Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018483

Physical Location & Seq

Genomic Coordinates Forward (+)

17113525 .. 17117895

Gene Structure 4371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCGAATCGTTGTACAAACCTCTTGAGTTTGAGCAAGTCGACCGAGAAAGAAATTGGGATGATCAAATAGTGTTCAATGGGATTTTGTTCTGCCTAGGCAGCAGGCATATGCCTGGGGCTCAAAATCTGCCACTTTGGAGGACAGATGGGGTTCTCTTGACGATTTTGCTGCATGCTGGCCCAGTGGAGTACCTCTACTATTGGCTCCACAGAGCACTTCACCATCATTTCCTCTACTCTCGCTACCATTCTCATCACCATTCCTCTATTGTCACTGAGCCAATCACTTCTGTGATTCATCCATTTGCGGAGCACATAGCATATTTCGTACTCTTTGCTATACCTATGTTGACGACTACACTCACGGGGACAGCTTCAATCATATCCTTTGCTGGCTATGTTACTTATATTGACTTCATGAACAACATGGGACACTGCAATTTTGAGCTCATTCCAAACTGGCTCTTCTCCATTTTCCCTCCTCTTAAGTATCTCATGTACACCCCATCGTTCCACTCTTTGCATCACACGCAATTCAGGACCAATTACTCACTCTTCATGCCAATCTACGACTACATCTATGGAACCATGGACAAATCTTCAGATTCTCTCTACGAAACTTCACTCAAGAGAAAGGAAGAAACACCAGATGTCCTTCATCTAACTCATCTAACAACACCTGAGTCCATCTATCATCTACCGCTAGGATTTGCTTCCTTGTCCTCTAAGCCCCACACATCACACTGGTACCTATGGTTGATGTGGCCTGTGACACTGTGGTCCGCGATGCTTACTTGGATCTATGGCCGTACATTTGTGGTTGAGCGGCAGCGTTTTGACAAGCTAAGATTACAAACTTGGGTCATACCCAAATACAGCTTGCAATACTTCTTGCAATGGCAAAATGAAGCTATCAATGGTTTGATTGAGGAAGCCATACTGGAAGCAGAGGAAAAGGGCACTACTACAAAAAAGCAAAAAGACGACGGTAAATCACCGTCGTGTATTTGGTTTTTCAATGGTCGTGGAATCCACCGTCATCTTTTCCCTCATAAACCACGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

357

Amino Acids

42.08

Weight (kDa)

