MD07G1017600.v1.1

Coiled-coil region of Oberon

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
1514581 .. 1519732
5152 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1017600.v1.1.491

Sequence Viewer

Length: 3738 bp
ATGAAGAGGCTGAGATCCAGCGACGGTCTCGATTCCTTCGGGAAGGATCCGAATCCGAATCCTAACCCGAACCCCAGCTCCAACCCCAGCCGAACCTCCTCCAACTCGCACCGGAGCTTCTACTATAAGCCAGATACTGTGCGGAAGGGTTTGCTCTCTTCGTCCTCCTCGGCTTCTTCTCTGGCGCCGGCTCGCTCCTACGACGACCGGGAACAGGTCGGTTCTGGCGGAGGGTCCAGAACTGTCCGGAAGAGGCCGGGGCACGAGTTCGACGGTTTCGACCGGAGGAAGGGGACCGATCGATACAATAGAGATGGAGGAGGGTACGATCGTAATTTGATGCACCGGTCCGAGAGCTTCTCCGCGTCGAGGAGGTCGCCGACGGATTTTCCGAAAGGGTTTCGATCGGAGCGGGACAGGTCAAGGCGCGAAGGCAGCGGGAGCGGAGCGTTGTCGTGGCGGAGGTTTGGGAAGGAGTTCGAGGAGAGAGGAGGAGGGAAGGGGTTGAGGGACGTGAGGTCGCCGACGTGGTCGAATTCGAGGGATTCAGGGAGCGAGCAGTCTAGGGTTAGGTCCCCTGCGAGGAGGTTTAGGGATGGGAAGGAGTCGAAATCGGAGTCCAAGTCCAAGTCGCCCACTTGGTCTAAGGACTCGGTGGGGAGTGAGCAGTCGAAGAGTGTTGAGGTGAGGAAGAGGGAGGTGGAGGCGGAGGAGGTTCAGGGTGAGCAGCCAAAGAGTGTTGAGTTTAGGAAGACGGAGACGGAGGAGGTTCCGGTTGAGCAGCCAAAGAGTGTTGAGGTTAGGAAGAGGGAGACGGAGGAGGTTAAGGCTGAGAAGGGGAGTAGGACTAGTAGTGAAATGGAGGAGGGTGAGCTTGTGCCTGAAGCTGGAGCTGGTGTTGGAGGTGGAGGTGAAGGTGAAGGTGAACCCCAACTGGGTCCTGAAGGTGGAGCTGAAACAGAAGAAACACGGATTCGAAGCGAGACTTCAGATAGGGATACAGATAGGGTTGAGAAAGGTGAGTCTCTGGATAAACAAGAGGCTAGGGAGGAGAAAGGTGAGTCCTCGGATAAACAAGAGGTGAAAGATGTGAGTAAAGAGAGTGTGTGTGAAAGGAAGGATGAGGAGGAGAAGAAAGATGATGACTTGCCAAATGGTGATAACGAAATGATTGATAAAAGCGGGAATGTGGAAGCTCGTGAAGATGAGGATGATGGAAAAGGGAGTTTCAGGGAAGGTGATGAAGAAGTGGTCGCGGAGATTCCGATGGAATTGGAAGAGGAACCAAAGCAAGATAAGGGAATTGACCTTGAATTGAAGGCGGAGGATGATGACGATGAAATGACAGAGTCAGACAAGGTAGCAACAGAGGATGAGGAGGATAATGAATTGGTTAAGCTGGATACGGTGAATAGTATGAGTCAGAATTTTAAGGATAAAGGTAAAAGCGTCGCTGTGACACCGACCGATATGGTAGATTCAGCAGAAGATGGTCGGTGGACTGCCAGAGAATCCAGAGAGCTGTTAATTGGGTTGGAAAATGATATAGAAGGACTCAGCACTAGGGGTTTTGAGTTGTTTTCAAGCTCTCCTGTTAGGCGAAAGGAGAAAGCTGATCAATCTGGTTCCAGTGTGAAGGATGAAAAGCTGGCACTTGAGCCGCTTGATCTTTCTCTTAGCTTGCCAAATGTTTTGTTACCCATTGGTGGTGCAGCTCCTGGTTCTCCCGACCAAGCAATGAGTGTTCAGTCTCTAAGTAATACTTTTCGTACTAACTCTGATGGATTTACTCAATCAGTATCCTTTTCAGGCTCTCAGTCGTTTTATCACAACCCTAGCTGTTCGCTAACCACCCAGAATTCGGTGGACTTTGAACAGTCGGTTAAAAGTCGTCCGCTTTTCCAGGGAATCGATTGGCAGGCACTCGCTCAGACTGAGGCTAAGGGTAAAGAAGTTCCTTGGCAGGCACTTGTTCAGAATGATGCTAAGAGCAAAGAAATCCCTTTGTATCAAAGAATCTTGATGAATGGAAACGGGTTTCATCAACAACAGTCTCAAGCATCGCAAGGCATTCCAAATGGTCAATCGGTCCAAGGGCAACAACATCGTAGGCATCCTGAAGGAAGCTCTGAAGTGACGAATGGAATGGAAAGGCATCTGAGCTTCAATAAGCAGTTGTCAGGTGGACAGACAAGGAACCATGAGGATGTTAGATCACCTTCGAATAGCGTTGGATCTCATGAAATGGGATCAAACTATAGTTTTGACAGAAAACGACTAATGAGAGAGAAAAGTAGTGGTAGTTTATATAGGACTAGCAGTCAGAAGGAACACGAGAAATTTCTCATTGGTGGAGCTGACTTTGTGGAGACAATCGTTGCCAGGATAGTCTCCGATCCCATACATGTAATGGCTAGGAAGTTTCATGAGATGACAGGACAATCCACTTCATGTGTGAAGGAGACCATTCGCGATATGATGTTAAATATGGATAAGCGCATGCAACTGTTTGCATTTCAGAAGGCATTGCAGAGCAGGTCTGATATAACCATGGAGATGCTACTAAAAGCTCATCGTGCGCAACTGGAAATCTTGGTTGCTCTGAAGACTGGTCTACCGGATTATCTCCAGCAAGAGAATGGTGCATCTTCTGATTTGGCTGAAATTTTTCTTAACTCAAGATGCAGAAATCCTTCTTGTCGGAGTCTTGTGCCTGTGGATGAATGTGATTGCAAGGTTTGTTCGCAAAAGAGTGGTTTTTGCAGTGCGTGTATGTGTCTTGTGTGCTCAAAGTTTGACATGGCCTCGAATACATGTAGTTGGATTGGGTGTGATGTTTGTCTCCATTGGTGCCACGCGGATTGTGCATTGCGGGAATCTTATATTAGAAATGGACGCAGTGCTACTGGATCTCAAGGGATGACTGAGATGCAGTTTCATTGTGTTGCCTGCGATCATCCTTCTGAGATGTTTGGCTTTGTGAAAGAGGTTTTTCAGAATTTTGCAAAGGATTGGACAATTGAAAATCTTGCTAGGGAACTTGAATACGTTAAGAGAATATTTGTTGTCAGTAAGGGCATGAGAGGGAGACGACTTTATGAAATTGCCGATCAATCACTGGCAAGATTGGTAAACAAGTCTGACCTTCCGGAGGTGTACAATTATGTCATGGCTTTTCTTTTGGATGCTGACAGTTCCAAGCTAGGCAAAACAGCCACTTTATCTGGGAAGGATCAAAGTAAAGTGAACAATGGGATTGCTGGGCCAAGCCAGGAACCCACATGGCTGAAATCAATATACACAGAAAAGGTCCCTCAGTTGGAGACTGCAGCTAACACTCATCCTAGCTTTAACTACGATCAGCATGAGAAACGCAACACAGAGTTGAACACAAGTGCCCAAAAAGAACCTCTTTTCGAAGAGCTGGAGAGCATTGTGAGGATCAAGCAGGCTGAGGCAAAATTGTTTCAAACACGAGCAGATGATGCAAGAAGAGAAGCTGAGGGGCTGAAACGCATAGCAATGGCAAAGAATGAAAAAATTGAAGAAGAATTTAGGAGCAGGATAGCAAAGTTGCGCTTAGTAGAGGCAGAAGAAATGCACAGCAAGAAACTTGAAGAAGTACAAGCTCTAGACCGAGCGCATCGTGAATACTCCAATATGAAGATGAGAATGCAAGCTGATATAAAGGATCTTTTGTTAAAAATGGAAGCGACGAAGCGGAACCTTTCTTTGTGA

Protein Analysis

1246

Amino Acids

139.5

Weight (kDa)

5.48

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_Oberon PF07227 895 - 1018 1.3e-38 PHD - plant homeodomain finger protein
Oberon_cc PF16312 1119 - 1233 1.4e-39 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2580
Acc36I ACCTGC 1 cut(s) 2526
AccB1I GGYRCC 2 cut(s) 184, 2850
AccBSI CCGCTC 2 cut(s) 412, 444
AccI GTMKAC 1 cut(s) 2614
AccII CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
