MD06G1181600.v1.1

Mannose-1-phosphate guanyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
32076123 .. 32079589
3467 bp
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UTR
Exon/CDS
Intron
MD06G1181600.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGGGCAGCTCGGACGAGAAGGTGGTTGCTGTGATCATGGTGGGTGGGCCCACTAAAGGAACTAGATTCCGGCCACTGTCACTGAATATTCCGAAGCCGCTTTTTCCATTAGCAGGGCAACCAATGGTTCATCATCCGATTTCCGCTTGTAAAAGGATTCCGAACCTCACTCAAATTTTCCTCATTGGTTTCTACGAGGAGCGTGAATTCGCGTTATATGTGTCCTCAATCTCCAATGAGCTTAAAGTCCCTGTCAGATACTTGAGGGAAGACAAGCCTCATGGATCAGCTGGTGGACTTTATAATTTCAGAGATCGGATCATGGAAGACAACCCGTCGCACATTGTGCTGTTGAATTGTGATGTTTGCTGCAGTTTTCCGCTTCCAGAAATGCTCGAGGCTCACAAAAAATATGGTGGGATGGGAACAATTCTTGTGATCAAGGTTTCCGCTGAATCAGCCAGTCAGTTTGGGGAACTGGTAGCTGATCCGGTCACCAATGAACTGTTGCATTACACCGAGAAGCCTGAGACTTTTGTCAGCGACAGGATAAATTGCGGTGTCTACATATTTACACCAGACATTTTTAACGCCGTTGAAGGTGTTTCCACTCAGTGGAAGGACAGAGCTGATTTAAGACGTCTCTCCAGCTTCGAATCCCTTCATTCAGCAACAAGGAACGCTCCCACACATTTTGTAAGGCTGGATCAAGATATCCTATCACCTCTTGCAGGGAAGAAGCAGTTATACACATATGAAACCTTGGACTTCTGGGAACAGATCAAAACTCCTGGAATGTCGTTAAAGTGTTCTGGTTTGTATCTTGCACAATTTCGATTCACCAATCCACATCTCTTGATGAGTGGAGATGGTACAAAGAGTGCCAGTATTACCGGTGATGTTTATGTTCATCCATCAGCAAAAGTACATCCAAGTGCTAAGATCGGTCCCAATGTCTCAATATCTGCAAATGCTCGCATAGGACCTGGTGCGAGGCTCATAAGTTGTATCATCCTTGACAACGTCGAAATTAAGGAAAACGCAGTTGTTATTCATTCAATTGTTGGATGGAAATCTTCAATCGGGAGATGGTCTCGCGTCCAGGCTACTGGGGATTACAATTCAAAGCTCGGGATTACGATCCTTGGTGAAGCAGTGACAGTTGAAGATGAAGTGGTGGTTATAAACAGCATTGTCCTGCCCCATAAGACGCTCAACGTCAGCGTTCAGGAAGAAATCATTCTGTGA

Protein Analysis

416

Amino Acids

45.79

Weight (kDa)

