MD07G1053200.v1.1

pectinesterase pectinesterase inhibitor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
4921766 .. 4926092
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1053200.v1.1.491

Sequence Viewer

Length: 1722 bp
ATGCCGAGGCTACCCTTCTCTCCTTTCTTCCTCCTTTCTTCTCTTCTCCTCTTTTCACTACTGTTGCTAACTGCTGCTGCTGCATCATCCCCCTCATCAGCCTCTTCAGCATGCAAGTCCACCCTCTACCCAAAGCTCTGCCGTTCCATCCTCTCTACCATCCGCTACTCACCCTCCGATCCCTACAACTACGGCAAGTTCTCCATCAAACAATGCCTGAAACAGGCACGCAAAACCTCCAAAATAATCAACCACTTCCTTGGCAAAACCAAGCACAAGTCCTTTTTCATAAACGACAGCGAGGTGAACGCCCTGGAGGACTGCCAGCAGTTCTCGGAGCTGAACGTGGAGTACTTGGAGGCGACCTCGACGGAGCTCAAGTCCGCCGAGTCGCTGAACGAGGAGCTGGTGAACAAGGTGCAGACGCTGCTGAGCGGCATTGTGACCAACCAGCAGACTTGTTACGATGGGCTTCTGGTGTCCAAGAGCACCGTTTTGGGAAACAATTCTGCTTTGGCCGTGGCTTTCTCTAATGTTACGCAGCTCTATAGTGTGTCGCTTGGGTTGGTCACGTATTCCTTGGCTCGTAATCTCAAAAAGCATAAGAAAGGCAGCAACGGCTCCGGCACCAAAAATGTGCTCAAATTCCATGAACCACTTGAAACTTTCATTAAGGCACTTCGGAAAAGTTCTGGAAAAAAATCGACGACTCCCGAAAGAGGTGAGAGGATTCTTGAAGAAATGGAGAGTAGTGGTATTCTGGTTAATAACACAGTGATTGTGAGTCCATATGGTACGGACAACTTCACATCGATTGGAGATGCCATTACTTCTGCTCCCAAGAACTTACAGGCTGAAGATGGCTACTTTGTGATCTATGTTAGAGGAGGATACTATCAAGAGTACATTGTCATCACCAAACGCAAGACTAACATAATGCTGCTCGGAGATGGTATTAATAACACTGTCATTACCGGAAACCATAGTTTCGTTGATGGTTGGACTACCTTCAACTCCTCAACCTTTGCTGTTTCTGCCGAGCGATTTGTAGCCATAGATATTACATTCAGGAACACTGCAGGTCCAGAAAAGCACCAAGCGGTAGCTGTAAGAAACAATGCTGACCTCTCCACATTTTACAGATGCAGTTTCGAAGGCTATCAGGACACACTATATGTACATTCCCTAAGGCAGTTCTACAAGGAATGTGACATATACGGAACTGTAGATTTTATTTTTGGAAATGCTGCAGCCGTCTTCCAGAGTTGCAACTTATACGCTCGAAAACCGATGCCTAACCAGAAGAACGCCTTCACAGCGCAGGGACGAACTGATCCAAATCAAAACACCGGAATCTCCATCCACAACTGCACAATTGAAGCTGCGCCGGACTTGGCAGCGGACCTCAACTCCACATTGAATTTTCTAGGAAGGCCTTGGAAGGTGTTCTCTAGGACTGTTATCATGCAGTCTTACATTGGCCCTCTGATCAGCTCAGTTGGATGGTTGGAATGGAATGGGACCGTTGGATTGGACACGCTGTTTTACGGTGAGTTTCAGAATCACGGGCCGGGGGCAAACACGACGGGGAGAGTACAATGGCCTGGTTACAGTCTGATGAATGTTACTCAAGCTGTGAATTTCACTGTCCTTAATTTCACTTTGGGTGATACTTGGTTGCCCGACACCGATATACCCTTCTATGGAGGATTGCTGAATTAG

Protein Analysis

574

Amino Acids

63.29

Weight (kDa)