AccIII TCCGGA 2 cut(s) 246, 3148
AcsI RAATTY 7 cut(s) 535, 1426, 1858, 2339, 2664, 2998, 3551
AcuI CTGAAG 6 cut(s) 903, 963, 972, 2139, 2151, 2624
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 4 cut(s) 326, 1771, 3158, 3624
AflIII ACRYGT 2 cut(s) 2404, 2813
AgeI ACCGGT 1 cut(s) 345
AhdI GACNNNNNGTC 2 cut(s) 517, 2319
AhlI ACTAGT 1 cut(s) 848
AjiI CACGTC 2 cut(s) 514, 528
AjnI CCWGG 4 cut(s) 1717, 1902, 2381, 3270
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
Alw21I GWGCWC 1 cut(s) 2789
AlwNI CAGNNNCTG 2 cut(s) 137, 1718
Aor13HI TCCGGA 2 cut(s) 246, 3148
AoxI GGCC 3 cut(s) 254, 2802, 3263
ApeKI GCWGC 5 cut(s) 435, 727, 781, 1712, 3329
ApoI RAATTY 7 cut(s) 535, 1426, 1858, 2339, 2664, 2998, 3551
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AsiGI ACCGGT 1 cut(s) 345
Asp700I GAANNNNTTC 3 cut(s) 476, 2667, 2692
AspLEI GCGC 6 cut(s) 187, 429, 2499, 2581, 3579, 3643
AspS9I GGNCC 8 cut(s) 234, 294, 348, 573, 938, 2089, 3263, 3310
AsuC2I CCSGG 2 cut(s) 209, 258
AsuII TTCGAA 3 cut(s) 976, 2222, 3417
AvaII GGWCC 7 cut(s) 234, 294, 348, 573, 938, 2089, 3310
BaeGI GKGCMC 2 cut(s) 264, 3400
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BamHI GGATCC 1 cut(s) 46
BanI GGYRCC 2 cut(s) 184, 2850
BauI CACGAG 4 cut(s) 263, 1197, 2333, 3474
BbsI GAAGAC 2 cut(s) 758, 2612
Bbv12I GWGCWC 1 cut(s) 2789
BbvCI CCTCAGC 2 cut(s) 3453, 3501
BbvI GCAGC 5 cut(s) 447, 739, 793, 1724, 3341
BccI CCATC 6 cut(s) 308, 590, 1208, 1261, 1484, 1775
BcgI CGANNNNNNTGC 2 cut(s) 2087, 2121
BciT130I CCWGG 4 cut(s) 1719, 1904, 2383, 3272
BciVI GTATCC 3 cut(s) 991, 1396, 1810
BclI TGATCA 1 cut(s) 1615
BcnI CCSGG 2 cut(s) 209, 258
BcuI ACTAGT 1 cut(s) 848
BfmI CTRYAG 2 cut(s) 2257, 3327
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 2526
BfuI GTATCC 3 cut(s) 991, 1396, 1810
BisI GCNGC 6 cut(s) 436, 728, 782, 1661, 1713, 3330
BlsI GCNGC 6 cut(s) 437, 729, 783, 1662, 1714, 3331
Bme1390I CCNGG 6 cut(s) 209, 258, 1719, 1904, 2383, 3272
Bme18I GGWCC 7 cut(s) 234, 294, 348, 573, 938, 2089, 3310
BmeRI GACNNNNNGTC 2 cut(s) 517, 2319
BmgBI CACGTC 2 cut(s) 514, 528
BmgT120I GGNCC 8 cut(s) 234, 294, 348, 573, 938, 2089, 3263, 3310
BmrFI CCNGG 6 cut(s) 209, 258, 1719, 1904, 2383, 3272