6.68

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 10 - 200 2.4e-31 Nucleotidyl transferase
LbH_EIF2B PF25084 293 - 368 3.1e-07 EIF2B subunit epsilon LbH domain
GMPPB_C PF25087 297 - 414 1.4e-37 GMPPB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 303, 1184
AatII GACGTC 1 cut(s) 643
AccB7I CCANNNNNTGG 1 cut(s) 615
AccI GTMKAC 1 cut(s) 564
AccII CGCG 2 cut(s) 212, 1098
AciI CCGC 5 cut(s) 98, 144, 380, 450, 558
AclWI GGATC 5 cut(s) 292, 326, 482, 714, 1135
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 2 cut(s) 174, 206
AcyI GRCGYC 1 cut(s) 640
AdeI CACNNNGTG 2 cut(s) 346, 615
AfaI GTAC 2 cut(s) 874, 927
AfiI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
AgeI ACCGGT 1 cut(s) 893
AgsI TTSAA 6 cut(s) 355, 599, 1059, 1080, 1125, 1166
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 3 cut(s) 790, 985, 1101
AluBI AGCT 7 cut(s) 9, 241, 290, 485, 629, 651, 1129
AluI AGCT 7 cut(s) 9, 241, 290, 485, 629, 651, 1129
Alw26I GTCTC 4 cut(s) 524, 647, 961, 1098
AlwI GGATC 5 cut(s) 292, 326, 482, 714, 1135
Ama87I CYCGRG 2 cut(s) 395, 1130
AoxI GGCC 2 cut(s) 47, 71
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 6, 369
ApoI RAATTY 2 cut(s) 174, 206
AsiGI ACCGGT 1 cut(s) 893
Asp700I GAANNNNTTC 2 cut(s) 660, 1239
AspS9I GGNCC 4 cut(s) 47, 48, 947, 983
AsuHPI GGTGA 5 cut(s) 487, 714, 832, 908, 1160
AsuII TTCGAA 1 cut(s) 654
AvaI CYCGRG 2 cut(s) 395, 1130
AvaII GGWCC 2 cut(s) 947, 983
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BbsI GAAGAC 2 cut(s) 276, 333
BbvI GCAGC 2 cut(s) 18, 356
BccI CCATC 5 cut(s) 415, 863, 922, 1062, 1083
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 3 cut(s) 792, 987, 1103
BclI TGATCA 2 cut(s) 33, 438
BcoDI GTCTC 4 cut(s) 524, 647, 961, 1098
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 3 cut(s) 7, 98, 370
BlsI GCNGC 3 cut(s) 8, 99, 371
Bme1390I CCNGG 3 cut(s) 792, 987, 1103
Bme18I GGWCC 2 cut(s) 947, 983
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 2 cut(s) 395, 1130
BmgT120I GGNCC 4 cut(s) 47, 48, 947, 983
BmiI GGNNCC 2 cut(s) 49, 949
BmrFI CCNGG 3 cut(s) 792, 987, 1103
BmrI ACTGGG 1 cut(s) 1119
BmuI ACTGGG 1 cut(s) 1119
BoxI GACNNNNGTC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 276, 333
BplI GAGNNNNNCTC 2 cut(s) 1078, 1110
BpmI CTGGAG 1 cut(s) 631
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 283
BsaBI GATNNNNATC 2 cut(s) 1072, 1139
BsaHI GRCGYC 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 762, 1144
BsaWI WCCGGW 2 cut(s) 490, 893
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 4 cut(s) 462, 483, 885, 1114
Bse8I GATNNNNATC 2 cut(s) 1072, 1139
BseBI CCWGG 3 cut(s) 792, 987, 1103
BseDI CCNNGG 2 cut(s) 762, 1144
BseGI GGATG 6 cut(s) 133, 426, 910, 928, 1011, 1073
BseJI GATNNNNATC 2 cut(s) 1072, 1139
BseLI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BseMII CTCAG 2 cut(s) 519, 626
BseNI ACTGG 4 cut(s) 462, 483, 885, 1114
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 18, 356
Bsh1236I CGCG 2 cut(s) 212, 1098
BshFI GGCC 2 cut(s) 49, 73
BshTI ACCGGT 1 cut(s) 893
BsiHKCI CYCGRG 2 cut(s) 395, 1130
BsiSI CCGG 3 cut(s) 70, 491, 894
BslFI GGGAC 2 cut(s) 233, 933
BslI CCNNNNNNNGG 4 cut(s) 56, 113, 615, 731
BsmAI GTCTC 4 cut(s) 524, 647, 961, 1098
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 2 cut(s) 233, 933
BsnI GGCC 2 cut(s) 49, 73
Bso31I GGTCTC 1 cut(s) 1098
BsoBI CYCGRG 2 cut(s) 395, 1130
Bsp119I TTCGAA 1 cut(s) 654
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 5 cut(s) 98, 144, 380, 450, 558
