BseNI ACTGG 2 cut(s) 45, 742
BseRI GAGGAG 2 cut(s) 818, 1079
BseSI GKGCMC 3 cut(s) 689, 1203, 1468
BseXI GCAGC 7 cut(s) 27, 235, 347, 442, 578, 1027, 1381
BseYI CCCAGC 1 cut(s) 1137
BsgI GTGCAG 2 cut(s) 585, 982
BshFI GGCC 5 cut(s) 189, 1006, 1392, 1466, 1566
BshNI GGYRCC 1 cut(s) 684
BshTI ACCGGT 1 cut(s) 1523
BshVI ATCGAT 2 cut(s) 370, 509
BsiHKAI GWGCWC 2 cut(s) 1203, 1404
BsiHKCI CYCGRG 2 cut(s) 1001, 1340
BsiSI CCGG 6 cut(s) 328, 356, 435, 524, 1484, 1524
BslFI GGGAC 2 cut(s) 801, 894
BslI CCNNNNNNNGG 4 cut(s) 155, 196, 974, 1573
BsmAI GTCTC 3 cut(s) 150, 1427, 1574
BsmFI GGGAC 2 cut(s) 801, 894
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 5 cut(s) 189, 1006, 1392, 1466, 1566
BsoBI CYCGRG 2 cut(s) 1001, 1340
Bsp120I GGGCCC 1 cut(s) 1464
Bsp1286I GDGCHC 4 cut(s) 689, 1203, 1404, 1468
Bsp143I GATC 5 cut(s) 574, 585, 613, 650, 1305
BspACI CCGC 4 cut(s) 246, 390, 968, 1366
BspANI GGCC 5 cut(s) 189, 1006, 1392, 1466, 1566
BspCNI CTCAG 5 cut(s) 125, 162, 464, 531, 639
BspDI ATCGAT 2 cut(s) 370, 509
BspLI GGNNCC 3 cut(s) 686, 1466, 1467
BspMI ACCTGC 1 cut(s) 1291
BspOI GCTAGC 2 cut(s) 36, 1221
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 1178
BsrFI RCCGGY 3 cut(s) 355, 434, 1523
BsrI ACTGG 2 cut(s) 45, 742
BssAI RCCGGY 3 cut(s) 355, 434, 1523
BssECI CCNNGG 4 cut(s) 149, 1000, 1341, 1554
BssMI GATC 5 cut(s) 574, 585, 613, 650, 1305
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 617
Bst2BI CACGAG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 1409, 1556
Bst4CI ACNGT 4 cut(s) 226, 701, 835, 1198
Bst6I CTCTTC 1 cut(s) 1085
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 1198
BstC8I GCNNGC 4 cut(s) 34, 253, 340, 1219
BstDEI CTNAG 6 cut(s) 112, 170, 451, 539, 647, 900
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 1571
BstF5I GGATG 4 cut(s) 208, 466, 533, 868
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 3 cut(s) 639, 1137, 1192
BstKTI GATC 5 cut(s) 577, 588, 616, 653, 1308
BstMAI GTCTC 3 cut(s) 150, 1427, 1574
BstMBI GATC 5 cut(s) 574, 585, 613, 650, 1305
BstMWI GCNNNNNNNGC 5 cut(s) 780, 976, 996, 1189, 1198
BstNI CCWGG 2 cut(s) 1409, 1556
BstNSI RCATGY 1 cut(s) 255
BstPAI GACNNNNGTC 1 cut(s) 1491
BstSCI CCNGG 5 cut(s) 327, 523, 1407, 1482, 1554
BstSLI GKGCMC 3 cut(s) 689, 1203, 1468
BstV1I GCAGC 7 cut(s) 27, 235, 347, 442, 578, 1027, 1381
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
Bsu15I ATCGAT 2 cut(s) 370, 509
BsuRI GGCC 5 cut(s) 189, 1006, 1392, 1466, 1566
BsuTUI ATCGAT 2 cut(s) 370, 509
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 4 cut(s) 208, 466, 533, 868
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 4 cut(s) 25, 830, 831, 1203
BveI ACCTGC 1 cut(s) 1291
Cac8I GCNNGC 4 cut(s) 34, 253, 340, 1219
CfoI GCGC 3 cut(s) 639, 1137, 1192
Cfr10I RCCGGY 3 cut(s) 355, 434, 1523
Cfr13I GGNCC 6 cut(s) 521, 1004, 1314, 1390, 1464, 1465
ClaI ATCGAT 2 cut(s) 370, 509
CseI GACGC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 441, 1381, 1527
CspAI ACCGGT 1 cut(s) 1523
CviAII CATG 5 cut(s) 252, 420, 611, 955, 1275
CviQI GTAC 3 cut(s) 441, 1381, 1527
DdeI CTNAG 6 cut(s) 112, 170, 451, 539, 647, 900