8.53

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 34 - 188 1e-22 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 259 - 556 2.7e-134 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011631)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1070
AccB1I GGYRCC 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 435
AciI CCGC 5 cut(s) 163, 384, 435, 1100, 1400
AclWI GGATC 2 cut(s) 173, 1328
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 3 cut(s) 644, 1420, 1639
AcuI CTGAAG 2 cut(s) 90, 876
AfaI GTAC 5 cut(s) 353, 796, 905, 1179, 1596
AfiI CCNNNNNNNGG 3 cut(s) 223, 719, 1703
AgsI TTSAA 5 cut(s) 662, 737, 1012, 1379, 1420
AjnI CCWGG 2 cut(s) 312, 1603
AluBI AGCT 9 cut(s) 136, 340, 376, 406, 544, 1106, 1382, 1494, 1634
AluI AGCT 9 cut(s) 136, 340, 376, 406, 544, 1106, 1382, 1494, 1634
Alw21I GWGCWC 3 cut(s) 378, 491, 642
AlwI GGATC 2 cut(s) 173, 1328
AlwNI CAGNNNCTG 1 cut(s) 427
AoxI GGCC 5 cut(s) 516, 1433, 1480, 1568, 1601
ApoI RAATTY 3 cut(s) 644, 1420, 1639
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 3 cut(s) 505, 1310, 1445
AspLEI GCGC 2 cut(s) 1321, 1387
AspS9I GGNCC 5 cut(s) 1082, 1402, 1481, 1521, 1568
AsuC2I CCSGG 1 cut(s) 1572
AsuHPI GGTGA 7 cut(s) 162, 316, 421, 734, 907, 1562, 1679
AsuII TTCGAA 1 cut(s) 1152
AvaII GGWCC 3 cut(s) 1082, 1402, 1521
AxyI CCTNAGG 1 cut(s) 1187
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 1249
Bbv12I GWGCWC 3 cut(s) 378, 491, 642
BccI CCATC 9 cut(s) 155, 167, 212, 461, 854, 944, 989, 1367, 1497
BceAI ACGGC 5 cut(s) 126, 208, 503, 634, 1238
BciT130I CCWGG 2 cut(s) 314, 1605
BciVI GTATCC 1 cut(s) 884
BclI TGATCA 1 cut(s) 1488
BcnI CCSGG 1 cut(s) 1572
BfaI CTAG 2 cut(s) 1427, 1452
BfmI CTRYAG 4 cut(s) 547, 1077, 1224, 1248
BfuAI ACCTGC 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 884
BlpI GCTNAGC 1 cut(s) 431
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 314, 1572, 1605
Bme18I GGWCC 3 cut(s) 1082, 1402, 1521
BmgT120I GGNCC 5 cut(s) 1082, 1402, 1481, 1521, 1568
BmiI GGNNCC 3 cut(s) 622, 628, 1522
BmrFI CCNGG 3 cut(s) 314, 1572, 1605
BmsI GCATC 4 cut(s) 92, 811, 1133, 1281
BpiI GAAGAC 1 cut(s) 1249
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 1152
BpuEI CTTGAG 2 cut(s) 362, 1614
BpuMI CCSGG 1 cut(s) 1572
Bsa29I ATCGAT 1 cut(s) 812
BsaAI YACGTR 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 1338
BsaJI CCNNGG 7 cut(s) 5, 259, 312, 519, 579, 1436, 1571
BsaWI WCCGGW 2 cut(s) 974, 1349
BsaXI ACNNNNNCTCC 8 cut(s) 158, 188, 365, 395, 820, 850, 1394, 1424
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 719, 1703
Bse21I CCTNAGG 1 cut(s) 1187
Bse8I GATNNNNATC 1 cut(s) 1338
BseBI CCWGG 2 cut(s) 314, 1605
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 7 cut(s) 5, 259, 312, 519, 579, 1436, 1571
BseGI GGATG 5 cut(s) 86, 147, 159, 1359, 1508
