Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016496

Physical Location & Seq

Genomic Coordinates Forward (+)

3020602 .. 3021168

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATGAAGCAATTGCCAGCAGCTCCATGGCACTTGTTGGAGTGGTTCTGTTTTTCTTAAGGATTATTAAGTGGCTCATTGTGCAATTCTTGCTACACTTGTCAAGTTTAAGGTATGCACTTCAATTCTTCGTAATTAATTGTGGTGTGAACAATGTTAACCTCGATGATCAGACCAAGATCACAACAGAGAAAGCTTGCACTTACAAAGTAGGTGTTGAAGAGAACACGAAAGACCTGGGTGACAAGAAACTGTGTTTAGGAGAATTATCATCGGTTATGGAGAACCTGGGAAGTTTATGTGGTGATAATGGGTCTAAGGAGTTGGCTGACTTGCTTGAGGAGGAACCCAGCTTGGAGGAAGTAAAAGAAGCCTTCCATTTGTTTGATGAAAATGCCGATGGGTTCATCGATGCAGGGGAGATCAAGAAGGTTCTCCATGTATTAGGTTTCGTCCAAGCTTCGGAGTCAGAATGCAAAAGAATGATCAAGACCTTCGATCACAATGGAGATGGACGTATAGACTTTGAGGAATTTGTTAAGCTTATGGAGGATAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_8

Protein Analysis

188

Amino Acids

21.04

Weight (kDa)

4.56

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	120 - 183	1.1e-15	EF-hand domain pair
EF-hand_6	PF13405	121 - 150	2.7e-06	EF-hand domain
EF-hand_8	PF13833	135 - 185	2e-08	EF-hand domain pair
EF-hand_1	PF00036	158 - 184	1.1e-08	EF hand domain
EF-hand_5	PF13202	163 - 183	6.8e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0016496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47480
fragaria_vesca	FvH4_5g14810
malus_domestica	MD06G1194700.v1.1 MD14G1201700.v1.1
prunus_persica	Prupe.5G194800_v2.0.a1
pyrus_communis	pycom14g16710
rosa_chinensis	RchiOBHm_Chr7g0181581
rosa_multiflora	Rmu_sc0000988.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271880
rosa_samantha	Rh7AG044600 Rh7BG043600 Rh7CG045400 Rh7DG044200
rosa_wichuraiana	Rw7G003700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	463
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	125, 221
AjnI	CCWGG	2 cut(s)	237, 288
AluBI	AGCT	6 cut(s)	24, 197, 354, 461, 544, 558
AluI	AGCT	6 cut(s)	24, 197, 354, 461, 544, 558
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	533
AseI	ATTAAT	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	254, 317
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	395, 506
BciT130I	CCWGG	2 cut(s)	239, 290
BclI	TGATCA	2 cut(s)	169, 486
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	239, 290
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	239, 290
BmsI	GCATC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	27, 238, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	239, 290
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	27, 238, 289
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	169, 180, 423, 486, 499
Bsp19I	CCATGG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	27, 238, 289
BssMI	GATC	5 cut(s)	169, 180, 423, 486, 499
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	239, 290
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	19, 199
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	172, 183, 426, 489, 502
BstMBI	GATC	5 cut(s)	169, 180, 423, 486, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 91
BstNI	CCWGG	2 cut(s)	239, 290
BstSCI	CCNGG	2 cut(s)	237, 288
BstV1I	GCAGC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	411
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	19, 199
ClaI	ATCGAT	1 cut(s)	411
CviAII	CATG	2 cut(s)	28, 440
CviJI	RGCY	9 cut(s)	24, 76, 197, 329, 354, 374, 461, 544, 558
CviKI_1	RGCY	9 cut(s)	24, 76, 197, 329, 354, 374, 461, 544, 558
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	5 cut(s)	171, 182, 425, 488, 501
DpnII	GATC	5 cut(s)	169, 180, 423, 486, 499
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	237, 288
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	31, 443
FaiI	YATR	7 cut(s)	29, 117, 281, 301, 441, 521, 548
FatI	CATG	2 cut(s)	27, 439
FbaI	TGATCA	2 cut(s)	169, 486
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	31, 443
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	3 cut(s)	195, 459, 542
HinfI	GANTC	1 cut(s)	467
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	254, 317
Hpy166II	GTNNAC	2 cut(s)	151, 160
Hpy188I	TCNGA	3 cut(s)	174, 466, 472
Hpy188III	TCNNGA	2 cut(s)	427, 490
Hpy8I	GTNNAC	2 cut(s)	151, 160
HpyAV	CCTTC	3 cut(s)	385, 424, 505
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	5 cut(s)	85, 119, 201, 416, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 91
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	31, 443
Ksp22I	TGATCA	2 cut(s)	169, 486
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	169, 180, 423, 486, 499
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	31, 224, 251, 275, 302, 364, 402
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	5 cut(s)	171, 182, 425, 488, 501
MboI	GATC	5 cut(s)	169, 180, 423, 486, 499
MboII	GAAGA	2 cut(s)	121, 233
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	7 cut(s)	12, 86, 125, 135, 139, 266, 533
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	173, 334, 337, 352, 523, 544
MseI	TTAA	6 cut(s)	59, 69, 110, 138, 159, 540
MspCI	CTTAAG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	239, 290
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	239, 290
MwoI	GCNNNNNNNGC	2 cut(s)	82, 91
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	5 cut(s)	169, 180, 423, 486, 499
NlaIII	CATG	2 cut(s)	31, 443
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	237, 288
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	237, 288
PspN4I	GGNNCC	1 cut(s)	348
SaqAI	TTAA	6 cut(s)	59, 69, 110, 138, 159, 540
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	5 cut(s)	169, 180, 423, 486, 499
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	239, 290
SfaNI	GCATC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	58, 338
SmoI	CTYRAG	2 cut(s)	58, 338
Sse9I	AATT	7 cut(s)	12, 86, 125, 135, 139, 266, 533
StyD4I	CCNGG	2 cut(s)	237, 288
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	165, 411, 498
TasI	AATT	7 cut(s)	12, 86, 125, 135, 139, 266, 533
Tru1I	TTAA	6 cut(s)	59, 69, 110, 138, 159, 540
Tru9I	TTAA	6 cut(s)	59, 69, 110, 138, 159, 540
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	21, 397, 405
Vha464I	CTTAAG	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.