7.12

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018483)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227000.v1.1 MD07G1086500.v1.1 MD13G1075300.v1.1
prunus_persica	Prupe.2G112900_v2.0.a1 Prupe.2G112900_v2.0.a1 Prupe.3G128800_v2.0.a1
rosa_multiflora	Rmu_sc0000335.1_g000025 Rmu_sc0006326.1_g000029
rosa_rugosa	Rorug01G0166900
rosa_samantha	Rh1AG182600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	781
Acc65I	GGTACC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	750
AccBSI	CCGCTC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	788
AciI	CCGC	4 cut(s)	311, 704, 786, 829
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	2 cut(s)	3, 808
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	6 cut(s)	17, 194, 333, 503, 752, 814
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	3 cut(s)	79, 381, 1021
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	2 cut(s)	293, 1003
AluBI	AGCT	5 cut(s)	377, 451, 847, 882, 914
AluI	AGCT	5 cut(s)	377, 451, 847, 882, 914
Alw21I	GWGCWC	3 cut(s)	220, 318, 453
AlwI	GGATC	1 cut(s)	809
AoxI	GGCC	4 cut(s)	3, 181, 767, 808
ApeKI	GCWGC	3 cut(s)	102, 172, 832
Asp718I	GGTACC	1 cut(s)	750
AspA2I	CCTAGG	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	182, 543, 783
AsuHPI	GGTGA	3 cut(s)	215, 251, 990
AvaII	GGWCC	2 cut(s)	543, 783
AvrII	CCTAGG	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	965
BaeI	ACNNNNGTAYC	2 cut(s)	734, 767
BanI	GGYRCC	1 cut(s)	750
BanII	GRGCYC	2 cut(s)	124, 453
Bbv12I	GWGCWC	3 cut(s)	220, 318, 453
BbvI	GCAGC	3 cut(s)	114, 159, 844
BccI	CCATC	4 cut(s)	143, 234, 517, 698
BceAI	ACGGC	1 cut(s)	795
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	64
BfaI	CTAG	2 cut(s)	98, 707
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	4 cut(s)	103, 173, 830, 833
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	4 cut(s)	104, 174, 831, 834
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	543, 783
BmgT120I	GGNCC	3 cut(s)	182, 543, 783
BmiI	GGNNCC	3 cut(s)	209, 589, 752
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	535, 780
BmuI	ACTGGG	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	47, 614
BsaJI	CCNNGG	3 cut(s)	97, 116, 591
Bse1I	ACTGG	4 cut(s)	185, 467, 752, 948
Bse3DI	GCAATG	1 cut(s)	905
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	97, 116, 591
BseGI	GGATG	2 cut(s)	67, 301
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	2 cut(s)	270, 675
BseNI	ACTGG	4 cut(s)	185, 467, 752, 948
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	965
BseXI	GCAGC	3 cut(s)	114, 159, 844
Bsh1236I	CGCG	1 cut(s)	788
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	4 cut(s)	5, 183, 769, 810
BshNI	GGYRCC	1 cut(s)	750
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	3 cut(s)	220, 318, 453
BslFI	GGGAC	2 cut(s)	385, 447
BsmFI	GGGAC	2 cut(s)	385, 447
BsnI	GGCC	4 cut(s)	5, 183, 769, 810
Bsp1286I	GDGCHC	5 cut(s)	124, 220, 318, 453, 965
Bsp1407I	TGTACA	2 cut(s)	15, 501
Bsp143I	GATC	2 cut(s)	64, 801
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	311, 704, 786, 829
BspANI	GGCC	4 cut(s)	5, 183, 769, 810
BspCNI	CTCAG	2 cut(s)	271, 676
BspFNI	CGCG	1 cut(s)	788
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	209, 589, 752
BspPI	GGATC	1 cut(s)	809
BspQI	GCTCTTC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	750
BspTI	CTTAAG	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	905
BsrGI	TGTACA	2 cut(s)	15, 501
BsrI	ACTGG	4 cut(s)	185, 467, 752, 948
BssECI	CCNNGG	3 cut(s)	97, 116, 591
BssMI	GATC	2 cut(s)	64, 801
BssT1I	CCWWGG	2 cut(s)	97, 591
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	4 cut(s)	780, 992, 1002, 1040
Bst6I	CTCTTC	2 cut(s)	473, 563
BstAFI	CTTAAG	1 cut(s)	488
BstAUI	TGTACA	2 cut(s)	15, 501
BstC8I	GCNNGC	5 cut(s)	107, 177, 181, 397, 884
BstDEI	CTNAG	4 cut(s)	279, 684, 729, 848
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	67, 301
BstFNI	CGCG	1 cut(s)	788
BstKTI	GATC	2 cut(s)	67, 804
BstMBI	GATC	2 cut(s)	64, 801
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 532
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	965
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	3 cut(s)	114, 159, 844
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BsuRI	GGCC	4 cut(s)	5, 183, 769, 810
BtgI	CCRYGG	1 cut(s)	591
BtgZI	GCGATG	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	67, 301
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	5 cut(s)	192, 276, 436, 745, 776
Cac8I	GCNNGC	5 cut(s)	107, 177, 181, 397, 884