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 3 cut(s) 223, 719, 1703
BseMII CTCAG 2 cut(s) 422, 1509
BseRI GAGGAG 4 cut(s) 38, 416, 900, 1006
BsgI GTGCAG 2 cut(s) 440, 1354
BshFI GGCC 5 cut(s) 518, 1435, 1482, 1570, 1603
BshNI GGYRCC 1 cut(s) 626
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 378, 491, 642
BsiSI CCGG 5 cut(s) 624, 975, 1350, 1388, 1571
BslFI GGGAC 2 cut(s) 1338, 1534
BslI CCNNNNNNNGG 3 cut(s) 223, 719, 1703
BsmFI GGGAC 2 cut(s) 1338, 1534
BsnI GGCC 5 cut(s) 518, 1435, 1482, 1570, 1603
Bsp119I TTCGAA 1 cut(s) 1152
Bsp1286I GDGCHC 3 cut(s) 378, 491, 642
Bsp1407I TGTACA 1 cut(s) 1177
Bsp143I GATC 4 cut(s) 178, 873, 1333, 1488
Bsp1720I GCTNAGC 1 cut(s) 431
BspACI CCGC 5 cut(s) 163, 384, 435, 1100, 1400
BspANI GGCC 5 cut(s) 518, 1435, 1482, 1570, 1603
BspCNI CTCAG 2 cut(s) 423, 1508
BspDI ATCGAT 1 cut(s) 812
BspLI GGNNCC 3 cut(s) 622, 628, 1522
BspMAI CTGCAG 2 cut(s) 1081, 1252
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 2 cut(s) 173, 1328
BspT104I TTCGAA 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 1177
BssECI CCNNGG 7 cut(s) 5, 259, 312, 519, 579, 1436, 1571
BssMI GATC 4 cut(s) 178, 873, 1333, 1488
BssT1I CCWWGG 3 cut(s) 259, 579, 1436
Bst2UI CCWGG 2 cut(s) 314, 1605
Bst6I CTCTTC 2 cut(s) 48, 109
BstAPI GCANNNNNTGC 1 cut(s) 427
BstAUI TGTACA 1 cut(s) 1177
BstBAI YACGTR 1 cut(s) 573
BstBI TTCGAA 1 cut(s) 1152
BstC8I GCNNGC 3 cut(s) 112, 229, 326
BstDEI CTNAG 3 cut(s) 431, 1187, 1495
BstDSI CCRYGG 1 cut(s) 519
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 5 cut(s) 86, 147, 159, 1359, 1508
BstHHI GCGC 2 cut(s) 1321, 1387
BstKTI GATC 4 cut(s) 181, 876, 1336, 1491
BstMBI GATC 4 cut(s) 178, 873, 1333, 1488
BstMWI GCNNNNNNNGC 6 cut(s) 80, 107, 427, 618, 1034, 1316
BstNI CCWGG 2 cut(s) 314, 1605
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 3 cut(s) 312, 1570, 1603
BstSFI CTRYAG 4 cut(s) 547, 1077, 1224, 1248
BstV2I GAAGAC 1 cut(s) 1249
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 812
Bsu36I CCTNAGG 1 cut(s) 1187
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 5 cut(s) 518, 1435, 1482, 1570, 1603
BsuTUI ATCGAT 1 cut(s) 812
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 5 cut(s) 86, 147, 159, 1359, 1508
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 4 cut(s) 780, 963, 1074, 1644
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 3 cut(s) 112, 229, 326
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 2 cut(s) 1321, 1387
Cfr13I GGNCC 5 cut(s) 1082, 1402, 1481, 1521, 1568
ClaI ATCGAT 1 cut(s) 812
CseI GACGC 1 cut(s) 433
Csp6I GTAC 5 cut(s) 352, 795, 904, 1178, 1595
CviAII CATG 3 cut(s) 111, 650, 1465
CviQI GTAC 5 cut(s) 352, 795, 904, 1178, 1595
DdeI CTNAG 3 cut(s) 431, 1187, 1495
DpnI GATC 4 cut(s) 180, 875, 1335, 1490
DpnII GATC 4 cut(s) 178, 873, 1333, 1488
