Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016496

Physical Location & Seq

Genomic Coordinates Forward (+)

32934279 .. 32934914

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1194700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAAGGCGATGAACGAAGGCATCGGATGCAGCCCCGTTTCACTTGTTGCACTTCTCTCAGTCCTAATCATTCTTAACTGGCTCATTGTACTGCACTTCCAATCGAATTTACGCTACTTGTTTTTATGTTTCCTTTGCGAAGTTATGCAGGTTAAGACCATTTTCCAAAGAAGTTGCACTGATGAGAAAGTATGTGAGCACAAACCATCCAAAGGAGTTGAAACCAACTCTACAACAAGTTCTGATCAAGTCCCCTCGATTCATGCCGCAGAGATTAGTTACACTCGCGAAAATGTTGTAGATGGAAAAAAGAATCTGTGTTTAGGAGAACTAGGACTAGTGATGGAGAAACTAGAAACATTAAGTGAGGGGGAGGGAGGCTCGAAGGAGATTGCTAACTTGTTTGAGGAGGTCCCAAGCTTGGAGGAAGTAAAAGAAGCTTTTCATGTGTTTGATGAGAATGAGGATGGATTCATTGATGCCGGGGAGGTAAAGAAGGTTCTCTCTGTATTGGGTTTCGTTGAAGCTTCGGAAGTGGAATGCGAAAGGATGATCAAGTCGTTTGATGATAACGGAGATGGACGCATAGATTTCAATGAGTTTGTTAAGCTCATGGAGAACAGCTTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_8

Protein Analysis

212

Amino Acids

23.61

Weight (kDa)

4.59

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	143 - 206	7.9e-15	EF-hand domain pair
EF-hand_6	PF13405	144 - 173	1.8e-06	EF-hand domain
EF-hand_8	PF13833	156 - 208	1.2e-06	EF-hand domain pair
EF-hand_1	PF00036	181 - 207	1.5e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47480
fragaria_vesca	FvH4_5g14810
malus_domestica	MD06G1194700.v1.1 MD14G1201700.v1.1
prunus_persica	Prupe.5G194800_v2.0.a1
pyrus_communis	pycom14g16710
rosa_chinensis	RchiOBHm_Chr7g0181581
rosa_multiflora	Rmu_sc0000988.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271880
rosa_samantha	Rh7AG044600 Rh7BG043600 Rh7CG045400 Rh7DG044200
rosa_wichuraiana	Rw7G003700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	270, 631
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	215, 424
AgsI	TTSAA	3 cut(s)	224, 527, 598
AhlI	ACTAGT	1 cut(s)	340
AluBI	AGCT	5 cut(s)	423, 443, 530, 613, 627
AluI	AGCT	5 cut(s)	423, 443, 530, 613, 627
Alw21I	GWGCWC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	109
Asp700I	GAANNNNTTC	2 cut(s)	444, 626
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	5 cut(s)	217, 299, 340, 464, 575
BclI	TGATCA	2 cut(s)	247, 555
BcnI	CCSGG	1 cut(s)	487
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	3 cut(s)	335, 341, 356
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	34, 270
BlsI	GCNGC	2 cut(s)	35, 271
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	3 cut(s)	20, 33, 472
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpuMI	CCSGG	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 424
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	4 cut(s)	35, 209, 475, 558
BseLI	CCNNNNNNNGG	2 cut(s)	215, 424
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	239, 401
BslI	CCNNNNNNNGG	2 cut(s)	215, 424
BsmFI	GGGAC	2 cut(s)	239, 401
BsmI	GAATGC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	247, 555
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	2 cut(s)	270, 631
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	247, 555
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	35, 209, 475, 558
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	250, 558
BstMBI	GATC	2 cut(s)	247, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	35, 209, 475, 558
BtsIMutI	CAGTG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	266, 449, 616
CviJI	RGCY	8 cut(s)	36, 85, 384, 423, 443, 530, 613, 627
CviKI_1	RGCY	8 cut(s)	36, 85, 384, 423, 443, 530, 613, 627
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	249, 557
DpnII	GATC	2 cut(s)	247, 555
Eco47I	GGWCC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	415
FaeI	CATG	3 cut(s)	269, 452, 619
FaiI	YATR	7 cut(s)	130, 149, 196, 267, 450, 590, 617
FaqI	GGGAC	2 cut(s)	239, 401
FatI	CATG	3 cut(s)	265, 448, 615
FbaI	TGATCA	2 cut(s)	247, 555
Fnu4HI	GCNGC	2 cut(s)	34, 270
FokI	GGATG	4 cut(s)	42, 196, 482, 565
Fsp4HI	GCNGC	2 cut(s)	34, 270
FspBI	CTAG	3 cut(s)	335, 341, 356
GluI	GCNGC	2 cut(s)	34, 270
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	269, 452, 619
HindIII	AAGCTT	3 cut(s)	421, 441, 528
HinfI	GANTC	3 cut(s)	262, 316, 474
HpaII	CCGG	1 cut(s)	486
Hpy188I	TCNGA	3 cut(s)	29, 247, 535
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	14, 382, 493
HpyCH4V	TGCA	5 cut(s)	33, 53, 97, 151, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	269, 452, 619
Ksp22I	TGATCA	2 cut(s)	247, 555
Kzo9I	GATC	2 cut(s)	247, 555
LpnPI	CCDG	3 cut(s)	67, 137, 499
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	3 cut(s)	20, 33, 472
MaeI	CTAG	3 cut(s)	335, 341, 356
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	249, 557
MboI	GATC	2 cut(s)	247, 555
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	109
MnlI	CCTC	9 cut(s)	268, 364, 370, 374, 403, 406, 421, 460, 484
MroXI	GAANNNNTTC	2 cut(s)	444, 626
MseI	TTAA	4 cut(s)	78, 156, 365, 609
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	487
Mva1269I	GAATGC	1 cut(s)	548
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	247, 555
NlaIII	CATG	3 cut(s)	269, 452, 619
NlaIV	GGNNCC	1 cut(s)	417
NruI	TCGCGA	1 cut(s)	291
PctI	GAATGC	1 cut(s)	548
PdmI	GAANNNNTTC	2 cut(s)	444, 626
PfeI	GAWTC	3 cut(s)	262, 316, 474
PkrI	GCNGC	2 cut(s)	35, 271
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	78, 156, 365, 609
SatI	GCNGC	2 cut(s)	34, 270
Sau3AI	GATC	2 cut(s)	247, 555
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	9 cut(s)	156, 417, 425, 445, 495, 504, 532, 615, 629
SfaNI	GCATC	3 cut(s)	20, 33, 472
SinI	GGWCC	1 cut(s)	415
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	270, 631
SspMI	CTAG	3 cut(s)	335, 341, 356
StyD4I	CCNGG	1 cut(s)	485
TaqI	TCGA	3 cut(s)	107, 260, 386
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	262, 316, 474
Tru1I	TTAA	4 cut(s)	78, 156, 365, 609
Tru9I	TTAA	4 cut(s)	78, 156, 365, 609
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	29, 254, 437, 466
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	109
XmnI	GAANNNNTTC	2 cut(s)	444, 626
XspI	CTAG	3 cut(s)	335, 341, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.