BmrI ACTGGG 1 cut(s) 944
BmuI ACTGGG 1 cut(s) 944
BpiI GAAGAC 2 cut(s) 758, 2612
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 3 cut(s) 909, 2612, 3446
Bpu10I CCTNAGC 3 cut(s) 1941, 3453, 3501
Bpu14I TTCGAA 3 cut(s) 976, 2222, 3417
BpuEI CTTGAG 4 cut(s) 1676, 2040, 2662, 2898
BpuMI CCSGG 2 cut(s) 209, 258
Bsa29I ATCGAT 2 cut(s) 301, 1911
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 2 cut(s) 32, 2456
BsaJI CCNNGG 7 cut(s) 168, 257, 1065, 1903, 1958, 2092, 2550
BsaWI WCCGGW 7 cut(s) 111, 246, 282, 345, 772, 2617, 3148
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 608, 638, 882, 912
Bse118I RCCGGY 2 cut(s) 187, 345
Bse1I ACTGG 6 cut(s) 939, 1629, 2589, 2614, 2911, 3123
Bse3DI GCAATG 4 cut(s) 1743, 2525, 2867, 3528
Bse8I GATNNNNATC 1 cut(s) 51
BseAI TCCGGA 2 cut(s) 246, 3148
BseBI CCWGG 4 cut(s) 1719, 1904, 2383, 3272
BseCI ATCGAT 2 cut(s) 301, 1911
BseDI CCNNGG 7 cut(s) 168, 257, 1065, 1903, 1958, 2092, 2550
BseJI GATNNNNATC 1 cut(s) 51
BseMI GCAATG 4 cut(s) 1743, 2525, 2867, 3528
BseNI ACTGG 6 cut(s) 939, 1629, 2589, 2614, 2911, 3123
BseSI GKGCMC 2 cut(s) 264, 3400
BseXI GCAGC 5 cut(s) 447, 739, 793, 1724, 3341
BseYI CCCAGC 3 cut(s) 74, 86, 3260
BsgI GTGCAG 1 cut(s) 1731
Bsh1236I CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
Bsh1285I CGRYCG 6 cut(s) 208, 283, 301, 331, 407, 1467
BshFI GGCC 3 cut(s) 256, 2804, 3265
BshNI GGYRCC 2 cut(s) 184, 2850
BshTI ACCGGT 1 cut(s) 345
BshVI ATCGAT 2 cut(s) 301, 1911
BsiEI CGRYCG 6 cut(s) 208, 283, 301, 331, 407, 1467
BsiHKAI GWGCWC 1 cut(s) 2789
BslFI GGGAC 5 cut(s) 307, 428, 524, 559, 3296
BsmBI CGTCTC 3 cut(s) 752, 806, 3082
BsmFI GGGAC 5 cut(s) 307, 428, 524, 559, 3296
BsmI GAATGC 2 cut(s) 2070, 3678
BsnI GGCC 3 cut(s) 256, 2804, 3265
Bso31I GGTCTC 2 cut(s) 32, 2456
Bsp119I TTCGAA 3 cut(s) 976, 2222, 3417
Bsp1286I GDGCHC 3 cut(s) 264, 2789, 3400
Bsp13I TCCGGA 2 cut(s) 246, 3148
Bsp1407I TGTACA 1 cut(s) 3156
Bsp19I CCATGG 1 cut(s) 2550
Bsp68I TCGCGA 1 cut(s) 2472
BspANI GGCC 3 cut(s) 256, 2804, 3265
BspDI ATCGAT 2 cut(s) 301, 1911
BspEI TCCGGA 2 cut(s) 246, 3148
BspFNI CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
BspHI TCATGA 2 cut(s) 2239, 2425
BspMAI CTGCAG 1 cut(s) 3331
