Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0018483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9009955 .. 9012741

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1086500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCGTGTTTTTTTTTTTAAACAAACAATATTATCTACATTAAATGGAGGGAGTGGGCTTAGGGCTGGTTTGCACATAGTATATTCCTTGCTCTTCTCAATACCAATGCTGGCAACTGTCTTCATGGGAACAGTTTCTGTCATATCCTTTGCTGGCTATATTACTTATATTGACTTCATGAATAACATGGGACATTGCAATTTTGAGCTCATCCCAAATTGCCTCTTCTCGCTCTTTCCTCCTCTCAAGTATCTTATGTATACCCCTTCAGAGGTGGAATCGCCAGATGTCCTTCATCTAACCCATCTAACAACACCCGAGTCCATCTATCATCTACCGCTAGGATTTGCTTCCTTGTCCTCTATGCCAGACACATCAAAATGGTACCTGTGGTTGATGTGGCCTGTGACATTTCTGGTACATGGTGTTAATTCGGATCTGTGGTCGTATACATTTGTGATTGAGAGGCAGCGCTTTAACAAGCTCAGATTACAAACTTGGGTTATACCCATATACACTTTGCAAAAAGGAGCTATCAATAGCTTGATTGAGGAAGCCATTGTTCAAGCTGAGAGAAAGGGTGTCAAATTTATAAGTCTCGGCCTCTTGAATCAGGCCAGTTTCTACCTACCAATATCTGAGGGAGTGATCCTTAAATGTATATTCTCATCCCTACCTAGCACGAGGCCTTTTGGGAGCTTACTGGCTTCAGGTTCCGTAGGAACTCCGAAGTTAAGTGAGAAGAAGGCCAGAGCACTCCCAAGATGGGTGACCACTGGGAAGTTGCTCGTGAGTTCCCAAAAACAAAATCGTGAGGGAATGGTAAGCCCAAAGCGGATAATATCGTGCTATGGTGATAGAGAGAGCCCGGGATGTGGTGGACCCTGGCCAGGATGGCCAGAATGGTATCAGAGTCAATCCCTGGCCGGAAGTGTGTCGATGAGGACGTCGGGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

9.33

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018483)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227000.v1.1 MD07G1086500.v1.1 MD13G1075300.v1.1
prunus_persica	Prupe.2G112900_v2.0.a1 Prupe.2G112900_v2.0.a1 Prupe.3G128800_v2.0.a1
rosa_multiflora	Rmu_sc0000335.1_g000025 Rmu_sc0006326.1_g000029
rosa_rugosa	Rorug01G0166900
rosa_samantha	Rh1AG182600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AatII	GACGTC	1 cut(s)	950
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	2 cut(s)	260, 449
AciI	CCGC	2 cut(s)	338, 835
AclWI	GGATC	2 cut(s)	444, 643
AcoI	YGGCCR	3 cut(s)	887, 896, 924
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	2 cut(s)	252, 693
AcyI	GRCGYC	1 cut(s)	947
AfaI	GTAC	2 cut(s)	386, 420
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	4 cut(s)	271, 766, 875, 890
AgsI	TTSAA	2 cut(s)	566, 610
AjnI	CCWGG	3 cut(s)	884, 889, 921
AluBI	AGCT	6 cut(s)	208, 484, 533, 543, 569, 699
AluI	AGCT	6 cut(s)	208, 484, 533, 543, 569, 699
Alw21I	GWGCWC	2 cut(s)	210, 757
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	444, 643
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	2 cut(s)	317, 868
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	9 cut(s)	401, 601, 615, 686, 747, 887, 896, 924, 952
ApaI	GGGCCC	1 cut(s)	956
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	3 cut(s)	881, 952, 953
AsuC2I	CCSGG	2 cut(s)	869, 870
AsuHPI	GGTGA	2 cut(s)	781, 866
AvaI	CYCGRG	2 cut(s)	317, 868
AvaII	GGWCC	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	956
BalI	TGGCCA	2 cut(s)	889, 898
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	3 cut(s)	210, 869, 956
BauI	CACGAG	2 cut(s)	682, 788
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	210, 757
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	4 cut(s)	312, 332, 759, 888
BciT130I	CCWGG	3 cut(s)	886, 891, 923
BcnI	CCSGG	2 cut(s)	869, 870
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	2 cut(s)	341, 678
BfoI	RGCGCY	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	895
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
Bme1390I	CCNGG	5 cut(s)	869, 870, 886, 891, 923
Bme18I	GGWCC	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	317, 868
BmgT120I	GGNCC	3 cut(s)	881, 952, 953
BmiI	GGNNCC	4 cut(s)	386, 715, 883, 954
BmrFI	CCNGG	5 cut(s)	869, 870, 886, 891, 923
BmrI	ACTGGG	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	869, 870
BsaHI	GRCGYC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	868, 884, 921
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 766, 875, 890