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 48, 109
EarI CTCTTC 2 cut(s) 48, 109
EciI GGCGGA 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 3 cut(s) 259, 579, 1436
Eco147I AGGCCT 1 cut(s) 1435
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 3 cut(s) 1082, 1402, 1521
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 90, 876
Eco81I CCTNAGG 1 cut(s) 1187
EcoICRI GAGCTC 1 cut(s) 376
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 312, 1603
EcoT14I CCWWGG 3 cut(s) 259, 579, 1436
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 3 cut(s) 259, 579, 1436
FaeI CATG 3 cut(s) 114, 653, 1468
FalI AAGNNNNNCTT 2 cut(s) 1295, 1327
FaqI GGGAC 2 cut(s) 1338, 1534
FatI CATG 3 cut(s) 110, 649, 1464
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 1 cut(s) 1488
FokI GGATG 5 cut(s) 73, 134, 146, 1346, 1515
FriOI GRGCYC 1 cut(s) 378
FspBI CTAG 2 cut(s) 1427, 1452
GlaI GCGC 2 cut(s) 1320, 1386
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 5 cut(s) 518, 1435, 1482, 1570, 1603
HapII CCGG 5 cut(s) 624, 975, 1350, 1388, 1571
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 1321, 1387
Hin1II CATG 3 cut(s) 114, 653, 1468
Hin6I GCGC 2 cut(s) 1319, 1385
HinP1I GCGC 2 cut(s) 1319, 1385
HinfI GANTC 6 cut(s) 389, 709, 730, 784, 1353, 1561
HpaII CCGG 5 cut(s) 624, 975, 1350, 1388, 1571
HphI GGTGA 7 cut(s) 162, 316, 421, 734, 907, 1562, 1679
Hpy166II GTNNAC 3 cut(s) 120, 307, 412
Hpy188I TCNGA 7 cut(s) 178, 337, 684, 947, 1488, 1560, 1617
Hpy188III TCNNGA 8 cut(s) 693, 713, 734, 899, 1069, 1085, 1163, 1261
Hpy8I GTNNAC 3 cut(s) 120, 307, 412
Hpy99I CGWCG 3 cut(s) 373, 709, 1588
HpyAV CCTTC 7 cut(s) 25, 1018, 1148, 1321, 1425, 1435, 1708
HpyCH4IV ACGT 2 cut(s) 345, 572
HpyCH4V TGCA 9 cut(s) 83, 114, 421, 1079, 1146, 1250, 1269, 1371, 1468
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 107, 427, 618, 1034, 1316
HpyF3I CTNAG 3 cut(s) 431, 1187, 1495
HpySE526I ACGT 2 cut(s) 345, 572
Hsp92II CATG 3 cut(s) 114, 653, 1468
HspAI GCGC 2 cut(s) 1319, 1385
Ksp22I TGATCA 1 cut(s) 1488
Kzo9I GATC 4 cut(s) 178, 873, 1333, 1488
LmnI GCTCC 5 cut(s) 337, 373, 403, 626, 841
LweI GCATC 4 cut(s) 92, 811, 1133, 1281
MaeI CTAG 2 cut(s) 1427, 1452
MaeII ACGT 2 cut(s) 345, 572
MaeIII GTNAC 7 cut(s) 442, 461, 535, 568, 1208, 1607, 1624
MalI GATC 4 cut(s) 180, 875, 1335, 1490
MbiI CCGCTC 1 cut(s) 435
MboI GATC 4 cut(s) 178, 873, 1333, 1488
MboII GAAGA 8 cut(s) 19, 30, 35, 96, 749, 869, 1249, 1315
MfeI CAATTG 1 cut(s) 1374
MhlI GDGCHC 3 cut(s) 378, 491, 642
MluCI AATT 7 cut(s) 505, 644, 1374, 1420, 1639, 1654, 1717
MlyI GAGTC 3 cut(s) 398, 703, 793
MmeI TCCRAC 4 cut(s) 980, 1480, 1488, 1507
MroXI GAANNNNTTC 3 cut(s) 505, 1310, 1445
MseI TTAA 4 cut(s) 672, 765, 957, 1653
MspA1I CMGCKG 1 cut(s) 1400
MspI CCGG 5 cut(s) 624, 975, 1350, 1388, 1571