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	182, 543, 783
Csp6I	GTAC	6 cut(s)	16, 193, 332, 502, 751, 813
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	6 cut(s)	176, 421, 430, 499, 562, 592
CviQI	GTAC	6 cut(s)	16, 193, 332, 502, 751, 813
DdeI	CTNAG	4 cut(s)	279, 684, 729, 848
DpnI	GATC	2 cut(s)	66, 803
DpnII	GATC	2 cut(s)	64, 801
DrdI	GACNNNNNNGTC	1 cut(s)	781
DseDI	GACNNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	3, 808
Eam1104I	CTCTTC	2 cut(s)	473, 563
EarI	CTCTTC	2 cut(s)	473, 563
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	97, 591
Eco24I	GRGCYC	2 cut(s)	124, 453
Eco47I	GGWCC	2 cut(s)	543, 783
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	97, 591
EcoT38I	GRGCYC	2 cut(s)	124, 453
ErhI	CCWWGG	2 cut(s)	97, 591
FaeI	CATG	6 cut(s)	179, 424, 433, 502, 565, 595
FaqI	GGGAC	2 cut(s)	385, 447
FatI	CATG	6 cut(s)	175, 420, 429, 498, 561, 591
FauNDI	CATATG	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	103, 173, 830, 833
FokI	GGATG	2 cut(s)	74, 288
FriOI	GRGCYC	2 cut(s)	124, 453
Fsp4HI	GCNGC	4 cut(s)	103, 173, 830, 833
FspBI	CTAG	2 cut(s)	98, 707
GluI	GCNGC	4 cut(s)	103, 173, 830, 833
HaeIII	GGCC	4 cut(s)	5, 183, 769, 810
Hin1II	CATG	6 cut(s)	179, 424, 433, 502, 565, 595
HincII	GTYRAC	2 cut(s)	43, 354
HindII	GTYRAC	2 cut(s)	43, 354
HinfI	GANTC	5 cut(s)	8, 298, 608, 686, 1032
HphI	GGTGA	3 cut(s)	215, 251, 990
Hpy166II	GTNNAC	3 cut(s)	43, 354, 504
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	5 cut(s)	26, 160, 421, 541, 631
Hpy8I	GTNNAC	3 cut(s)	43, 354, 504
Hpy99I	CGWCG	3 cut(s)	992, 1006, 1068
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	4 cut(s)	780, 992, 1002, 1040
HpyCH4V	TGCA	5 cut(s)	175, 441, 526, 886, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 532
HpyF3I	CTNAG	4 cut(s)	279, 684, 729, 848
Hsp92II	CATG	6 cut(s)	179, 424, 433, 502, 565, 595
KpnI	GGTACC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	64, 801
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	2 cut(s)	213, 313
Lsp1109I	GCAGC	3 cut(s)	114, 159, 844
LweI	GCATC	2 cut(s)	535, 780
MaeI	CTAG	2 cut(s)	98, 707
MaeIII	GTNAC	3 cut(s)	274, 403, 772
MalI	GATC	2 cut(s)	66, 803
MbiI	CCGCTC	1 cut(s)	829
MboI	GATC	2 cut(s)	64, 801
MboII	GAAGA	4 cut(s)	460, 550, 594, 653
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	5 cut(s)	124, 220, 318, 453, 965
MluCI	AATT	4 cut(s)	55, 442, 536, 547
MlyI	GAGTC	1 cut(s)	695
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	2 cut(s)	293, 1003
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	2 cut(s)	102, 532
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	2 cut(s)	64, 801
NlaIII	CATG	6 cut(s)	179, 424, 433, 502, 565, 595
NlaIV	GGNNCC	3 cut(s)	209, 589, 752
NmuCI	GTSAC	2 cut(s)	274, 772
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	2 cut(s)	293, 1003
PaeI	GCATGC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	8, 298, 608, 1032
PkrI	GCNGC	4 cut(s)	104, 174, 831, 834
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	209, 589, 752
PspPI	GGNCC	3 cut(s)	182, 543, 783
PsuI	RGATCY	1 cut(s)	801
RsaI	GTAC	6 cut(s)	17, 194, 333, 503, 752, 814
RsaNI	GTAC	6 cut(s)	16, 193, 332, 502, 751, 813
RseI	CAYNNNNRTG	2 cut(s)	293, 1003
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	4 cut(s)	103, 173, 830, 833
Sau3AI	GATC	2 cut(s)	64, 801
Sau96I	GGNCC	3 cut(s)	182, 543, 783
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	5 cut(s)	124, 220, 318, 453, 965
SfaNI	GCATC	2 cut(s)	535, 780
SinI	GGWCC	2 cut(s)	543, 783
SmiMI	CAYNNNNRTG	2 cut(s)	293, 1003
SmlI	CTYRAG	3 cut(s)	26, 488, 629
SmoI	CTYRAG	3 cut(s)	26, 488, 629
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	4 cut(s)	55, 442, 536, 547
SsiI	CCGC	4 cut(s)	311, 704, 786, 829
SspMI	CTAG	2 cut(s)	98, 707
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	97, 591
TaaI	ACNGT	4 cut(s)	780, 992, 1002, 1040
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	55, 442, 536, 547
TatI	WGTACW	2 cut(s)	15, 501
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	4 cut(s)	8, 298, 608, 1032
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	5 cut(s)	192, 283, 443, 752, 783
TseFI	GTSAC	2 cut(s)	274, 772
TseI	GCWGC	3 cut(s)	102, 172, 832
Tsp45I	GTSAC	2 cut(s)	274, 772
TspDTI	ATGAA	6 cut(s)	290, 409, 437, 550, 650, 924
TspRI	CASTG	5 cut(s)	192, 283, 443, 752, 783
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	543, 783
XceI	RCATGY	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	98, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.