Rw1G001730

Coiled-coil region of Oberon

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
2991351 .. 2995972
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001730.1

Sequence Viewer

Length: 3666 bp
ATGAAGAGGCTGAGATCCAGCGAGGATCTCGATTCTTACGGTAAGGATCCGAGCCCAAACCCGAACCCGAACCCGAACCCGAGCCGGACCTCCTCCTCCTCTTCCCACCGAAGCTTCTACTACAACAAACCAGACACCGCCCGCAAGGGCTTGCTCTCTTCCTCCTCCTCCGCCTCTTCTCTGGCGGCGGCGGCGAGGTCGTACGACCGGGACCGGGGAGACGACGATCGCGAGTTGGCGGCCGGCGGCGGAGGGACGAGGATGGTGAGGAAGAGGCCGGCGGACGTCGACGGGGGGTTTGATCGGAGGAAGGGGGTGGATCGGTATAGCAGAGACGGCGGCGGCGTAGGGTACGATCGTAATTTGATGCACCGGTCGGAGAGGAGCAGGGGGTCGGAGTTTCCGAAAGGGTTCCGATCGGAGAGGGACCGGTCGCGGCGGGAAGGGAGCAGCGCGCTGTCGTGGCGGCGGTTCGGGAAGGAGTTTGAGGAAGGAGGGAGGAGTAGTGGTAGTAGTAGGTTGGAGGAGAGAGGGAAGGGTGGAGGGTTTAGCATCCGGTCGCCGTCGTGGTCGAACTCGAGGGATTCCGGCAGCGAGCAGTCGAGGGTTAGGTCTCCGCCGAGGAGATTTAAAGACGGGAAATCGTCGAAATCGAAATCAAAGTCTAAGTCGCCGACTTGGTCCAAAGATTCTGTTGGGAGTGAGCAATCCAAGAGTGTTGAGGTGAAGAAGAGTGAGCCTGAGACCGAGACAGAGCCGGAGCCGGAGCCCGAACCTGAAAGGGAGCCAGAGCCCGAACCTGAGAGGGAGCCCGAACCTCAGCCTGAACCTGAACCTGAGCCCGAGCCGGAACCTATGCCAGAGCCTGAGGCCGAGGCTGTGGTGGAGGAGGTTCAGGGTGAGAGTGGAAGTAGGACTAGTAGTGAAATGGAGGAAGGAGAGCTTGAGCCCGAAGCGGAACCGGAAGGTGGGGATGGAGGTGAAGAGCCAGAGGTGGTGCCTGAAGGTGGAGCTGAAATGGAAGAAGGCCGAGTTCAGATTGGGAGCGAAAGGGAGACTACGGTTATGGAGGAGAGAGATGGGTGCTTAGATAGAGAAGAGGTGAAAGAGGGAGCGTGTGAGGGGAAAGAAGAGGAAAAGAAAGAAGATGAGTTGCCTTCGGTTGATGAGACCAGAAATGTAGGGGGGCAGGAAGATGGGTACGGTGGAAAAGAATTTGCGAGGGAAGAAGGGAATGAGTGCGAGGAGGAAGTGAGCAAGGAAGTGGTTTCGGAGAGGTCGTTGGAAGTGTGCGAGGAGCCAAAGCAAGACAAGGGGATAGACCTTGAAGTGAAGGCTGAGGATGACGAAATGACAGAGTCTGATAGGGAAGTGACAGAGGACACTGGAGTTCATACACTGAATCTGAGTGCGGATTTGACTCGGAATTTCAAGGACAAAGGGAAAAGCGTGGCCCATGTGGAGGATTCAGCAGAAAATAGTGGATGGGCTGTGAGAGAATCCAGAGAACTACTAACTTGCATGGACAATGATATGGAAGGACCGAGCACTAGGGGTTTCGAGTTGTTTTCATCCTCTCCTGTTAGGAGGCAGGAGAAAGCTGATTCTGGCGTTAATATGAAAGATGAGAAGTTGGTACTTGAGCCGCTTGACCTTTCACTAAGCTTGCCTAATGTTTTGTTACCTATTGGTGCCACTCCTGGTTCTCCTGATCAAGCGATGAGTGTTCAGTCTTTAACTAACACTTTCTGTACCAACTCGGATGGATTTACTCAATCAGTATCTTTTTCAGGTTCTCAGTCATTTTATCACAATCCTAGCTGTTCACTAACGACCCAGAATTCAATGGACTTTGAGCAATCAGTTAAAAGTCGTCCCCTTTTCCAGGGAATTGATTGGCAGGCGCTAGCTCAGAATGAGGCTAAGAATAAGGAGGTTCCATTTTATCAAAAAACCTTGATGACTGGCAATGGTTCTCATCCACAGTCCGGCGGTACAAATGGTCAATCTGTGCAAGGGCAACAAGTTAAACATTCGGAAGGAAGCTCTAAAGTGGCAAATGGATTTGAAAGGCAGCTAAGCTTCCATAAGCAGTTGTCAGGAGGGCACCCAAAGCACCATGAGGATGTTAGGTCACCTTCGCATAGTGTTGGATCTCAAGAAATGGGATCAAATTATAGTTTTGACAGGAAACGACTAATGAGAGAGAGAAGTAGTGGTAGTTTATATAGGACTAGCAGCCAGAAGGAAAAAGAGCAGTTGCTCATCGGTGGGGCTGATTTTGTTGAGACAATCATTGCCAGGATAGTATCTGATCCAGTCCATGTAATGGCCAAGAAGTTTCATGAAATGACAGGACAACATGCAGCATGTGTGAAGGAGAGCATTCGTGAGATTATGTTAAATGTGGATAAGCGCATGCAACTATTTGCATTTCAGAAGGCACTGCAGAACAGGTCTGACATAACCTTGGAGATGCTACTAAAAGCCCATCGGGCACAATTGGAAATATTGGTTGCTCTCAAGACTGGTCTACCAGATTTTCTTCAGCAAGAGTGCAGTGTGTCATCTTCTGATTTGGCTGAGATTTTTCTGTACTTGAGATGCAGAAATCCTTCTTGTCGGAGTCCTGTGCCTGCTGATGAATGTGATTGCAAGGTCTGTTCGCAAAAGAACGGATTTTGCAGCGCTTGTATGTGTCTTGTGTGCTCAAAGTTTGATATGGCCTCAAATACATGTAGTTGGATTGGGTGTGATGTTTGTCTTCATTGGTGCCATGCTGATTGTGCATTGCGGGAATCTTATATTAGAAATGGACGCAGTGCAACTGGATCTCAAGGGACGACTGAGATGCAATTTCATTGTGTTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTGAAGGAGGTTTTTCAGCATTTTGCCAAGGATTGGACGATTGAAAATCTTGCCAGGGAACTTGAATATGTTAAGAGAATTTTCCTTGTCAGCAAGGACATGAGAGGGAGACGGCTGTATGAAATTGCTGATCAATCGGTGGTTAGATTGGCAAATAAGTCTTGCCTTCCGGAGGTTTTCAGTTACATAATGGATTTTCTTGAGGATACTGACAGTTCCAAGTTGGGCAAAACTCCCATTTTACCTGGGAAGGATCTAGGTAAAGGAAGCAGTGGTATTGCTGGGCCAAGCCAGGAACCAGCATGGCTAAAGTCTGTATATACAGAAAAGGCCCCTCAGTTGGAATCTGCTCCTAGCGTTCTTCCTAGCTACAACTATGAGCAGCACGATAAACGCATTATGGAGTCAGAGTTGCACATGAGTTCTCAAAAAGAACCTGTTTTCGATGAGTTGGAGAGTATTGTGAGGATCAAGCGGGCCGAGGCTAAAATGTTCCAAACACGTGCGGACGAAGCAAGAAAAGAAGCTGAGGGGCTGAAACGCATATCACTGGCAAAGAATGAGAAAATTGAAGAAGAATATAGGAATAGAATAACAAAACTCCGTTTTGTTGAAGCTGAGGAAATGCGGAAACAGAAACTTGAGGAACTGCAGTCTCTAGATCGAGCTCATCGAGAATATTCCAATATGAAGATGAGGATGGAAGCGGATATTAAAGATCTTTTATTAAAAATGGAAGCAACAAAGCGAAACCTTTCCTTGTGA

Protein Analysis

1221

Amino Acids

136.56

Weight (kDa)

5.21

Isoelectric Point (pI)

66.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypan_PARP PF05887 241 - 293 1.4e-06 Procyclic acidic repetitive protein (PARP)
PHD_Oberon PF07227 869 - 992 5.6e-39 PHD - plant homeodomain finger protein
Oberon_cc PF16312 1084 - 1209 1.4e-42 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccB1I GGYRCC 4 cut(s) 997, 1691, 2106, 2772
AccB7I CCANNNNNTGG 2 cut(s) 2329, 2934
AccI GTMKAC 2 cut(s) 288, 2533
AccII CGCG 3 cut(s) 231, 436, 455
AccIII TCCGGA 1 cut(s) 3070
AcoI YGGCCR 2 cut(s) 240, 2331
AcsI RAATTY 4 cut(s) 1214, 1426, 1840, 2979
AcuI CTGAAG 2 cut(s) 1023, 2531
AcvI CACGTG 1 cut(s) 3404
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 7 cut(s) 203, 353, 1202, 1638, 1753, 1996, 2597