DpnI GATC 5 cut(s) 576, 587, 615, 652, 1307
DpnII GATC 5 cut(s) 574, 585, 613, 650, 1305
DraIII CACNNNGTG 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 1085
EarI CTCTTC 1 cut(s) 1085
EciI GGCGGA 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 1468
Eco47I GGWCC 2 cut(s) 521, 1314
Eco47III AGCGCT 1 cut(s) 638
Eco57I CTGAAG 2 cut(s) 179, 314
Eco88I CYCGRG 2 cut(s) 1001, 1340
EcoNI CCTNNNNNAGG 1 cut(s) 1571
EcoO109I RGGNCCY 1 cut(s) 1465
EcoRII CCWGG 2 cut(s) 1407, 1554
EcoT22I ATGCAT 1 cut(s) 1324
EcoT38I GRGCYC 1 cut(s) 1468
FaeI CATG 5 cut(s) 255, 423, 614, 958, 1278
FaqI GGGAC 2 cut(s) 801, 894
FatI CATG 5 cut(s) 251, 419, 610, 954, 1274
FauNDI CATATG 1 cut(s) 1324
FbaI TGATCA 2 cut(s) 613, 1305
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 8 cut(s) 16, 249, 336, 456, 567, 1041, 1367, 1370
FokI GGATG 4 cut(s) 215, 453, 540, 875
FriOI GRGCYC 1 cut(s) 1468
Fsp4HI GCNGC 8 cut(s) 16, 249, 336, 456, 567, 1041, 1367, 1370
FspBI CTAG 4 cut(s) 33, 1218, 1584, 1588
GlaI GCGC 3 cut(s) 638, 1136, 1191
GluI GCNGC 8 cut(s) 16, 249, 336, 456, 567, 1041, 1367, 1370
GsaI CCCAGC 1 cut(s) 1141
GsuI CTGGAG 3 cut(s) 28, 1430, 1577
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 5 cut(s) 189, 1006, 1392, 1466, 1566
HapII CCGG 6 cut(s) 328, 356, 435, 524, 1484, 1524
HgaI GACGC 1 cut(s) 125
HhaI GCGC 3 cut(s) 639, 1137, 1192
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 255, 423, 614, 958, 1278
Hin6I GCGC 3 cut(s) 637, 1135, 1190
HinP1I GCGC 3 cut(s) 637, 1135, 1190
HindIII AAGCTT 1 cut(s) 1152
HinfI GANTC 6 cut(s) 41, 74, 86, 866, 1069, 1175
HpaII CCGG 6 cut(s) 328, 356, 435, 524, 1484, 1524
HphI GGTGA 2 cut(s) 1315, 1412
Hpy166II GTNNAC 3 cut(s) 73, 222, 1201
Hpy188I TCNGA 7 cut(s) 79, 115, 313, 590, 648, 1074, 1573
Hpy188III TCNNGA 8 cut(s) 53, 98, 197, 548, 578, 617, 695, 1207
Hpy8I GTNNAC 3 cut(s) 73, 222, 1201
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 95, 289, 653, 1054, 1159
HpyCH4III ACNGT 4 cut(s) 226, 701, 835, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 780, 976, 996, 1189, 1198
HpyF3I CTNAG 6 cut(s) 112, 170, 451, 539, 647, 900
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 255, 423, 614, 958, 1278
HspAI GCGC 3 cut(s) 637, 1135, 1190
Ksp22I TGATCA 2 cut(s) 613, 1305
Kzo9I GATC 5 cut(s) 574, 585, 613, 650, 1305
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 7 cut(s) 27, 235, 347, 442, 578, 1027, 1381
LweI GCATC 4 cut(s) 376, 525, 777, 988
MaeI CTAG 4 cut(s) 33, 1218, 1584, 1588
MaeIII GTNAC 3 cut(s) 266, 1519, 1546
MalI GATC 5 cut(s) 576, 587, 615, 652, 1307
MboI GATC 5 cut(s) 574, 585, 613, 650, 1305
MfeI CAATTG 2 cut(s) 385, 1508
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 4 cut(s) 689, 1203, 1404, 1468
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 8 cut(s) 91, 183, 385, 428, 793, 1227, 1287, 1508
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 5 cut(s) 35, 68, 80, 1078, 1184
MmeI TCCRAC 3 cut(s) 257, 467, 1452
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 1324
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 513, 894, 1536
MslI CAYNNNNRTG 2 cut(s) 1128, 1425