BspMI ACCTGC 1 cut(s) 2526
BspQI GCTCTTC 1 cut(s) 3414
BspT104I TTCGAA 3 cut(s) 976, 2222, 3417
BspT107I GGYRCC 2 cut(s) 184, 2850
BspTNI GGTCTC 2 cut(s) 32, 2456
BsrBI CCGCTC 2 cut(s) 412, 444
BsrDI GCAATG 4 cut(s) 1743, 2525, 2867, 3528
BsrFI RCCGGY 2 cut(s) 187, 345
BsrGI TGTACA 1 cut(s) 3156
BsrI ACTGG 6 cut(s) 939, 1629, 2589, 2614, 2911, 3123
BssAI RCCGGY 2 cut(s) 187, 345
BssECI CCNNGG 7 cut(s) 168, 257, 1065, 1903, 1958, 2092, 2550
BssNI GRCGYC 1 cut(s) 185
BssSI CACGAG 4 cut(s) 263, 1197, 2333, 3474
BssT1I CCWWGG 3 cut(s) 1958, 2092, 2550
Bst2BI CACGAG 4 cut(s) 263, 1197, 2333, 3474
Bst2UI CCWGG 4 cut(s) 1719, 1904, 2383, 3272
Bst4CI ACNGT 9 cut(s) 26, 139, 244, 275, 1408, 1878, 2052, 2508, 3194
Bst6I CTCTTC 8 cut(s) 163, 245, 668, 686, 800, 1272, 3414, 3487
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 3485
BstAUI TGTACA 1 cut(s) 3156
BstBI TTCGAA 3 cut(s) 976, 2222, 3417
BstDSI CCRYGG 1 cut(s) 2550
BstENI CCTNNNNNAGG 1 cut(s) 3149
BstFNI CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 6 cut(s) 187, 429, 2499, 2581, 3579, 3643
BstMCI CGRYCG 6 cut(s) 208, 283, 301, 331, 407, 1467
BstMWI GCNNNNNNNGC 5 cut(s) 435, 441, 2576, 2864, 3485
BstNI CCWGG 4 cut(s) 1719, 1904, 2383, 3272
BstNSI RCATGY 3 cut(s) 2408, 2503, 2817
BstSCI CCNGG 6 cut(s) 207, 256, 1717, 1902, 2381, 3270
BstSFI CTRYAG 2 cut(s) 2257, 3327
BstSLI GKGCMC 2 cut(s) 264, 3400
BstUI CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
BstV1I GCAGC 5 cut(s) 447, 739, 793, 1724, 3341
BstV2I GAAGAC 2 cut(s) 758, 2612
BstX2I RGATCY 5 cut(s) 14, 46, 2234, 2909, 3691
BstYI RGATCY 5 cut(s) 14, 46, 2234, 2909, 3691
Bsu15I ATCGAT 2 cut(s) 301, 1911
BsuI GTATCC 3 cut(s) 991, 1396, 1810
BsuRI GGCC 3 cut(s) 256, 2804, 3265
BsuTUI ATCGAT 2 cut(s) 301, 1911
BtgI CCRYGG 1 cut(s) 2550
BtgZI GCGATG 1 cut(s) 2046
BtrI CACGTC 2 cut(s) 514, 528
BtsI GCAGTG 2 cut(s) 2770, 2905
BtsIMutI CAGTG 4 cut(s) 1636, 2770, 2905, 3116
BtuMI TCGCGA 1 cut(s) 2472
BveI ACCTGC 1 cut(s) 2526
CaiI CAGNNNCTG 2 cut(s) 137, 1718
CciI TCATGA 2 cut(s) 2239, 2425
CfoI GCGC 6 cut(s) 187, 429, 2499, 2581, 3579, 3643
Cfr10I RCCGGY 2 cut(s) 187, 345
Cfr13I GGNCC 8 cut(s) 234, 294, 348, 573, 938, 2089, 3263, 3310
ClaI ATCGAT 2 cut(s) 301, 1911
