Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016496

Physical Location & Seq

Genomic Coordinates Forward (+)

2759064 .. 2759645

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGAAGACATTAATGGATGAAGCAATTGCCAGCAGCTCCATTGCACTTGTTGGAGTGGTTCAGTTTTTCTTAATGATTATTAAGTGGCTCATTGTGCAATTCTTGCTTCACTTGTCAAGTTTAAGGTATGCACTTCAATTCTTTGTAATTAATTGTGGTGTGAACAATGTTAACTTCGATGATCAGACCAAGATCACAACCGAGAAAGCTTGCACTTACAAAGTAGGTGTCGAAGAGAACACGAAAGACTTGGGTGAAAAGAAACTGTGTTTAGGAGAATTAGCATCGGTTATGGAGAACCTGGGAAGTCTATGCGGTGATAATGGGTCTAAGGAGATGGCTGACTTGCTTGAGGAGGAACCCAGCTTGGAGGAAGTAAAAGAAGCCTTCCATTTGTTTGATGAAAATACCGATGGGTTCATCGATGCAGGGGAGATCAAGAAGGTTCTCCATGTATTAGGTTTCGTCCAAGCTTCGGAGTCAGAATGCAAAAGAATGATCAAGACATTCGATCACAATGGAGATGGACGTATAGACTTTGAGGAATTTGTTAAGCTCATGGAGGATAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_8

Protein Analysis

193

Amino Acids

21.67

Weight (kDa)

4.57

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	125 - 188	5.2e-16	EF-hand domain pair
EF-hand_6	PF13405	126 - 155	1e-05	EF-hand domain
EF-hand_8	PF13833	140 - 190	2.1e-08	EF-hand domain pair
EF-hand_1	PF00036	163 - 189	1.2e-08	EF hand domain
EF-hand_5	PF13202	168 - 188	7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47480
fragaria_vesca	FvH4_5g14810
malus_domestica	MD06G1194700.v1.1 MD14G1201700.v1.1
prunus_persica	Prupe.5G194800_v2.0.a1
pyrus_communis	pycom14g16710
rosa_chinensis	RchiOBHm_Chr7g0181581
rosa_multiflora	Rmu_sc0000988.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271880
rosa_samantha	Rh7AG044600 Rh7BG043600 Rh7CG045400 Rh7DG044200
rosa_wichuraiana	Rw7G003700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	6 cut(s)	39, 212, 369, 476, 559, 573
AluI	AGCT	6 cut(s)	39, 212, 369, 476, 559, 573
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AseI	ATTAAT	2 cut(s)	14, 153
AsuHPI	GGTGA	3 cut(s)	16, 269, 332
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	3 cut(s)	334, 410, 521
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	184, 501
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	296, 418
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	494
Bsp143I	GATC	5 cut(s)	184, 195, 438, 501, 514
BspACI	CCGC	1 cut(s)	318
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	184, 195, 438, 501, 514
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	34, 214
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	5 cut(s)	187, 198, 441, 504, 517
BstMBI	GATC	5 cut(s)	184, 195, 438, 501, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 106
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	34, 214
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	2 cut(s)	455, 562
CviJI	RGCY	9 cut(s)	39, 91, 212, 344, 369, 389, 476, 559, 573
CviKI_1	RGCY	9 cut(s)	39, 91, 212, 344, 369, 389, 476, 559, 573
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	5 cut(s)	186, 197, 440, 503, 516
DpnII	GATC	5 cut(s)	184, 195, 438, 501, 514
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	458, 565
FaiI	YATR	6 cut(s)	132, 296, 316, 456, 536, 563
FatI	CATG	2 cut(s)	454, 561
FbaI	TGATCA	2 cut(s)	184, 501
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	37
GsaI	CCCAGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	458, 565
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	210, 474
HinfI	GANTC	1 cut(s)	482
HpaI	GTTAAC	1 cut(s)	175
HphI	GGTGA	3 cut(s)	16, 269, 332
Hpy166II	GTNNAC	2 cut(s)	166, 175
Hpy188I	TCNGA	3 cut(s)	189, 481, 487
Hpy188III	TCNNGA	2 cut(s)	442, 505
Hpy8I	GTNNAC	2 cut(s)	166, 175
HpyAV	CCTTC	2 cut(s)	400, 439
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	6 cut(s)	47, 100, 134, 216, 431, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 106
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	458, 565
Ksp22I	TGATCA	2 cut(s)	184, 501
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	184, 195, 438, 501, 514
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	46, 290, 317, 379, 417
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	2 cut(s)	296, 418
MaeII	ACGT	1 cut(s)	532
MalI	GATC	5 cut(s)	186, 197, 440, 503, 516
MboI	GATC	5 cut(s)	184, 195, 438, 501, 514
MboII	GAAGA	2 cut(s)	19, 248
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	7 cut(s)	27, 101, 140, 150, 154, 281, 548
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	349, 352, 367, 538, 559
MseI	TTAA	7 cut(s)	14, 74, 84, 125, 153, 174, 555
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	97, 106
NdeII	GATC	5 cut(s)	184, 195, 438, 501, 514
NlaIII	CATG	2 cut(s)	458, 565
NlaIV	GGNNCC	1 cut(s)	363
PctI	GAATGC	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshBI	ATTAAT	2 cut(s)	14, 153
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	363
SaqAI	TTAA	7 cut(s)	14, 74, 84, 125, 153, 174, 555
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	5 cut(s)	184, 195, 438, 501, 514
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	305
SfaNI	GCATC	2 cut(s)	296, 418
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	7 cut(s)	27, 101, 140, 150, 154, 281, 548
SsiI	CCGC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	4 cut(s)	180, 234, 426, 513
TasI	AATT	7 cut(s)	27, 101, 140, 150, 154, 281, 548
Tru1I	TTAA	7 cut(s)	14, 74, 84, 125, 153, 174, 555
Tru9I	TTAA	7 cut(s)	14, 74, 84, 125, 153, 174, 555
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	3 cut(s)	36, 412, 420
VspI	ATTAAT	2 cut(s)	14, 153
XapI	RAATTY	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.