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 3 cut(s) 248, 455, 1372
MspI CCGG 6 cut(s) 328, 356, 435, 524, 1484, 1524
MspR9I CCNGG 5 cut(s) 329, 525, 1409, 1484, 1556
MunI CAATTG 2 cut(s) 385, 1508
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 2 cut(s) 1409, 1556
MwoI GCNNNNNNNGC 5 cut(s) 780, 976, 996, 1189, 1198
NciI CCSGG 3 cut(s) 329, 525, 1484
NdeI CATATG 1 cut(s) 1324
NdeII GATC 5 cut(s) 574, 585, 613, 650, 1305
NheI GCTAGC 2 cut(s) 32, 1217
NlaIII CATG 5 cut(s) 255, 423, 614, 958, 1278
NlaIV GGNNCC 3 cut(s) 686, 1466, 1467
NmeAIII GCCGAG 1 cut(s) 1456
NmuCI GTSAC 2 cut(s) 266, 1519
NsiI ATGCAT 1 cut(s) 1324
NspI RCATGY 1 cut(s) 255
OliI CACNNNNGTG 1 cut(s) 1425
PaeI GCATGC 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 1291
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 1 cut(s) 866
PflFI GACNNNGTC 1 cut(s) 323
PfoI TCCNGGA 3 cut(s) 327, 523, 1482
PinAI ACCGGT 1 cut(s) 1523
PkrI GCNGC 8 cut(s) 17, 250, 337, 457, 568, 1042, 1368, 1371
PleI GAGTC 5 cut(s) 35, 68, 80, 1077, 1183
PpsI GAGTC 5 cut(s) 35, 68, 80, 1077, 1183
PshAI GACNNNNGTC 1 cut(s) 1491
Psp6I CCWGG 2 cut(s) 1407, 1554
PspFI CCCAGC 1 cut(s) 1137
PspGI CCWGG 2 cut(s) 1407, 1554
PspN4I GGNNCC 3 cut(s) 686, 1466, 1467
PspOMI GGGCCC 1 cut(s) 1464
PspPI GGNCC 6 cut(s) 521, 1004, 1314, 1390, 1464, 1465
PsuI RGATCY 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 455, 1372
RsaI GTAC 3 cut(s) 442, 1382, 1528
RsaNI GTAC 3 cut(s) 441, 1381, 1527
RseI CAYNNNNRTG 2 cut(s) 1128, 1425
SaqAI TTAA 3 cut(s) 513, 894, 1536
SatI GCNGC 8 cut(s) 16, 249, 336, 456, 567, 1041, 1367, 1370
Sau3AI GATC 5 cut(s) 574, 585, 613, 650, 1305
Sau96I GGNCC 6 cut(s) 521, 1004, 1314, 1390, 1464, 1465
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 5 cut(s) 35, 68, 80, 1078, 1184
ScrFI CCNGG 5 cut(s) 329, 525, 1409, 1484, 1556
SduI GDGCHC 4 cut(s) 689, 1203, 1404, 1468
SfaNI GCATC 4 cut(s) 376, 525, 777, 988
SinI GGWCC 2 cut(s) 521, 1314
SmiMI CAYNNNNRTG 2 cut(s) 1128, 1425
SphI GCATGC 1 cut(s) 255
Sse9I AATT 8 cut(s) 91, 183, 385, 428, 793, 1227, 1287, 1508
SsiI CCGC 4 cut(s) 246, 390, 968, 1366
SspMI CTAG 4 cut(s) 33, 1218, 1584, 1588
StyD4I CCNGG 5 cut(s) 327, 523, 1407, 1482, 1554
TaaI ACNGT 4 cut(s) 226, 701, 835, 1198
TaqI TCGA 6 cut(s) 239, 370, 509, 660, 1036, 1257
TasI AATT 8 cut(s) 91, 183, 385, 428, 793, 1227, 1287, 1508
TatI WGTACW 1 cut(s) 1380
TauI GCSGC 1 cut(s) 1369
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 3 cut(s) 513, 894, 1536
Tru9I TTAA 3 cut(s) 513, 894, 1536
TscAI CASTG 4 cut(s) 25, 830, 838, 1203
TseFI GTSAC 2 cut(s) 266, 1519
TseI GCWGC 7 cut(s) 15, 248, 335, 455, 566, 1040, 1369
Tsp45I GTSAC 2 cut(s) 266, 1519
TspDTI ATGAA 9 cut(s) 17, 330, 408, 441, 692, 741, 800, 866, 1252
TspGWI ACGGA 1 cut(s) 1481
TspRI CASTG 4 cut(s) 25, 830, 838, 1203
Tth111I GACNNNGTC 1 cut(s) 323
VneI GTGCAC 1 cut(s) 1199
VpaK11BI GGWCC 2 cut(s) 521, 1314
XagI CCTNNNNNAGG 1 cut(s) 1571
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 4 cut(s) 33, 1218, 1584, 1588
ZrmI AGTACT 1 cut(s) 1382
Zsp2I ATGCAT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.