CpoI CGGWCCG 1 cut(s) 348
CseI GACGC 3 cut(s) 354, 1438, 2904
Csp6I GTAC 4 cut(s) 325, 1770, 3157, 3623
CspAI ACCGGT 1 cut(s) 345
CspCI CAANNNNNGTGG 2 cut(s) 2843, 2878
CspI CGGWCCG 1 cut(s) 348
CviQI GTAC 4 cut(s) 325, 1770, 3157, 3623
DinI GGCGCC 1 cut(s) 186
DriI GACNNNNNGTC 2 cut(s) 517, 2319
Eam1104I CTCTTC 8 cut(s) 163, 245, 668, 686, 800, 1272, 3414, 3487
Eam1105I GACNNNNNGTC 2 cut(s) 517, 2319
EarI CTCTTC 8 cut(s) 163, 245, 668, 686, 800, 1272, 3414, 3487
EciI GGCGGA 4 cut(s) 243, 475, 722, 1337
Eco130I CCWWGG 3 cut(s) 1958, 2092, 2550
Eco31I GGTCTC 2 cut(s) 32, 2456
Eco47I GGWCC 7 cut(s) 234, 294, 348, 573, 938, 2089, 3310
Eco57I CTGAAG 6 cut(s) 903, 963, 972, 2139, 2151, 2624
EcoNI CCTNNNNNAGG 1 cut(s) 3149
EcoO109I RGGNCCY 3 cut(s) 573, 938, 3310
EcoRI GAATTC 2 cut(s) 535, 1858
EcoRII CCWGG 4 cut(s) 1717, 1902, 2381, 3270
EcoT14I CCWWGG 3 cut(s) 1958, 2092, 2550
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 3 cut(s) 1958, 2092, 2550
Esp3I CGTCTC 3 cut(s) 752, 806, 3082
FalI AAGNNNNNCTT 8 cut(s) 970, 1002, 1747, 1779, 3396, 3428, 3563, 3595
FaqI GGGAC 5 cut(s) 307, 428, 524, 559, 3296
FauI CCCGC 4 cut(s) 405, 431, 1175, 2865
FbaI TGATCA 1 cut(s) 1615
FblI GTMKAC 1 cut(s) 2614
Fnu4HI GCNGC 6 cut(s) 436, 728, 782, 1661, 1713, 3330
Fsp4HI GCNGC 6 cut(s) 436, 728, 782, 1661, 1713, 3330
FspI TGCGCA 1 cut(s) 2580
GlaI GCGC 6 cut(s) 186, 428, 2498, 2580, 3578, 3642
GluI GCNGC 6 cut(s) 436, 728, 782, 1661, 1713, 3330
GsaI CCCAGC 3 cut(s) 78, 90, 3264
GsuI CTGGAG 3 cut(s) 909, 2612, 3446
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 3 cut(s) 256, 2804, 3265
HgaI GACGC 3 cut(s) 354, 1438, 2904
HhaI GCGC 6 cut(s) 187, 429, 2499, 2581, 3579, 3643
Hin1I GRCGYC 1 cut(s) 185
Hin6I GCGC 6 cut(s) 185, 427, 2497, 2579, 3577, 3641
HinP1I GCGC 6 cut(s) 185, 427, 2497, 2579, 3577, 3641
Hpy166II GTNNAC 8 cut(s) 926, 1500, 1867, 2186, 2615, 3133, 3157, 3247
Hpy8I GTNNAC 8 cut(s) 926, 1500, 1867, 2186, 2615, 3133, 3157, 3247
Hpy99I CGWCG 8 cut(s) 26, 206, 275, 370, 385, 529, 1454, 3718
HpyCH4III ACNGT 9 cut(s) 26, 139, 244, 275, 1408, 1878, 2052, 2508, 3194
HpyCH4IV ACGT 3 cut(s) 513, 527, 3048
HpyF10VI GCNNNNNNNGC 5 cut(s) 435, 441, 2576, 2864, 3485
HpySE526I ACGT 3 cut(s) 513, 527, 3048