Bse1I	ACTGG	3 cut(s)	618, 708, 781
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	886, 891, 923
BseDI	CCNNGG	3 cut(s)	868, 884, 921
BseGI	GGATG	4 cut(s)	210, 668, 878, 899
BseLI	CCNNNNNNNGG	4 cut(s)	271, 766, 875, 890
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	499, 561, 630
BseNI	ACTGG	3 cut(s)	618, 708, 781
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	956
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	9 cut(s)	403, 603, 617, 688, 749, 889, 898, 926, 954
BshNI	GGYRCC	1 cut(s)	384
BsiHKAI	GWGCWC	2 cut(s)	210, 757
BsiHKCI	CYCGRG	2 cut(s)	317, 868
BsiSI	CCGG	2 cut(s)	869, 927
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	4 cut(s)	271, 766, 875, 890
BsmAI	GTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	9 cut(s)	403, 603, 617, 688, 749, 889, 898, 926, 954
BsoBI	CYCGRG	2 cut(s)	317, 868
Bsp120I	GGGCCC	1 cut(s)	952
Bsp1286I	GDGCHC	4 cut(s)	210, 757, 869, 956
Bsp143I	GATC	2 cut(s)	436, 648
BspACI	CCGC	2 cut(s)	338, 835
BspANI	GGCC	9 cut(s)	403, 603, 617, 688, 749, 889, 898, 926, 954
BspCNI	CTCAG	3 cut(s)	498, 562, 631
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	386, 715, 883, 954
BspPI	GGATC	2 cut(s)	444, 643
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	618, 708, 781
BssECI	CCNNGG	3 cut(s)	868, 884, 921
BssMI	GATC	2 cut(s)	436, 648
BssNAI	GTATAC	2 cut(s)	261, 450
BssNI	GRCGYC	1 cut(s)	947
BssSI	CACGAG	2 cut(s)	682, 788
Bst1107I	GTATAC	2 cut(s)	261, 450
Bst2BI	CACGAG	2 cut(s)	682, 788
Bst2UI	CCWGG	3 cut(s)	886, 891, 923
Bst4CI	ACNGT	2 cut(s)	118, 133
Bst6I	CTCTTC	2 cut(s)	98, 230
BstACI	GRCGYC	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	111, 154
BstDEI	CTNAG	4 cut(s)	59, 485, 570, 639
BstEII	GGTNACC	1 cut(s)	769
BstF5I	GGATG	4 cut(s)	210, 668, 878, 899
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	439, 651
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	2 cut(s)	436, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	895
BstNI	CCWGG	3 cut(s)	886, 891, 923
BstPI	GGTNACC	1 cut(s)	769
BstSCI	CCNGG	5 cut(s)	867, 868, 884, 889, 921
BstSLI	GKGCMC	1 cut(s)	956
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZ17I	GTATAC	2 cut(s)	261, 450
BsuRI	GGCC	9 cut(s)	403, 603, 617, 688, 749, 889, 898, 926, 954
BtsCI	GGATG	4 cut(s)	210, 668, 878, 899
BtsIMutI	CAGTG	1 cut(s)	774
Cac8I	GCNNGC	2 cut(s)	111, 154
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	3 cut(s)	881, 952, 953
Cfr9I	CCCGGG	1 cut(s)	868
Csp6I	GTAC	2 cut(s)	385, 419
CviAII	CATG	4 cut(s)	124, 178, 187, 422
CviQI	GTAC	2 cut(s)	385, 419
DdeI	CTNAG	4 cut(s)	59, 485, 570, 639
DpnI	GATC	2 cut(s)	438, 650
DpnII	GATC	2 cut(s)	436, 648
DraI	TTTAAA	1 cut(s)	19
EaeI	YGGCCR	3 cut(s)	887, 896, 924
Eam1104I	CTCTTC	2 cut(s)	98, 230
EarI	CTCTTC	2 cut(s)	98, 230
Ecl136II	GAGCTC	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	688
Eco24I	GRGCYC	3 cut(s)	210, 869, 956
Eco47I	GGWCC	1 cut(s)	881
Eco47III	AGCGCT	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	252, 693
Eco88I	CYCGRG	2 cut(s)	317, 868
Eco91I	GGTNACC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	953
EcoO65I	GGTNACC	1 cut(s)	769
EcoRII	CCWGG	3 cut(s)	884, 889, 921
EcoT38I	GRGCYC	3 cut(s)	210, 869, 956
FaeI	CATG	4 cut(s)	127, 181, 190, 425
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	4 cut(s)	123, 177, 186, 421
FblI	GTMKAC	2 cut(s)	260, 449
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	4 cut(s)	197, 655, 885, 906
FriOI	GRGCYC	3 cut(s)	210, 869, 956
Fsp4HI	GCNGC	1 cut(s)	470
FspBI	CTAG	2 cut(s)	341, 678
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	9 cut(s)	403, 603, 617, 688, 749, 889, 898, 926, 954
HapII	CCGG	2 cut(s)	869, 927
HhaI	GCGC	1 cut(s)	474
Hin1I	GRCGYC	1 cut(s)	947
Hin1II	CATG	4 cut(s)	127, 181, 190, 425