AfeI AGCGCT 1 cut(s) 2689
AflIII ACRYGT 2 cut(s) 2735, 3401
AgeI ACCGGT 2 cut(s) 372, 429
AgsI TTSAA 8 cut(s) 1328, 1432, 1845, 2069, 2945, 2966, 3473, 3515
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 6 cut(s) 1699, 1884, 2300, 2954, 3145, 3192
Alw21I GWGCWC 3 cut(s) 1550, 2711, 3571
AlwNI CAGNNNCTG 2 cut(s) 866, 1361
Ama87I CYCGRG 3 cut(s) 79, 577, 842
Aor13HI TCCGGA 1 cut(s) 3070
Aor51HI AGCGCT 1 cut(s) 2689
ApeKI GCWGC 7 cut(s) 450, 591, 2074, 2238, 2366, 2685, 3283
ApoI RAATTY 4 cut(s) 1214, 1426, 1840, 2979
ArsI GACNNNNNNTTYG 6 cut(s) 281, 313, 647, 653, 679, 685
AsiGI ACCGGT 2 cut(s) 372, 429
Asp700I GAANNNNTTC 3 cut(s) 410, 2614, 3655
AspLEI GCGC 5 cut(s) 455, 457, 1906, 2418, 2690
AspS9I GGNCC 9 cut(s) 87, 211, 427, 681, 1453, 1541, 3185, 3232, 3378
AsuC2I CCSGG 2 cut(s) 209, 215
AsuHPI GGTGA 6 cut(s) 277, 736, 911, 992, 1114, 2127
AsuNHI GCTAGC 1 cut(s) 1906
AvaI CYCGRG 3 cut(s) 79, 577, 842
AvaII GGWCC 5 cut(s) 87, 211, 427, 681, 1541
AxyI CCTNAGG 1 cut(s) 867
BaeGI GKGCMC 2 cut(s) 2109, 2500
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BalI TGGCCA 1 cut(s) 2333
BamHI GGATCC 1 cut(s) 46
BanI GGYRCC 4 cut(s) 997, 1691, 2106, 2772
BanII GRGCYC 7 cut(s) 56, 771, 795, 813, 843, 951, 3571
BbrPI CACGTG 1 cut(s) 3404
BbsI GAAGAC 1 cut(s) 2756
Bbv12I GWGCWC 3 cut(s) 1550, 2711, 3571
BbvCI CCTCAGC 4 cut(s) 819, 1338, 3429, 3519
BbvI GCAGC 7 cut(s) 462, 603, 2086, 2250, 2378, 2697, 3295
BccI CCATC 8 cut(s) 256, 968, 1073, 1190, 1479, 1757, 2499, 3595
BceAI ACGGC 3 cut(s) 352, 547, 3029
BcgI CGANNNNNNTGC 2 cut(s) 2833, 2867
BciT130I CCWGG 6 cut(s) 1701, 1886, 2302, 2956, 3147, 3194
BciVI GTATCC 1 cut(s) 3100
BclI TGATCA 3 cut(s) 1711, 2875, 3031
BcnI CCSGG 2 cut(s) 209, 215
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 9 cut(s) 918, 1551, 1818, 1907, 2235, 3158, 3255, 3267, 3560
BfmI CTRYAG 2 cut(s) 2447, 3551
BfoI RGCGCY 2 cut(s) 1907, 2691
BfuI GTATCC 1 cut(s) 3100
BglI GCCNNNNNGGC 1 cut(s) 2495
BglII AGATCT 1 cut(s) 3619
BlpI GCTNAGC 1 cut(s) 2078
Bme1390I CCNGG 8 cut(s) 209, 215, 1701, 1886, 2302, 2956, 3147, 3194
Bme18I GGWCC 5 cut(s) 87, 211, 427, 681, 1541
BmeT110I CYCGRG 3 cut(s) 79, 577, 842
BmgT120I GGNCC 9 cut(s) 87, 211, 427, 681, 1453, 1541, 3185, 3232, 3378
BmrFI CCNGG 8 cut(s) 209, 215, 1701, 1886, 2302, 2956, 3147, 3194