MspR9I CCNGG 3 cut(s) 314, 1572, 1605
MunI CAATTG 1 cut(s) 1374
MvaI CCWGG 2 cut(s) 314, 1605
MwoI GCNNNNNNNGC 6 cut(s) 80, 107, 427, 618, 1034, 1316
NciI CCSGG 1 cut(s) 1572
NdeI CATATG 1 cut(s) 790
NdeII GATC 4 cut(s) 178, 873, 1333, 1488
NlaIII CATG 3 cut(s) 114, 653, 1468
NlaIV GGNNCC 3 cut(s) 622, 628, 1522
NmeAIII GCCGAG 3 cut(s) 30, 412, 1063
NmuCI GTSAC 3 cut(s) 442, 568, 1208
NspI RCATGY 1 cut(s) 114
NspV TTCGAA 1 cut(s) 1152
PaeI GCATGC 1 cut(s) 114
PceI AGGCCT 1 cut(s) 1435
PdmI GAANNNNTTC 3 cut(s) 505, 1310, 1445
PfeI GAWTC 3 cut(s) 730, 1353, 1561
PleI GAGTC 3 cut(s) 397, 703, 792
PpsI GAGTC 3 cut(s) 397, 703, 792
Ppu21I YACGTR 1 cut(s) 573
PshBI ATTAAT 1 cut(s) 957
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 312, 1603
PspGI CCWGG 2 cut(s) 312, 1603
PspN4I GGNNCC 3 cut(s) 622, 628, 1522
PspPI GGNCC 5 cut(s) 1082, 1402, 1481, 1521, 1568
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
PstI CTGCAG 2 cut(s) 1081, 1252
PstNI CAGNNNCTG 1 cut(s) 427
RsaI GTAC 5 cut(s) 353, 796, 905, 1179, 1596
RsaNI GTAC 5 cut(s) 352, 795, 904, 1178, 1595
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 4 cut(s) 672, 765, 957, 1653
Sau3AI GATC 4 cut(s) 178, 873, 1333, 1488
Sau96I GGNCC 5 cut(s) 1082, 1402, 1481, 1521, 1568
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 3 cut(s) 398, 703, 793
ScrFI CCNGG 3 cut(s) 314, 1572, 1605
SduI GDGCHC 3 cut(s) 378, 491, 642
SfaNI GCATC 4 cut(s) 92, 811, 1133, 1281
SfcI CTRYAG 4 cut(s) 547, 1077, 1224, 1248
SfuI TTCGAA 1 cut(s) 1152
SinI GGWCC 3 cut(s) 1082, 1402, 1521
SmlI CTYRAG 2 cut(s) 377, 1629
SmoI CTYRAG 2 cut(s) 377, 1629
SphI GCATGC 1 cut(s) 114
Sse9I AATT 7 cut(s) 505, 644, 1374, 1420, 1639, 1654, 1717
SseBI AGGCCT 1 cut(s) 1435
SsiI CCGC 5 cut(s) 163, 384, 435, 1100, 1400
SspMI CTAG 2 cut(s) 1427, 1452
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 1435
StyD4I CCNGG 3 cut(s) 312, 1570, 1603
StyI CCWWGG 3 cut(s) 259, 579, 1436
TaiI ACGT 2 cut(s) 348, 575
TaqI TCGA 5 cut(s) 368, 704, 812, 1152, 1282
TasI AATT 7 cut(s) 505, 644, 1374, 1420, 1639, 1654, 1717
TatI WGTACW 4 cut(s) 351, 903, 1177, 1594
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 3 cut(s) 730, 1353, 1561
Tru1I TTAA 4 cut(s) 672, 765, 957, 1653
Tru9I TTAA 4 cut(s) 672, 765, 957, 1653
TscAI CASTG 4 cut(s) 780, 970, 1081, 1651
TseFI GTSAC 3 cut(s) 442, 568, 1208
Tsp45I GTSAC 3 cut(s) 442, 568, 1208
TspDTI ATGAA 4 cut(s) 277, 658, 666, 1634
TspGWI ACGGA 3 cut(s) 386, 812, 1233
TspRI CASTG 4 cut(s) 780, 970, 1081, 1651
VpaK11BI GGWCC 3 cut(s) 1082, 1402, 1521
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 3 cut(s) 644, 1420, 1639
XceI RCATGY 1 cut(s) 114
XmnI GAANNNNTTC 3 cut(s) 505, 1310, 1445
XspI CTAG 2 cut(s) 1427, 1452
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.