BspANI GGCC 2 cut(s) 49, 73
BspCNI CTCAG 2 cut(s) 520, 625
BspFNI CGCG 2 cut(s) 212, 1098
BspLI GGNNCC 2 cut(s) 49, 949
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 5 cut(s) 292, 326, 482, 714, 1135
BspT104I TTCGAA 1 cut(s) 654
BspTNI GGTCTC 1 cut(s) 1098
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 4 cut(s) 462, 483, 885, 1114
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 2 cut(s) 762, 1144
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 762, 1144
Bst2UI CCWGG 3 cut(s) 792, 987, 1103
Bst4CI ACNGT 3 cut(s) 78, 507, 1162
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 976
BstDEI CTNAG 3 cut(s) 528, 612, 939
BstEII GGTNACC 1 cut(s) 493
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 6 cut(s) 133, 426, 910, 928, 1011, 1073
BstFNI CGCG 2 cut(s) 212, 1098
BstMAI GTCTC 4 cut(s) 524, 647, 961, 1098
BstMWI GCNNNNNNNGC 2 cut(s) 346, 458
BstNI CCWGG 3 cut(s) 792, 987, 1103
BstPAI GACNNNNGTC 1 cut(s) 536
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 790, 985, 1101
BstSFI CTRYAG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 2 cut(s) 212, 1098
BstV1I GCAGC 2 cut(s) 18, 356
BstV2I GAAGAC 2 cut(s) 276, 333
BstXI CCANNNNNNTGG 1 cut(s) 1109
BsuRI GGCC 2 cut(s) 49, 73
BtsCI GGATG 6 cut(s) 133, 426, 910, 928, 1011, 1073
BtsI GCAGTG 1 cut(s) 1161
BtsIMutI CAGTG 4 cut(s) 74, 80, 620, 1161
Cac8I GCNNGC 1 cut(s) 976
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 47, 48, 947, 983
CseI GACGC 2 cut(s) 1087, 1219
CsiI ACCWGGT 1 cut(s) 985
Csp6I GTAC 2 cut(s) 873, 926
CspAI ACCGGT 1 cut(s) 893
CspCI CAANNNNNGTGG 4 cut(s) 676, 711, 837, 872
CviAII CATG 3 cut(s) 37, 281, 322
CviQI GTAC 2 cut(s) 873, 926
DdeI CTNAG 3 cut(s) 528, 612, 939
DraIII CACNNNGTG 2 cut(s) 346, 615
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 71
Eam1105I GACNNNNNGTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 762, 1144
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 2 cut(s) 947, 983
Eco88I CYCGRG 2 cut(s) 395, 1130
Eco91I GGTNACC 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 983
EcoO65I GGTNACC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 790, 985, 1101
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 2 cut(s) 762, 1144
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 762, 1144
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 3 cut(s) 40, 284, 325
FaqI GGGAC 2 cut(s) 233, 933
FatI CATG 3 cut(s) 36, 280, 321
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 2 cut(s) 33, 438
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 7, 98, 370
FokI GGATG 6 cut(s) 120, 433, 897, 915, 998, 1080
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 7, 98, 370
FspBI CTAG 1 cut(s) 63
GluI GCNGC 3 cut(s) 7, 98, 370
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 2 cut(s) 49, 73
HapII CCGG 3 cut(s) 70, 491, 894
HgaI GACGC 2 cut(s) 1087, 1219
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 3 cut(s) 40, 284, 325
HinfI GANTC 5 cut(s) 66, 157, 455, 656, 837
HpaII CCGG 3 cut(s) 70, 491, 894
HphI GGTGA 5 cut(s) 487, 714, 832, 908, 1160
Hpy166II GTNNAC 2 cut(s) 296, 565
Hpy188I TCNGA 7 cut(s) 13, 93, 138, 162, 257, 311, 318
Hpy188III TCNNGA 6 cut(s) 386, 710, 856, 1084, 1132, 1229
Hpy8I GTNNAC 2 cut(s) 296, 565
Hpy99I CGWCG 2 cut(s) 340, 1028
HpyAV CCTTC 4 cut(s) 13, 593, 613, 671
HpyCH4III ACNGT 3 cut(s) 78, 507, 1162
HpyCH4IV ACGT 3 cut(s) 640, 1023, 1218
HpyCH4V TGCA 5 cut(s) 372, 511, 731, 827, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 458