BmsI GCATC 5 cut(s) 357, 561, 2466, 2594, 2841
BmtI GCTAGC 1 cut(s) 1910
BpiI GAAGAC 1 cut(s) 2756
BpmI CTGGAG 1 cut(s) 1407
Bpu10I CCTNAGC 5 cut(s) 819, 837, 1338, 3429, 3519
Bpu1102I GCTNAGC 1 cut(s) 2078
BpuEI CTTGAG 8 cut(s) 965, 1661, 2142, 2507, 2620, 2820, 3122, 3563
BpuMI CCSGG 2 cut(s) 209, 215
BsaAI YACGTR 1 cut(s) 3404
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 3 cut(s) 618, 737, 1163
BsaJI CCNNGG 9 cut(s) 214, 620, 873, 1885, 2469, 2928, 2955, 3146, 3381
BsaWI WCCGGW 5 cut(s) 372, 429, 555, 961, 3070
BsaXI ACNNNNNCTCC 8 cut(s) 490, 493, 520, 523, 1265, 1295, 3296, 3326
Bse118I RCCGGY 4 cut(s) 242, 277, 372, 429
Bse1I ACTGG 6 cut(s) 1390, 1969, 2318, 2533, 2833, 3456
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 3 cut(s) 1975, 2295, 2789
BseAI TCCGGA 1 cut(s) 3070
BseBI CCWGG 6 cut(s) 1701, 1886, 2302, 2956, 3147, 3194
BseDI CCNNGG 9 cut(s) 214, 620, 873, 1885, 2469, 2928, 2955, 3146, 3381
BseMI GCAATG 3 cut(s) 1975, 2295, 2789
BseNI ACTGG 6 cut(s) 1390, 1969, 2318, 2533, 2833, 3456
BsePI GCGCGC 1 cut(s) 453
BseSI GKGCMC 2 cut(s) 2109, 2500
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 7 cut(s) 462, 603, 2086, 2250, 2378, 2697, 3295
BseYI CCCAGC 1 cut(s) 3182
BsgI GTGCAG 1 cut(s) 2578
Bsh1236I CGCG 3 cut(s) 231, 436, 455
Bsh1285I CGRYCG 8 cut(s) 208, 229, 243, 358, 377, 419, 434, 560
BshNI GGYRCC 4 cut(s) 997, 1691, 2106, 2772
BshTI ACCGGT 2 cut(s) 372, 429
BsiEI CGRYCG 8 cut(s) 208, 229, 243, 358, 377, 419, 434, 560
BsiHKAI GWGCWC 3 cut(s) 1550, 2711, 3571
BsiHKCI CYCGRG 3 cut(s) 79, 577, 842
BsiWI CGTACG 1 cut(s) 201
BslFI GGGAC 5 cut(s) 224, 268, 440, 1860, 2854
BsmBI CGTCTC 3 cut(s) 213, 327, 3004
BsmFI GGGAC 5 cut(s) 224, 268, 440, 1860, 2854
BsmI GAATGC 1 cut(s) 2385
Bso31I GGTCTC 3 cut(s) 618, 737, 1163
BsoBI CYCGRG 3 cut(s) 79, 577, 842
Bsp13I TCCGGA 1 cut(s) 3070
Bsp1720I GCTNAGC 1 cut(s) 2078
Bsp68I TCGCGA 1 cut(s) 231
BspEI TCCGGA 1 cut(s) 3070
BspFNI CGCG 3 cut(s) 231, 436, 455
BspHI TCATGA 1 cut(s) 2344
BspMAI CTGCAG 2 cut(s) 2451, 3555
BspOI GCTAGC 1 cut(s) 1910
BspQI GCTCTTC 1 cut(s) 978
BspT107I GGYRCC 4 cut(s) 997, 1691, 2106, 2772
BspTNI GGTCTC 3 cut(s) 618, 737, 1163
BsrDI GCAATG 3 cut(s) 1975, 2295, 2789
BsrFI RCCGGY 4 cut(s) 242, 277, 372, 429
BsrI ACTGG 6 cut(s) 1390, 1969, 2318, 2533, 2833, 3456
BssAI RCCGGY 4 cut(s) 242, 277, 372, 429