Hsp92I GRCGYC 1 cut(s) 185
HspAI GCGC 6 cut(s) 185, 427, 2497, 2579, 3577, 3641
KasI GGCGCC 1 cut(s) 184
Kpn2I TCCGGA 2 cut(s) 246, 3148
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 1615
LguI GCTCTTC 1 cut(s) 3414
Lsp1109I GCAGC 5 cut(s) 447, 739, 793, 1724, 3341
MaeII ACGT 3 cut(s) 513, 527, 3048
MaeIII GTNAC 3 cut(s) 1456, 1695, 2134
MbiI CCGCTC 2 cut(s) 412, 444
MfeI CAATTG 1 cut(s) 3018
MflI RGATCY 5 cut(s) 14, 46, 2234, 2909, 3691
MhlI GDGCHC 3 cut(s) 264, 2789, 3400
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 9 cut(s) 614, 626, 644, 1031, 1070, 1358, 1429, 1548, 2713
MmeI TCCRAC 8 cut(s) 105, 126, 880, 1515, 2212, 2681, 2801, 3300
MroI TCCGGA 2 cut(s) 246, 3148
MroNI GCCGGC 1 cut(s) 187
MroXI GAANNNNTTC 3 cut(s) 476, 2667, 2692
MslI CAYNNNNRTG 3 cut(s) 2205, 2555, 3521
MspA1I CMGCKG 1 cut(s) 438
MspR9I CCNGG 6 cut(s) 209, 258, 1719, 1904, 2383, 3272
MunI CAATTG 1 cut(s) 3018
Mva1269I GAATGC 2 cut(s) 2070, 3678
MvaI CCWGG 4 cut(s) 1719, 1904, 2383, 3272
MvnI CGCG 5 cut(s) 365, 429, 1256, 2472, 2858
MwoI GCNNNNNNNGC 5 cut(s) 435, 441, 2576, 2864, 3485
NaeI GCCGGC 1 cut(s) 189
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 2 cut(s) 209, 258
NcoI CCATGG 1 cut(s) 2550
NgoMIV GCCGGC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 1456, 2134
NruI TCGCGA 1 cut(s) 2472
NsbI TGCGCA 1 cut(s) 2580
NspI RCATGY 3 cut(s) 2408, 2503, 2817
NspV TTCGAA 3 cut(s) 976, 2222, 3417
PaeI GCATGC 1 cut(s) 2503
PagI TCATGA 2 cut(s) 2239, 2425
PciI ACATGT 2 cut(s) 2404, 2813
PciSI GCTCTTC 1 cut(s) 3414
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 389
PctI GAATGC 2 cut(s) 2070, 3678
PdiI GCCGGC 1 cut(s) 189
PdmI GAANNNNTTC 3 cut(s) 476, 2667, 2692
PflFI GACNNNGTC 2 cut(s) 529, 1348
PinAI ACCGGT 1 cut(s) 345
PkrI GCNGC 6 cut(s) 437, 729, 783, 1662, 1714, 3331
Ple19I CGATCG 3 cut(s) 301, 331, 407
PleI GAGTC 9 cut(s) 613, 625, 644, 1030, 1069, 1357, 1428, 1548, 2712
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 9 cut(s) 613, 625, 644, 1030, 1069, 1357, 1428, 1548, 2712
PpuMI RGGWCCY 3 cut(s) 573, 938, 3310
PscI ACATGT 2 cut(s) 2404, 2813
Psp5II RGGWCCY 3 cut(s) 573, 938, 3310
Psp6I CCWGG 4 cut(s) 1717, 1902, 2381, 3270