HpyF3I CTNAG 3 cut(s) 528, 612, 939
HpySE526I ACGT 3 cut(s) 640, 1023, 1218
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 3 cut(s) 40, 284, 325
Ksp22I TGATCA 2 cut(s) 33, 438
LmnI GCTCC 2 cut(s) 199, 688
Lsp1109I GCAGC 2 cut(s) 18, 356
MabI ACCWGGT 1 cut(s) 985
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 640, 1023, 1218
MaeIII GTNAC 3 cut(s) 78, 493, 1156
MboII GAAGA 6 cut(s) 281, 338, 748, 1068, 1178, 1244
MfeI CAATTG 1 cut(s) 1059
MhlI GDGCHC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 1045
MnlI CCTC 9 cut(s) 176, 190, 191, 235, 258, 288, 391, 735, 987
MroXI GAANNNNTTC 2 cut(s) 660, 1239
MseI TTAA 5 cut(s) 243, 588, 635, 803, 1032
MslI CAYNNNNRTG 1 cut(s) 933
MspA1I CMGCKG 2 cut(s) 290, 452
MspI CCGG 3 cut(s) 70, 491, 894
MspR9I CCNGG 3 cut(s) 792, 987, 1103
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 3 cut(s) 792, 987, 1103
MvnI CGCG 2 cut(s) 212, 1098
MwoI GCNNNNNNNGC 2 cut(s) 346, 458
NdeI CATATG 1 cut(s) 754
NlaIII CATG 3 cut(s) 40, 284, 325
NlaIV GGNNCC 2 cut(s) 49, 949
NmuCI GTSAC 3 cut(s) 78, 493, 1156
NspV TTCGAA 1 cut(s) 654
PaeR7I CTCGAG 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 660, 1239
PfeI GAWTC 5 cut(s) 66, 157, 455, 656, 837
PflFI GACNNNGTC 1 cut(s) 1022
PflMI CCANNNNNTGG 1 cut(s) 615
PfoI TCCNGGA 1 cut(s) 790
PinAI ACCGGT 1 cut(s) 893
PkrI GCNGC 3 cut(s) 8, 99, 371
PpuMI RGGWCCY 1 cut(s) 983
PshAI GACNNNNGTC 1 cut(s) 536
PsiI TTATAA 2 cut(s) 303, 1184
Psp5II RGGWCCY 1 cut(s) 983
Psp6I CCWGG 3 cut(s) 790, 985, 1101
PspEI GGTNACC 1 cut(s) 493
PspGI CCWGG 3 cut(s) 790, 985, 1101
PspN4I GGNNCC 2 cut(s) 49, 949
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 4 cut(s) 47, 48, 947, 983
PspPPI RGGWCCY 1 cut(s) 983
PspXI VCTCGAGB 1 cut(s) 395
PstI CTGCAG 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 1022
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 874, 927
RsaNI GTAC 2 cut(s) 873, 926
RseI CAYNNNNRTG 1 cut(s) 933
SaqAI TTAA 5 cut(s) 243, 588, 635, 803, 1032
SatI GCNGC 3 cut(s) 7, 98, 370
Sau96I GGNCC 4 cut(s) 47, 48, 947, 983
ScrFI CCNGG 3 cut(s) 792, 987, 1103
SduI GDGCHC 1 cut(s) 51
SexAI ACCWGGT 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 370
Sfr274I CTCGAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 654
SinI GGWCC 2 cut(s) 947, 983
SlaI CTCGAG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 2 cut(s) 262, 395
SmoI CTYRAG 2 cut(s) 262, 395
SsiI CCGC 5 cut(s) 98, 144, 380, 450, 558
SspI AATATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 790, 985, 1101
StyI CCWWGG 2 cut(s) 762, 1144
TaaI ACNGT 3 cut(s) 78, 507, 1162
TaiI ACGT 3 cut(s) 643, 1026, 1221
TaqI TCGA 4 cut(s) 396, 654, 835, 1026
TaqII GACCGA 1 cut(s) 935
TatI WGTACW 1 cut(s) 925
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 5 cut(s) 66, 157, 455, 656, 837
Tru1I TTAA 5 cut(s) 243, 588, 635, 803, 1032
Tru9I TTAA 5 cut(s) 243, 588, 635, 803, 1032
TscAI CASTG 4 cut(s) 81, 87, 620, 1161
TseFI GTSAC 3 cut(s) 78, 493, 1156
TseI GCWGC 2 cut(s) 6, 369
Tsp45I GTSAC 3 cut(s) 78, 493, 1156
TspDTI ATGAA 7 cut(s) 119, 516, 653, 771, 899, 1043, 1185
TspRI CASTG 4 cut(s) 81, 87, 620, 1161
Tth111I GACNNNGTC 1 cut(s) 1022
Van91I CCANNNNNTGG 1 cut(s) 615
VpaK11BI GGWCC 2 cut(s) 947, 983
XagI CCTNNNNNAGG 1 cut(s) 729
XapI RAATTY 2 cut(s) 174, 206
XhoI CTCGAG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 2 cut(s) 660, 1239
XspI CTAG 1 cut(s) 63
ZraI GACGTC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.