BssECI CCNNGG 9 cut(s) 214, 620, 873, 1885, 2469, 2928, 2955, 3146, 3381
BssHII GCGCGC 1 cut(s) 453
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 2469, 2928
Bst2UI CCWGG 6 cut(s) 1701, 1886, 2302, 2956, 3147, 3194
Bst4CI ACNGT 5 cut(s) 41, 1063, 1205, 1986, 3116
Bst6I CTCTTC 8 cut(s) 106, 163, 181, 266, 725, 978, 1092, 1125
BstACI GRCGYC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 3404
BstEII GGTNACC 1 cut(s) 2133
BstENI CCTNNNNNAGG 2 cut(s) 1883, 3071
BstFNI CGCG 3 cut(s) 231, 436, 455
BstH2I RGCGCY 2 cut(s) 1907, 2691
BstHHI GCGC 5 cut(s) 455, 457, 1906, 2418, 2690
BstMCI CGRYCG 8 cut(s) 208, 229, 243, 358, 377, 419, 434, 560
BstMWI GCNNNNNNNGC 7 cut(s) 191, 336, 463, 2113, 2495, 2786, 3413
BstNI CCWGG 6 cut(s) 1701, 1886, 2302, 2956, 3147, 3194
BstNSI RCATGY 4 cut(s) 2366, 2373, 2422, 2739
BstPI GGTNACC 1 cut(s) 2133
BstSCI CCNGG 8 cut(s) 207, 213, 1699, 1884, 2300, 2954, 3145, 3192
BstSFI CTRYAG 2 cut(s) 2447, 3551
BstSLI GKGCMC 2 cut(s) 2109, 2500
BstUI CGCG 3 cut(s) 231, 436, 455
BstV1I GCAGC 7 cut(s) 462, 603, 2086, 2250, 2378, 2697, 3295
BstV2I GAAGAC 1 cut(s) 2756
BstX2I RGATCY 7 cut(s) 14, 25, 46, 2153, 2831, 3154, 3619
BstYI RGATCY 7 cut(s) 14, 25, 46, 2153, 2831, 3154, 3619
BstZI CGGCCG 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 867
BsuI GTATCC 1 cut(s) 3100
BtgZI GCGATG 1 cut(s) 1733
BtsI GCAGTG 4 cut(s) 2444, 2566, 2827, 3178
BtsIMutI CAGTG 7 cut(s) 1383, 1397, 2444, 2566, 2827, 3178, 3449
BtuMI TCGCGA 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 866, 1361
CciI TCATGA 1 cut(s) 2344
CfoI GCGC 5 cut(s) 455, 457, 1906, 2418, 2690
Cfr10I RCCGGY 4 cut(s) 242, 277, 372, 429
Cfr13I GGNCC 9 cut(s) 87, 211, 427, 681, 1453, 1541, 3185, 3232, 3378
CseI GACGC 1 cut(s) 2826
Csp6I GTAC 7 cut(s) 202, 352, 1201, 1637, 1752, 1995, 2596
CspAI ACCGGT 2 cut(s) 372, 429
CviQI GTAC 7 cut(s) 202, 352, 1201, 1637, 1752, 1995, 2596
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 240, 2331
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 8 cut(s) 106, 163, 181, 266, 725, 978, 1092, 1125
EarI CTCTTC 8 cut(s) 106, 163, 181, 266, 725, 978, 1092, 1125
EciI GGCGGA 4 cut(s) 160, 264, 296, 606
Ecl136II GAGCTC 1 cut(s) 3569
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 2469, 2928
Eco24I GRGCYC 7 cut(s) 56, 771, 795, 813, 843, 951, 3571
Eco31I GGTCTC 3 cut(s) 618, 737, 1163