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	278, 320, 610, 913
HpaII	CCGG	2 cut(s)	869, 927
HphI	GGTGA	2 cut(s)	781, 866
Hpy166II	GTNNAC	3 cut(s)	261, 450, 881
Hpy188I	TCNGA	6 cut(s)	271, 436, 488, 640, 729, 912
Hpy188III	TCNNGA	4 cut(s)	178, 607, 790, 812
Hpy8I	GTNNAC	3 cut(s)	261, 450, 881
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	3 cut(s)	276, 302, 739
HpyCH4III	ACNGT	2 cut(s)	118, 133
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	3 cut(s)	73, 198, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	895
HpyF3I	CTNAG	4 cut(s)	59, 485, 570, 639
HpySE526I	ACGT	1 cut(s)	947
Hsp92I	GRCGYC	1 cut(s)	947
Hsp92II	CATG	4 cut(s)	127, 181, 190, 425
HspAI	GCGC	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	436, 648
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	530, 696
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	341, 678
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	406, 769
MalI	GATC	2 cut(s)	438, 650
MboI	GATC	2 cut(s)	436, 648
MboII	GAAGA	4 cut(s)	85, 112, 217, 754
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	4 cut(s)	210, 757, 869, 956
MlsI	TGGCCA	2 cut(s)	889, 898
MluCI	AATT	4 cut(s)	199, 217, 430, 587
MluNI	TGGCCA	2 cut(s)	889, 898
MlyI	GAGTC	2 cut(s)	329, 922
Mox20I	TGGCCA	2 cut(s)	889, 898
MroXI	GAANNNNTTC	1 cut(s)	133
MscI	TGGCCA	2 cut(s)	889, 898
MseI	TTAA	7 cut(s)	18, 41, 429, 477, 654, 734, 958
MslI	CAYNNNNRTG	1 cut(s)	379
Msp20I	TGGCCA	2 cut(s)	889, 898
MspI	CCGG	2 cut(s)	869, 927
MspR9I	CCNGG	5 cut(s)	869, 870, 886, 891, 923
MvaI	CCWGG	3 cut(s)	886, 891, 923
MwoI	GCNNNNNNNGC	1 cut(s)	895
NciI	CCSGG	2 cut(s)	869, 870
NdeII	GATC	2 cut(s)	436, 648
NlaIII	CATG	4 cut(s)	127, 181, 190, 425
NlaIV	GGNNCC	4 cut(s)	386, 715, 883, 954
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	2 cut(s)	406, 769
PagI	TCATGA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	278, 610
PkrI	GCNGC	1 cut(s)	471
PleI	GAGTC	2 cut(s)	328, 921
PpsI	GAGTC	2 cut(s)	328, 921
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	884, 889, 921
PspEI	GGTNACC	1 cut(s)	769
PspGI	CCWGG	3 cut(s)	884, 889, 921
PspN4I	GGNNCC	4 cut(s)	386, 715, 883, 954
PspOMI	GGGCCC	1 cut(s)	952
PspPI	GGNCC	3 cut(s)	881, 952, 953
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	386, 420
RsaNI	GTAC	2 cut(s)	385, 419
RseI	CAYNNNNRTG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	7 cut(s)	18, 41, 429, 477, 654, 734, 958
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	2 cut(s)	436, 648
Sau96I	GGNCC	3 cut(s)	881, 952, 953
SchI	GAGTC	2 cut(s)	329, 922
ScrFI	CCNGG	5 cut(s)	869, 870, 886, 891, 923
SduI	GDGCHC	4 cut(s)	210, 757, 869, 956
SfiI	GGCCNNNNNGGCC	1 cut(s)	895
SinI	GGWCC	1 cut(s)	881
SmaI	CCCGGG	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	199, 217, 430, 587
SseBI	AGGCCT	1 cut(s)	688
SsiI	CCGC	2 cut(s)	338, 835
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	341, 678
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	688
StyD4I	CCNGG	5 cut(s)	867, 868, 884, 889, 921
TaaI	ACNGT	2 cut(s)	118, 133
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	1 cut(s)	938
TasI	AATT	4 cut(s)	199, 217, 430, 587
TfiI	GAWTC	2 cut(s)	278, 610
Tru1I	TTAA	7 cut(s)	18, 41, 429, 477, 654, 734, 958
Tru9I	TTAA	7 cut(s)	18, 41, 429, 477, 654, 734, 958
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	2 cut(s)	406, 769
TseI	GCWGC	1 cut(s)	469
Tsp45I	GTSAC	2 cut(s)	406, 769
TspDTI	ATGAA	4 cut(s)	112, 166, 194, 284
TspGWI	ACGGA	1 cut(s)	706
TspMI	CCCGGG	1 cut(s)	868
TspRI	CASTG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	881
XapI	RAATTY	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	868
XmiI	GTMKAC	2 cut(s)	260, 449
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	341, 678
ZraI	GACGTC	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.