PspFI CCCAGC 3 cut(s) 74, 86, 3260
PspGI CCWGG 4 cut(s) 1717, 1902, 2381, 3270
PspPI GGNCC 8 cut(s) 234, 294, 348, 573, 938, 2089, 3263, 3310
PspPPI RGGWCCY 3 cut(s) 573, 938, 3310
PstI CTGCAG 1 cut(s) 3331
PstNI CAGNNNCTG 2 cut(s) 137, 1718
PsuI RGATCY 5 cut(s) 14, 46, 2234, 2909, 3691
PsyI GACNNNGTC 2 cut(s) 529, 1348
PvuI CGATCG 3 cut(s) 301, 331, 407
RruI TCGCGA 1 cut(s) 2472
RsaI GTAC 4 cut(s) 326, 1771, 3158, 3624
RsaNI GTAC 4 cut(s) 325, 1770, 3157, 3623
RseI CAYNNNNRTG 3 cut(s) 2205, 2555, 3521
Rsr2I CGGWCCG 1 cut(s) 348
RsrII CGGWCCG 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 3414
SatI GCNGC 6 cut(s) 436, 728, 782, 1661, 1713, 3330
Sau96I GGNCC 8 cut(s) 234, 294, 348, 573, 938, 2089, 3263, 3310
SchI GAGTC 9 cut(s) 614, 626, 644, 1031, 1070, 1358, 1429, 1548, 2713
ScrFI CCNGG 6 cut(s) 209, 258, 1719, 1904, 2383, 3272
SduI GDGCHC 3 cut(s) 264, 2789, 3400
SfcI CTRYAG 2 cut(s) 2257, 3327
SfoI GGCGCC 1 cut(s) 186
SfuI TTCGAA 3 cut(s) 976, 2222, 3417
SinI GGWCC 7 cut(s) 234, 294, 348, 573, 938, 2089, 3310
SmiMI CAYNNNNRTG 3 cut(s) 2205, 2555, 3521
SmlI CTYRAG 4 cut(s) 1655, 2055, 2677, 2913
SmoI CTYRAG 4 cut(s) 1655, 2055, 2677, 2913
SpeI ACTAGT 1 cut(s) 848
SphI GCATGC 1 cut(s) 2503
SspDI GGCGCC 1 cut(s) 184
SspI AATATT 1 cut(s) 3060
StyD4I CCNGG 6 cut(s) 207, 256, 1717, 1902, 2381, 3270
StyI CCWWGG 3 cut(s) 1958, 2092, 2550
TaaI ACNGT 9 cut(s) 26, 139, 244, 275, 1408, 1878, 2052, 2508, 3194
TaiI ACGT 3 cut(s) 516, 530, 3051
TaqII GACCGA 4 cut(s) 311, 1481, 2077, 3651
TatI WGTACW 2 cut(s) 3156, 3622
TauI GCSGC 1 cut(s) 1663
TscAI CASTG 4 cut(s) 1636, 2770, 2905, 3123
TseFI GTSAC 2 cut(s) 1456, 2134
TseI GCWGC 5 cut(s) 435, 727, 781, 1712, 3329
Tsp45I GTSAC 2 cut(s) 1456, 2134
TspGWI ACGGA 5 cut(s) 398, 770, 776, 830, 985
TspRI CASTG 4 cut(s) 1636, 2770, 2905, 3123
Tth111I GACNNNGTC 2 cut(s) 529, 1348
VpaK11BI GGWCC 7 cut(s) 234, 294, 348, 573, 938, 2089, 3310
XagI CCTNNNNNAGG 1 cut(s) 3149
XapI RAATTY 7 cut(s) 535, 1426, 1858, 2339, 2664, 2998, 3551
XbaI TCTAGA 1 cut(s) 3631
XceI RCATGY 3 cut(s) 2408, 2503, 2817
XcmI CCANNNNNNNNNTGG 2 cut(s) 2407, 2636
XmiI GTMKAC 1 cut(s) 2614
XmnI GAANNNNTTC 3 cut(s) 476, 2667, 2692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.