Eco47I GGWCC 5 cut(s) 87, 211, 427, 681, 1541
Eco47III AGCGCT 1 cut(s) 2689
Eco52I CGGCCG 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 3569
Eco57I CTGAAG 2 cut(s) 1023, 2531
Eco72I CACGTG 1 cut(s) 3404
Eco81I CCTNAGG 1 cut(s) 867
Eco88I CYCGRG 3 cut(s) 79, 577, 842
Eco91I GGTNACC 1 cut(s) 2133
EcoICRI GAGCTC 1 cut(s) 3569
EcoNI CCTNNNNNAGG 2 cut(s) 1883, 3071
EcoO109I RGGNCCY 1 cut(s) 3232
EcoO65I GGTNACC 1 cut(s) 2133
EcoRI GAATTC 1 cut(s) 1840
EcoRII CCWGG 6 cut(s) 1699, 1884, 2300, 2954, 3145, 3192
EcoT14I CCWWGG 2 cut(s) 2469, 2928
EcoT38I GRGCYC 7 cut(s) 56, 771, 795, 813, 843, 951, 3571
ErhI CCWWGG 2 cut(s) 2469, 2928
Esp3I CGTCTC 3 cut(s) 213, 327, 3004
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 5 cut(s) 224, 268, 440, 1860, 2854
FauI CCCGC 4 cut(s) 149, 432, 2787, 3369
FbaI TGATCA 3 cut(s) 1711, 2875, 3031
FblI GTMKAC 2 cut(s) 288, 2533
FriOI GRGCYC 7 cut(s) 56, 771, 795, 813, 843, 951, 3571
FspBI CTAG 9 cut(s) 918, 1551, 1818, 1907, 2235, 3158, 3255, 3267, 3560
GlaI GCGC 5 cut(s) 454, 456, 1905, 2417, 2689
GsaI CCCAGC 1 cut(s) 3186
GsuI CTGGAG 1 cut(s) 1407
HaeII RGCGCY 2 cut(s) 1907, 2691
HgaI GACGC 1 cut(s) 2826
HhaI GCGC 5 cut(s) 455, 457, 1906, 2418, 2690
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 5 cut(s) 453, 455, 1904, 2416, 2688
HinP1I GCGC 5 cut(s) 453, 455, 1904, 2416, 2688
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 3 cut(s) 112, 1663, 2080
HphI GGTGA 6 cut(s) 277, 736, 911, 992, 1114, 2127
Hpy166II GTNNAC 3 cut(s) 289, 1826, 2534
Hpy8I GTNNAC 3 cut(s) 289, 1826, 2534
Hpy99I CGWCG 5 cut(s) 227, 290, 293, 568, 649
HpyCH4III ACNGT 5 cut(s) 41, 1063, 1205, 1986, 3116
HpyCH4IV ACGT 2 cut(s) 285, 3403
HpyF10VI GCNNNNNNNGC 7 cut(s) 191, 336, 463, 2113, 2495, 2786, 3413
HpySE526I ACGT 2 cut(s) 285, 3403
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 5 cut(s) 453, 455, 1904, 2416, 2688
Kpn2I TCCGGA 1 cut(s) 3070
KroI GCCGGC 2 cut(s) 242, 277
KroNI GCCGGC 2 cut(s) 244, 279
Ksp22I TGATCA 3 cut(s) 1711, 2875, 3031
LguI GCTCTTC 1 cut(s) 978
Lsp1109I GCAGC 7 cut(s) 462, 603, 2086, 2250, 2378, 2697, 3295
LweI GCATC 5 cut(s) 357, 561, 2466, 2594, 2841
MaeI CTAG 9 cut(s) 918, 1551, 1818, 1907, 2235, 3158, 3255, 3267, 3560
MaeII ACGT 2 cut(s) 285, 3403
MaeIII GTNAC 4 cut(s) 1372, 1680, 2133, 3083
MfeI CAATTG 1 cut(s) 2501
MflI RGATCY 7 cut(s) 14, 25, 46, 2153, 2831, 3154, 3619
MlsI TGGCCA 1 cut(s) 2333
MluNI TGGCCA 1 cut(s) 2333
MlyI GAGTC 4 cut(s) 1367, 1414, 2635, 3314
MmeI TCCRAC 9 cut(s) 357, 375, 501, 1263, 2131, 2603, 2723, 3222, 3333
Mox20I TGGCCA 1 cut(s) 2333
MroI TCCGGA 1 cut(s) 3070
MroNI GCCGGC 2 cut(s) 242, 277
MroXI GAANNNNTTC 3 cut(s) 410, 2614, 3655
MscI TGGCCA 1 cut(s) 2333
MseI TTAA 9 cut(s) 630, 1614, 1736, 1866, 2028, 2402, 2973, 3615, 3629
MslI CAYNNNNRTG 1 cut(s) 2124
Msp20I TGGCCA 1 cut(s) 2333
MspR9I CCNGG 8 cut(s) 209, 215, 1701, 1886, 2302, 2956, 3147, 3194
MunI CAATTG 1 cut(s) 2501
Mva1269I GAATGC 1 cut(s) 2385
MvaI CCWGG 6 cut(s) 1701, 1886, 2302, 2956, 3147, 3194
MvnI CGCG 3 cut(s) 231, 436, 455
MwoI GCNNNNNNNGC 7 cut(s) 191, 336, 463, 2113, 2495, 2786, 3413
NaeI GCCGGC 2 cut(s) 244, 279
NciI CCSGG 2 cut(s) 209, 215
NgoMIV GCCGGC 2 cut(s) 242, 277
NheI GCTAGC 1 cut(s) 1906
NmeAIII GCCGAG 4 cut(s) 645, 898, 1055, 3406
NmuCI GTSAC 2 cut(s) 1372, 2133
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 4 cut(s) 2366, 2373, 2422, 2739
PaeI GCATGC 1 cut(s) 2422
PaeR7I CTCGAG 1 cut(s) 577
PagI TCATGA 1 cut(s) 2344
PauI GCGCGC 1 cut(s) 453
PciI ACATGT 1 cut(s) 2735
PciSI GCTCTTC 1 cut(s) 978
PcsI WCGNNNNNNNCGW 6 cut(s) 228, 342, 401, 650, 1277, 3571
PctI GAATGC 1 cut(s) 2385
PdiI GCCGGC 2 cut(s) 244, 279
PdmI GAANNNNTTC 3 cut(s) 410, 2614, 3655
PfeI GAWTC 9 cut(s) 32, 584, 689, 1402, 1466, 1499, 1604, 2798, 3245
Pfl23II CGTACG 1 cut(s) 201
PflFI GACNNNGTC 2 cut(s) 679, 1357
PflMI CCANNNNNTGG 2 cut(s) 2329, 2934
PinAI ACCGGT 2 cut(s) 372, 429
Ple19I CGATCG 3 cut(s) 229, 358, 419
PleI GAGTC 4 cut(s) 1366, 1414, 2634, 3313
PmaCI CACGTG 1 cut(s) 3404
PmlI CACGTG 1 cut(s) 3404
PpsI GAGTC 4 cut(s) 1366, 1414, 2634, 3313
Ppu21I YACGTR 1 cut(s) 3404
PscI ACATGT 1 cut(s) 2735
Psp124BI GAGCTC 1 cut(s) 3571
Psp6I CCWGG 6 cut(s) 1699, 1884, 2300, 2954, 3145, 3192
PspCI CACGTG 1 cut(s) 3404
PspEI GGTNACC 1 cut(s) 2133
PspFI CCCAGC 1 cut(s) 3182
PspGI CCWGG 6 cut(s) 1699, 1884, 2300, 2954, 3145, 3192
PspLI CGTACG 1 cut(s) 201
PspPI GGNCC 9 cut(s) 87, 211, 427, 681, 1453, 1541, 3185, 3232, 3378
PspXI VCTCGAGB 1 cut(s) 577
PstI CTGCAG 2 cut(s) 2451, 3555
PstNI CAGNNNCTG 2 cut(s) 866, 1361
PsuI RGATCY 7 cut(s) 14, 25, 46, 2153, 2831, 3154, 3619
PsyI GACNNNGTC 2 cut(s) 679, 1357
PteI GCGCGC 1 cut(s) 453
PvuI CGATCG 3 cut(s) 229, 358, 419
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 7 cut(s) 203, 353, 1202, 1638, 1753, 1996, 2597
RsaNI GTAC 7 cut(s) 202, 352, 1201, 1637, 1752, 1995, 2596
RseI CAYNNNNRTG 1 cut(s) 2124
SacI GAGCTC 1 cut(s) 3571
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 978
SaqAI TTAA 9 cut(s) 630, 1614, 1736, 1866, 2028, 2402, 2973, 3615, 3629
Sau96I GGNCC 9 cut(s) 87, 211, 427, 681, 1453, 1541, 3185, 3232, 3378
SchI GAGTC 4 cut(s) 1367, 1414, 2635, 3314
ScrFI CCNGG 8 cut(s) 209, 215, 1701, 1886, 2302, 2956, 3147, 3194
SfaNI GCATC 5 cut(s) 357, 561, 2466, 2594, 2841
SfcI CTRYAG 2 cut(s) 2447, 3551
Sfr274I CTCGAG 1 cut(s) 577
SgrDI CGTCGACG 1 cut(s) 287
SinI GGWCC 5 cut(s) 87, 211, 427, 681, 1541
SlaI CTCGAG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 2124
SmlI CTYRAG 9 cut(s) 577, 944, 1640, 2157, 2522, 2599, 2835, 3101, 3542
SmoI CTYRAG 9 cut(s) 577, 944, 1640, 2157, 2522, 2599, 2835, 3101, 3542
SpeI ACTAGT 1 cut(s) 917
SphI GCATGC 1 cut(s) 2422
SspI AATATT 2 cut(s) 2511, 3581
SspMI CTAG 9 cut(s) 918, 1551, 1818, 1907, 2235, 3158, 3255, 3267, 3560
SstI GAGCTC 1 cut(s) 3571
StyD4I CCNGG 8 cut(s) 207, 213, 1699, 1884, 2300, 2954, 3145, 3192
StyI CCWWGG 2 cut(s) 2469, 2928
TaaI ACNGT 5 cut(s) 41, 1063, 1205, 1986, 3116
TaiI ACGT 2 cut(s) 288, 3406
TaqII GACCGA 2 cut(s) 761, 1558
TatI WGTACW 1 cut(s) 2595
TfiI GAWTC 9 cut(s) 32, 584, 689, 1402, 1466, 1499, 1604, 2798, 3245
Tru1I TTAA 9 cut(s) 630, 1614, 1736, 1866, 2028, 2402, 2973, 3615, 3629
Tru9I TTAA 9 cut(s) 630, 1614, 1736, 1866, 2028, 2402, 2973, 3615, 3629
TscAI CASTG 7 cut(s) 1390, 1404, 2451, 2566, 2827, 3178, 3456
TseFI GTSAC 2 cut(s) 1372, 2133
TseI GCWGC 7 cut(s) 450, 591, 2074, 2238, 2366, 2685, 3283
Tsp45I GTSAC 2 cut(s) 1372, 2133
TspGWI ACGGA 2 cut(s) 2691, 3494
TspRI CASTG 7 cut(s) 1390, 1404, 2451, 2566, 2827, 3178, 3456
Tth111I GACNNNGTC 2 cut(s) 679, 1357
Van91I CCANNNNNTGG 2 cut(s) 2329, 2934
VpaK11BI GGWCC 5 cut(s) 87, 211, 427, 681, 1541
XagI CCTNNNNNAGG 2 cut(s) 1883, 3071
XapI RAATTY 4 cut(s) 1214, 1426, 1840, 2979
XbaI TCTAGA 1 cut(s) 3559
XceI RCATGY 4 cut(s) 2366, 2373, 2422, 2739
XhoI CTCGAG 1 cut(s) 577
XmiI GTMKAC 2 cut(s) 288, 2533
XmnI GAANNNNTTC 3 cut(s) 410, 2614, 3655
XspI CTAG 9 cut(s) 918, 1551, 1818, 1907, 2235, 3158, 3255, 3267, 3560
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.